Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.48075 * 2 1 4 4 C 1.50694 * 109.46797 * 59.97588 * 3 2 1 5 5 C 1.33394 * 125.20046 * 89.72142 * 4 3 2 6 6 C 1.38423 * 114.91684 * 179.85776 * 5 4 3 7 7 C 1.33388 * 114.92381 * 0.42771 * 6 5 4 8 8 S 1.75881 * 109.59375 * 359.77197 * 7 6 5 9 9 C 1.53100 * 109.48223 * 239.97968 * 2 1 3 10 10 C 1.53181 * 109.15732 * 297.62692 * 9 2 1 11 11 C 1.53173 * 109.03676 * 303.01504 * 10 9 2 12 12 C 1.53096 * 109.16177 * 56.98730 * 11 10 9 13 13 H 1.08993 * 109.48033 * 62.37417 * 12 11 10 14 14 C 1.50702 * 109.47878 * 182.41096 * 12 11 10 15 15 H 1.08001 * 120.00314 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99588 * 180.02562 * 14 12 11 17 17 N 1.31511 * 120.00270 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99670 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46901 * 60.00020 * 18 16 14 20 20 H 1.48506 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47149 * 299.99761 * 18 16 14 22 22 O 1.42899 * 109.48295 * 120.03461 * 2 1 3 23 23 H 1.08994 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47047 * 300.02346 * 1 2 3 25 25 H 1.09004 * 109.47332 * 60.02184 * 1 2 3 26 26 H 1.08995 * 109.46719 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46950 * 299.97866 * 3 2 1 28 28 H 1.07998 * 122.54068 * 0.02562 * 5 4 3 29 29 H 1.07998 * 122.53901 * 180.20277 * 6 5 4 30 30 H 1.07998 * 125.20224 * 179.79560 * 7 6 5 31 31 H 1.08988 * 109.52177 * 177.72151 * 9 2 1 32 32 H 1.08996 * 109.57409 * 57.56015 * 9 2 1 33 33 H 1.08999 * 109.53619 * 183.15506 * 10 9 2 34 34 H 1.08997 * 109.61723 * 62.93401 * 10 9 2 35 35 H 1.08998 * 109.52657 * 297.07777 * 11 10 9 36 36 H 1.09003 * 109.57546 * 176.91826 * 11 10 9 37 37 H 0.97003 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 1.5375 2.1530 1.2301 5 6 2.1682 2.1965 2.4048 6 6 1.5142 2.9136 3.3917 7 6 0.3482 3.4451 3.0212 8 16 0.0259 3.0457 1.3390 9 6 2.0406 -0.7221 -1.2497 10 6 1.5757 -2.1812 -1.2124 11 6 2.0764 -2.8322 0.0805 12 6 1.5645 -2.0286 1.2788 13 1 0.4750 -2.0552 1.2955 14 6 2.1017 -2.6284 2.5526 15 1 2.7437 -3.4960 2.5123 16 6 1.7729 -2.0701 3.7697 17 7 0.9909 -1.0139 3.8189 18 14 2.4383 -2.8140 5.3488 19 1 3.9227 -2.7769 5.3263 20 1 1.9416 -2.0342 6.5109 21 1 1.9800 -4.2218 5.4643 22 8 2.0066 -0.6743 1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 3.1302 1.4422 0.0005 27 1 1.6773 1.9562 -0.8902 28 1 3.1184 1.7113 2.5722 29 1 1.9157 3.0308 4.3874 30 1 -0.2988 4.0313 3.6569 31 1 3.1297 -0.6873 -1.2710 32 1 1.6430 -0.2358 -2.1405 33 1 1.9826 -2.7155 -2.0710 34 1 0.4868 -2.2192 -1.2419 35 1 3.1664 -2.8400 0.0860 36 1 1.7045 -3.8550 0.1422 37 1 0.7592 -0.6214 4.6752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690002027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -24.645212 kcal Electronic energy + Delta-G solvation = -19230.554449 eV Core-core repulsion = 16485.127760 eV Total energy + Delta-G solvation = -2745.426689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.94372 -36.99023 -33.64961 -32.53861 -31.80750 -29.42532 -27.47812 -26.03543 -24.97926 -22.83155 -21.84869 -20.61270 -18.53237 -18.00662 -16.52860 -16.48945 -14.91974 -14.85913 -14.79031 -14.26678 -14.04887 -13.28963 -12.77529 -12.67975 -12.47882 -12.02049 -11.96727 -11.68557 -11.44520 -11.36466 -11.03505 -10.94094 -10.85847 -10.76180 -10.38137 -10.33539 -10.14323 -10.09599 -9.69022 -9.54464 -8.73956 -8.39336 -7.85967 -7.73205 -7.71880 -5.91156 -4.03406 1.69920 2.29263 2.62326 3.34892 3.39482 3.42323 3.54857 4.47130 4.96332 5.28432 5.45926 5.52511 5.60229 5.66058 5.69969 5.91381 5.98130 6.04178 6.13798 6.23141 6.28626 6.32023 6.34151 6.40334 6.56473 6.62370 6.73133 6.86636 6.90399 6.97456 7.01491 7.08165 7.15732 7.25007 7.62399 7.97248 8.38297 8.86699 9.23719 9.65297 11.14110 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.010210 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.554121 B = 2741.616955 C = 4174.869589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 C -0.032 4.032 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.114 4.114 7 C -0.228 4.228 8 S 0.054 5.946 9 C -0.138 4.138 10 C -0.120 4.120 11 C -0.145 4.145 12 C 0.221 3.779 13 H 0.017 0.983 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.083 3.917 17 N -0.844 5.844 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 O -0.338 6.338 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.152 0.848 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.532 7.022 -6.660 9.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.073 3.927 3 C -0.072 4.072 4 C -0.256 4.256 5 C -0.134 4.134 6 C -0.145 4.145 7 C -0.363 4.363 8 S 0.316 5.684 9 C -0.176 4.176 10 C -0.157 4.157 11 C -0.183 4.183 12 C 0.165 3.835 13 H 0.035 0.965 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.124 4.124 17 N -0.479 5.479 18 Si 0.711 3.289 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 O -0.257 6.257 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.059 0.941 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.169 0.831 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.688 7.581 -7.381 10.714 hybrid contribution 1.219 -0.949 1.830 2.395 sum -0.469 6.632 -5.551 8.661 Atomic orbital electron populations 1.22460 0.96992 1.02270 1.01383 1.21094 0.92684 0.90734 0.88224 1.20156 1.00784 0.93465 0.92756 1.24032 0.97028 1.04332 1.00204 1.19911 1.02400 0.99582 0.91479 1.20074 0.95312 0.98955 1.00205 1.25275 1.02028 1.10177 0.98783 1.83803 1.23623 1.51461 1.09511 1.22141 1.00906 0.96497 0.98026 1.21630 1.00361 0.95447 0.98309 1.22276 1.00661 0.99546 0.95817 1.19655 0.94274 0.78426 0.91122 0.96545 1.20906 1.33091 1.13015 0.89799 0.92292 1.24996 0.94334 0.94405 0.98651 1.70036 1.33156 1.19774 1.24982 0.86830 0.79531 0.79223 0.83321 1.20286 1.21351 1.20361 1.88397 1.72140 1.26936 1.38205 0.92183 0.90942 0.94144 0.90172 0.91187 0.84702 0.85355 0.83062 0.91974 0.92793 0.93459 0.92485 0.92731 0.92786 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.36 7.51 37.16 0.28 -3.08 16 2 C 0.11 2.23 0.79 -90.57 -0.07 2.16 16 3 C -0.03 -0.56 4.99 -27.88 -0.14 -0.70 16 4 C -0.14 -2.59 4.63 -36.00 -0.17 -2.75 16 5 C -0.10 -2.05 9.84 -41.21 -0.41 -2.45 16 6 C -0.11 -2.05 10.18 -41.21 -0.42 -2.47 16 7 C -0.23 -3.78 11.23 29.04 0.33 -3.46 16 8 S 0.05 0.90 21.80 -107.50 -2.34 -1.44 16 9 C -0.14 -2.36 4.92 -26.59 -0.13 -2.49 16 10 C -0.12 -2.13 5.71 -26.55 -0.15 -2.28 16 11 C -0.15 -3.07 5.36 -26.59 -0.14 -3.22 16 12 C 0.22 5.55 2.17 -27.83 -0.06 5.49 16 13 H 0.02 0.46 6.34 -51.93 -0.33 0.13 16 14 C -0.53 -14.73 8.79 -34.44 -0.30 -15.04 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 16 C 0.08 2.30 5.40 -17.82 -0.10 2.21 16 17 N -0.84 -23.94 12.84 55.43 0.71 -23.23 16 18 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 O -0.34 -8.22 8.72 -35.23 -0.31 -8.53 16 23 H 0.06 1.22 4.98 -51.93 -0.26 0.96 16 24 H 0.07 1.55 6.05 -51.93 -0.31 1.24 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.14 2.76 8.06 -52.49 -0.42 2.34 16 29 H 0.13 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.15 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.06 1.06 8.14 -51.94 -0.42 0.63 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.00 6.63 -51.93 -0.34 0.65 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 305.10 15.07 4.60 4.60 Total: -1.00 -28.96 305.10 -9.28 -38.24 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.44 Total: 2.18 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: -1.48 Total: -28.08 kcal Atomic # 7 Polarization: -23.94 SS G_CDS: 0.71 Total: -23.23 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.31 Total: -8.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.34 Total: -1.44 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.96 -9.28 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.598 kcal (2) G-P(sol) polarization free energy of solvation -28.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds