Wall clock time and date at job start Mon Mar 30 2020 06:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 110.27666 * 2 1 4 4 H 1.08004 * 119.99856 * 119.36343 * 3 2 1 5 5 C 1.37875 * 120.00361 * 299.37026 * 3 2 1 6 6 N 1.31515 * 119.99678 * 359.97438 * 5 3 2 7 7 Si 1.86797 * 120.00222 * 179.97438 * 5 3 2 8 8 H 1.48492 * 109.47341 * 89.99725 * 7 5 3 9 9 H 1.48509 * 109.46988 * 209.99551 * 7 5 3 10 10 H 1.48498 * 109.47178 * 329.99352 * 7 5 3 11 11 C 1.54944 * 110.39640 * 122.15162 * 2 1 3 12 12 C 1.55309 * 100.94264 * 82.51353 * 11 2 1 13 13 C 1.54378 * 102.25014 * 34.13276 * 12 11 2 14 14 C 1.52998 * 109.82935 * 98.16093 * 13 12 11 15 15 C 1.53005 * 109.82837 * 219.13100 * 13 12 11 16 16 C 1.50702 * 109.47243 * 184.59007 * 15 13 12 17 17 C 1.33386 * 125.20203 * 89.99663 * 16 15 13 18 18 C 1.38429 * 114.92192 * 179.97438 * 17 16 15 19 19 C 1.33390 * 114.91758 * 0.02562 * 18 17 16 20 20 S 1.75878 * 125.20240 * 269.69581 * 16 15 13 21 21 O 1.43236 * 107.59193 * 338.64269 * 13 12 11 22 22 H 1.08999 * 109.47558 * 180.63685 * 1 2 3 23 23 H 1.09004 * 109.47120 * 300.63083 * 1 2 3 24 24 H 1.08999 * 109.47454 * 60.63070 * 1 2 3 25 25 H 0.97002 * 119.99908 * 180.02562 * 6 5 3 26 26 H 1.09000 * 111.12659 * 200.43121 * 11 2 1 27 27 H 1.08999 * 111.12551 * 324.54895 * 11 2 1 28 28 H 1.08997 * 110.85030 * 152.32660 * 12 11 2 29 29 H 1.09005 * 110.84112 * 275.74386 * 12 11 2 30 30 H 1.08996 * 109.47301 * 300.41033 * 14 13 12 31 31 H 1.09006 * 109.47359 * 60.41114 * 14 13 12 32 32 H 1.09003 * 109.46893 * 180.40865 * 14 13 12 33 33 H 1.09000 * 109.47203 * 304.59204 * 15 13 12 34 34 H 1.09005 * 109.47080 * 64.59168 * 15 13 12 35 35 H 1.07998 * 122.54360 * 0.02562 * 17 16 15 36 36 H 1.07996 * 122.54179 * 180.02562 * 18 17 16 37 37 H 1.08000 * 125.19859 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 1 2.6696 1.7612 0.8152 5 6 1.7418 2.2633 -1.0405 6 7 0.9904 1.8399 -2.0333 7 14 2.3886 4.0157 -1.0401 8 1 3.7048 4.0577 -1.7263 9 1 1.4300 4.8973 -1.7538 10 1 2.5450 4.4853 0.3599 11 6 2.0699 -0.7729 1.2296 12 6 1.9865 -2.2368 0.7176 13 6 2.2993 -2.0764 -0.7856 14 6 3.7722 -2.3978 -1.0464 15 6 1.4090 -3.0138 -1.6039 16 6 1.7977 -2.9339 -3.0577 17 6 2.7122 -3.7015 -3.6525 18 6 2.9008 -3.4465 -4.9999 19 6 2.1399 -2.4713 -5.4992 20 16 1.1097 -1.8193 -4.2314 21 8 2.0285 -0.7156 -1.1414 22 1 -0.3634 -1.0276 0.0114 23 1 -0.3633 0.5236 0.8843 24 1 -0.3634 0.5040 -0.8956 25 1 0.7723 2.4375 -2.7656 26 1 3.0999 -0.4916 1.4491 27 1 1.4305 -0.6231 2.0995 28 1 2.7348 -2.8615 1.2051 29 1 0.9864 -2.6437 0.8677 30 1 4.4000 -1.7204 -0.4675 31 1 3.9778 -3.4264 -0.7497 32 1 3.9883 -2.2758 -2.1078 33 1 1.5359 -4.0368 -1.2495 34 1 0.3665 -2.7165 -1.4897 35 1 3.2631 -4.4648 -3.1231 36 1 3.6103 -3.9954 -5.6013 37 1 2.1515 -2.1364 -6.5259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690002013.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:54 Heat of formation + Delta-G solvation = -33.994665 kcal Electronic energy + Delta-G solvation = -19101.953486 eV Core-core repulsion = 16356.121374 eV Total energy + Delta-G solvation = -2745.832112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.63376 -38.51769 -35.51156 -33.65803 -32.67655 -31.04773 -28.68447 -27.82870 -27.12569 -24.78646 -23.45916 -21.37219 -20.52323 -19.85529 -18.37441 -17.73782 -16.70604 -16.42135 -16.21989 -15.87160 -15.16420 -14.57043 -14.23793 -13.99166 -13.79673 -13.51174 -13.39687 -13.10642 -13.04010 -12.97378 -12.80563 -12.69579 -12.41083 -12.25820 -12.17190 -11.91861 -11.89914 -11.42792 -11.23437 -11.03336 -10.74475 -10.49227 -9.76309 -9.21942 -9.18244 -7.95971 -6.16696 0.30820 0.98291 1.40495 1.41690 1.42717 1.50595 2.01912 2.46357 3.15803 3.60466 3.96788 4.07672 4.20083 4.30135 4.34925 4.39500 4.57776 4.73112 4.77744 4.83011 4.86868 4.90937 4.98428 5.03259 5.04026 5.14112 5.19951 5.32359 5.37116 5.40006 5.53366 5.55894 5.61851 5.75799 5.83161 6.19846 6.43831 6.75667 7.31248 7.57280 9.03939 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018974 B = 0.008284 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.356103 B = 3379.009068 C = 4207.242101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.220 3.780 3 C -0.547 4.547 4 H 0.050 0.950 5 C 0.039 3.961 6 N -0.873 5.873 7 Si 0.938 3.062 8 H -0.284 1.284 9 H -0.284 1.284 10 H -0.269 1.269 11 C -0.139 4.139 12 C -0.134 4.134 13 C 0.089 3.911 14 C -0.140 4.140 15 C -0.048 4.048 16 C -0.154 4.154 17 C -0.156 4.156 18 C -0.137 4.137 19 C -0.243 4.243 20 S 0.075 5.925 21 O -0.361 6.361 22 H 0.028 0.972 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.255 0.745 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -12.477 -1.320 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.182 3.818 3 C -0.584 4.584 4 H 0.068 0.932 5 C -0.164 4.164 6 N -0.510 5.510 7 Si 0.765 3.235 8 H -0.210 1.210 9 H -0.209 1.209 10 H -0.193 1.193 11 C -0.177 4.177 12 C -0.171 4.171 13 C 0.048 3.952 14 C -0.197 4.197 15 C -0.087 4.087 16 C -0.272 4.272 17 C -0.186 4.186 18 C -0.168 4.168 19 C -0.379 4.379 20 S 0.340 5.660 21 O -0.281 6.281 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.075 0.925 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.988 -11.191 -1.656 11.356 hybrid contribution 1.185 0.379 -0.127 1.251 sum 2.174 -10.812 -1.783 11.172 Atomic orbital electron populations 1.21944 0.98567 0.97855 1.00867 1.19860 0.90129 0.89939 0.81864 1.21329 1.33563 0.96454 1.07096 0.93153 1.25606 0.94610 1.01024 0.95187 1.70110 1.35861 1.35767 1.09244 0.85890 0.78047 0.81441 0.78131 1.20982 1.20930 1.19332 1.23188 1.00512 0.95091 0.98922 1.23099 1.02596 0.96932 0.94491 1.22122 0.94361 0.85494 0.93180 1.22013 0.94958 1.01362 1.01362 1.20594 0.99018 1.00887 0.88242 1.24463 1.03240 0.99907 0.99602 1.20295 1.00379 1.03005 0.94970 1.20380 1.01807 0.99122 0.95451 1.25900 1.04931 1.03597 1.03462 1.85211 1.41246 1.38480 1.01112 1.88828 1.84543 1.18572 1.36176 0.95307 0.94745 0.92698 0.93600 0.92691 0.91205 0.88866 0.90494 0.94155 0.89672 0.93493 0.87169 0.92492 0.82524 0.82136 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.64 71.98 0.62 -5.85 16 2 C 0.22 10.77 0.72 -10.88 -0.01 10.76 16 3 C -0.55 -30.34 8.28 25.60 0.21 -30.13 16 4 H 0.05 2.78 7.77 -2.91 -0.02 2.76 16 5 C 0.04 2.19 5.28 84.65 0.45 2.64 16 6 N -0.87 -50.54 11.07 21.45 0.24 -50.30 16 7 Si 0.94 44.44 29.54 68.60 2.03 46.47 16 8 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 C -0.14 -5.56 6.01 32.05 0.19 -5.36 16 12 C -0.13 -4.32 5.69 31.86 0.18 -4.13 16 13 C 0.09 3.28 0.93 -10.32 -0.01 3.27 16 14 C -0.14 -4.63 8.14 71.98 0.59 -4.05 16 15 C -0.05 -1.58 4.90 29.85 0.15 -1.43 16 16 C -0.15 -5.24 4.78 24.59 0.12 -5.12 16 17 C -0.16 -4.46 8.46 21.22 0.18 -4.28 16 18 C -0.14 -3.70 10.18 21.22 0.22 -3.49 16 19 C -0.24 -7.36 11.23 66.72 0.75 -6.62 16 20 S 0.07 2.83 23.33 -56.49 -1.32 1.51 16 21 O -0.36 -17.66 9.36 -148.98 -1.39 -19.05 16 22 H 0.03 1.22 7.37 -2.39 -0.02 1.20 16 23 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.05 2.99 6.21 -2.39 -0.01 2.98 16 25 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 26 H 0.05 2.24 8.05 -2.39 -0.02 2.22 16 27 H 0.07 2.59 8.04 -2.39 -0.02 2.57 16 28 H 0.09 2.44 7.82 -2.39 -0.02 2.42 16 29 H 0.08 2.28 7.50 -2.38 -0.02 2.27 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.05 1.68 6.21 -2.39 -0.01 1.66 16 33 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.06 2.04 8.05 -2.38 -0.02 2.02 16 35 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.17 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -63.72 309.92 4.22 -59.50 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 1.04 Total: 15.65 kcal Atomic # 6 Polarization: -57.41 SS G_CDS: 3.63 Total: -53.78 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.24 Total: -50.30 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.39 Total: -19.05 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.32 Total: 1.51 kcal Total: -63.72 4.22 -59.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002013.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.505 kcal (2) G-P(sol) polarization free energy of solvation -63.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds