Wall clock time and date at job start Mon Mar 30 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 110.27666 * 2 1 4 4 H 1.08004 * 119.99856 * 119.36343 * 3 2 1 5 5 C 1.37875 * 120.00361 * 299.37026 * 3 2 1 6 6 N 1.31515 * 119.99678 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00222 * 179.97438 * 5 3 2 8 8 H 1.48492 * 109.47341 * 89.99725 * 7 5 3 9 9 H 1.48509 * 109.46988 * 209.99551 * 7 5 3 10 10 H 1.48498 * 109.47178 * 329.99352 * 7 5 3 11 11 C 1.54944 * 110.39640 * 122.15162 * 2 1 3 12 12 C 1.55309 * 100.94264 * 82.51353 * 11 2 1 13 13 C 1.54378 * 102.25014 * 34.13276 * 12 11 2 14 14 C 1.52998 * 109.82935 * 98.16093 * 13 12 11 15 15 C 1.53005 * 109.82837 * 219.13100 * 13 12 11 16 16 C 1.50702 * 109.47243 * 184.59007 * 15 13 12 17 17 C 1.33386 * 125.20203 * 89.99663 * 16 15 13 18 18 C 1.38429 * 114.92192 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91758 * 0.02562 * 18 17 16 20 20 S 1.75878 * 125.20240 * 269.69581 * 16 15 13 21 21 O 1.43236 * 107.59193 * 338.64269 * 13 12 11 22 22 H 1.08999 * 109.47558 * 180.63685 * 1 2 3 23 23 H 1.09004 * 109.47120 * 300.63083 * 1 2 3 24 24 H 1.08999 * 109.47454 * 60.63070 * 1 2 3 25 25 H 0.97002 * 119.99908 * 180.02562 * 6 5 3 26 26 H 1.09000 * 111.12659 * 200.43121 * 11 2 1 27 27 H 1.08999 * 111.12551 * 324.54895 * 11 2 1 28 28 H 1.08997 * 110.85030 * 152.32660 * 12 11 2 29 29 H 1.09005 * 110.84112 * 275.74386 * 12 11 2 30 30 H 1.08996 * 109.47301 * 300.41033 * 14 13 12 31 31 H 1.09006 * 109.47359 * 60.41114 * 14 13 12 32 32 H 1.09003 * 109.46893 * 180.40865 * 14 13 12 33 33 H 1.09000 * 109.47203 * 304.59204 * 15 13 12 34 34 H 1.09005 * 109.47080 * 64.59168 * 15 13 12 35 35 H 1.07998 * 122.54360 * 0.02562 * 17 16 15 36 36 H 1.07996 * 122.54179 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.19859 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 1 2.6696 1.7612 0.8152 5 6 1.7418 2.2633 -1.0405 6 7 0.9904 1.8399 -2.0333 7 14 2.3886 4.0157 -1.0401 8 1 3.7048 4.0577 -1.7263 9 1 1.4300 4.8973 -1.7538 10 1 2.5450 4.4853 0.3599 11 6 2.0699 -0.7729 1.2296 12 6 1.9865 -2.2368 0.7176 13 6 2.2993 -2.0764 -0.7856 14 6 3.7722 -2.3978 -1.0464 15 6 1.4090 -3.0138 -1.6039 16 6 1.7977 -2.9339 -3.0577 17 6 2.7122 -3.7015 -3.6525 18 6 2.9008 -3.4465 -4.9999 19 6 2.1399 -2.4713 -5.4992 20 16 1.1097 -1.8193 -4.2314 21 8 2.0285 -0.7156 -1.1414 22 1 -0.3634 -1.0276 0.0114 23 1 -0.3633 0.5236 0.8843 24 1 -0.3634 0.5040 -0.8956 25 1 0.7723 2.4375 -2.7656 26 1 3.0999 -0.4916 1.4491 27 1 1.4305 -0.6231 2.0995 28 1 2.7348 -2.8615 1.2051 29 1 0.9864 -2.6437 0.8677 30 1 4.4000 -1.7204 -0.4675 31 1 3.9778 -3.4264 -0.7497 32 1 3.9883 -2.2758 -2.1078 33 1 1.5359 -4.0368 -1.2495 34 1 0.3665 -2.7165 -1.4897 35 1 3.2631 -4.4648 -3.1231 36 1 3.6103 -3.9954 -5.6013 37 1 2.1515 -2.1364 -6.5259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690002013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:54 Heat of formation + Delta-G solvation = -19.199330 kcal Electronic energy + Delta-G solvation = -19101.311912 eV Core-core repulsion = 16356.121374 eV Total energy + Delta-G solvation = -2745.190538 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.06515 -37.21867 -33.79526 -31.88142 -31.01418 -29.53053 -27.08444 -26.43006 -25.20138 -23.31034 -22.05155 -19.67300 -18.99938 -18.58245 -16.51744 -16.31115 -15.03517 -14.82900 -14.74669 -14.25526 -13.43456 -13.03592 -12.86847 -12.41179 -12.20774 -12.09477 -11.97910 -11.66927 -11.58898 -11.37286 -11.08321 -10.89161 -10.81290 -10.58700 -10.47979 -10.26579 -10.05514 -10.00316 -9.81588 -9.40527 -8.90655 -8.45536 -8.17501 -7.80415 -7.75387 -5.90524 -4.05071 1.57253 2.28260 2.68291 3.22455 3.33681 3.40576 3.42721 4.46626 4.88918 5.31569 5.46132 5.48755 5.49591 5.56907 5.74078 5.77914 5.97150 6.00692 6.06099 6.16493 6.20885 6.36946 6.44778 6.58338 6.61996 6.67933 6.75016 6.78542 6.82846 6.91841 6.97011 7.07919 7.16591 7.37972 7.82927 8.14123 8.41813 8.71979 9.12539 9.64683 11.11894 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.008284 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.356103 B = 3379.009068 C = 4207.242101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.232 3.768 3 C -0.525 4.525 4 H 0.059 0.941 5 C 0.083 3.917 6 N -0.853 5.853 7 Si 0.884 3.116 8 H -0.281 1.281 9 H -0.287 1.287 10 H -0.275 1.275 11 C -0.141 4.141 12 C -0.146 4.146 13 C 0.103 3.897 14 C -0.147 4.147 15 C -0.054 4.054 16 C -0.142 4.142 17 C -0.167 4.167 18 C -0.138 4.138 19 C -0.251 4.251 20 S 0.167 5.833 21 O -0.331 6.331 22 H 0.009 0.991 23 H 0.033 0.967 24 H 0.087 0.913 25 H 0.258 0.742 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 -10.296 -1.700 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.195 3.805 3 C -0.563 4.563 4 H 0.077 0.923 5 C -0.122 4.122 6 N -0.489 5.489 7 Si 0.712 3.288 8 H -0.207 1.207 9 H -0.213 1.213 10 H -0.200 1.200 11 C -0.179 4.179 12 C -0.183 4.183 13 C 0.061 3.939 14 C -0.204 4.204 15 C -0.093 4.093 16 C -0.260 4.260 17 C -0.197 4.197 18 C -0.170 4.170 19 C -0.387 4.387 20 S 0.433 5.567 21 O -0.250 6.250 22 H 0.028 0.972 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.337 -9.003 -2.047 9.239 hybrid contribution 1.544 -0.231 0.024 1.562 sum 1.207 -9.234 -2.023 9.530 Atomic orbital electron populations 1.22103 0.98372 0.97221 1.02588 1.19853 0.90188 0.90478 0.79970 1.20950 1.33751 0.94214 1.07376 0.92299 1.24964 0.94191 0.97823 0.95255 1.69964 1.34944 1.35004 1.08952 0.86742 0.78901 0.85102 0.78048 1.20679 1.21255 1.20004 1.23294 1.01117 0.93419 1.00100 1.23125 1.00775 0.98585 0.95861 1.21789 0.93065 0.87321 0.91705 1.22065 0.96311 0.99480 1.02543 1.20636 1.00531 0.99664 0.88493 1.24404 1.02125 0.99771 0.99710 1.19914 1.01664 1.03539 0.94587 1.19953 1.01995 0.99681 0.95325 1.25679 1.05829 1.03733 1.03429 1.84888 1.38376 1.35667 0.97763 1.88900 1.84331 1.15827 1.35928 0.97185 0.94761 0.89452 0.93165 0.91874 0.92206 0.91964 0.91799 0.92602 0.93510 0.92013 0.90729 0.90750 0.85364 0.85579 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.64 37.15 0.32 -3.12 16 2 C 0.23 5.66 0.72 -90.75 -0.07 5.60 16 3 C -0.53 -14.31 8.28 -34.44 -0.29 -14.59 16 4 H 0.06 1.59 7.77 -52.48 -0.41 1.19 16 5 C 0.08 2.29 5.28 -17.82 -0.09 2.19 16 6 N -0.85 -23.86 11.07 55.43 0.61 -23.25 16 7 Si 0.88 21.22 29.54 -169.99 -5.02 16.19 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 C -0.14 -2.91 6.01 -24.48 -0.15 -3.06 16 12 C -0.15 -2.57 5.69 -24.78 -0.14 -2.71 16 13 C 0.10 1.99 0.93 -89.90 -0.08 1.90 16 14 C -0.15 -2.62 8.14 37.16 0.30 -2.32 16 15 C -0.05 -0.93 4.90 -27.88 -0.14 -1.07 16 16 C -0.14 -2.50 4.78 -36.00 -0.17 -2.68 16 17 C -0.17 -2.64 8.46 -41.21 -0.35 -2.99 16 18 C -0.14 -2.08 10.18 -41.21 -0.42 -2.50 16 19 C -0.25 -3.96 11.23 29.04 0.33 -3.63 16 20 S 0.17 3.10 23.33 -107.50 -2.51 0.59 16 21 O -0.33 -8.03 9.36 -35.23 -0.33 -8.36 16 22 H 0.01 0.20 7.37 -51.93 -0.38 -0.18 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 2.30 6.21 -51.93 -0.32 1.98 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.06 1.31 8.05 -51.93 -0.42 0.90 16 27 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 28 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 29 H 0.06 1.06 7.50 -51.93 -0.39 0.67 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.17 6.21 -51.93 -0.32 0.84 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.35 8.05 -51.93 -0.42 0.94 16 35 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 309.92 15.07 4.67 4.67 Total: -1.00 -28.71 309.92 -9.10 -37.81 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.58 Total: 1.32 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -0.94 Total: -28.98 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.61 Total: -23.25 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.33 Total: -8.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -2.51 Total: 0.59 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.71 -9.10 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.607 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds