Wall clock time and date at job start Mon Mar 30 2020 06:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.48075 * 2 1 4 4 C 1.50694 * 109.46797 * 59.97588 * 3 2 1 5 5 C 1.33394 * 125.20046 * 89.72142 * 4 3 2 6 6 C 1.38423 * 114.91684 * 179.85776 * 5 4 3 7 7 C 1.33388 * 114.92381 * 0.42771 * 6 5 4 8 8 S 1.75881 * 109.59375 * 359.77197 * 7 6 5 9 9 C 1.53100 * 109.48223 * 239.97968 * 2 1 3 10 10 C 1.53181 * 109.15732 * 297.62692 * 9 2 1 11 11 C 1.53173 * 109.03676 * 303.01504 * 10 9 2 12 12 C 1.53096 * 109.16177 * 56.98730 * 11 10 9 13 13 H 1.08993 * 109.48033 * 62.37417 * 12 11 10 14 14 C 1.50702 * 109.47878 * 182.41096 * 12 11 10 15 15 H 1.08001 * 120.00314 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99588 * 180.02562 * 14 12 11 17 17 N 1.31511 * 120.00270 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99670 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46901 * 60.00020 * 18 16 14 20 20 H 1.48506 * 109.46791 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47149 * 299.99761 * 18 16 14 22 22 O 1.42899 * 109.48295 * 120.03461 * 2 1 3 23 23 H 1.08994 * 109.47465 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47047 * 300.02346 * 1 2 3 25 25 H 1.09004 * 109.47332 * 60.02184 * 1 2 3 26 26 H 1.08995 * 109.46719 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46950 * 299.97866 * 3 2 1 28 28 H 1.07998 * 122.54068 * 0.02562 * 5 4 3 29 29 H 1.07998 * 122.53901 * 180.20277 * 6 5 4 30 30 H 1.07998 * 125.20224 * 179.79560 * 7 6 5 31 31 H 1.08988 * 109.52177 * 177.72151 * 9 2 1 32 32 H 1.08996 * 109.57409 * 57.56015 * 9 2 1 33 33 H 1.08999 * 109.53619 * 183.15506 * 10 9 2 34 34 H 1.08997 * 109.61723 * 62.93401 * 10 9 2 35 35 H 1.08998 * 109.52657 * 297.07777 * 11 10 9 36 36 H 1.09003 * 109.57546 * 176.91826 * 11 10 9 37 37 H 0.97003 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 6 1.5375 2.1530 1.2301 5 6 2.1682 2.1965 2.4048 6 6 1.5142 2.9136 3.3917 7 6 0.3482 3.4451 3.0212 8 16 0.0259 3.0457 1.3390 9 6 2.0406 -0.7221 -1.2497 10 6 1.5757 -2.1812 -1.2124 11 6 2.0764 -2.8322 0.0805 12 6 1.5645 -2.0286 1.2788 13 1 0.4750 -2.0552 1.2955 14 6 2.1017 -2.6284 2.5526 15 1 2.7437 -3.4960 2.5123 16 6 1.7729 -2.0701 3.7697 17 7 0.9909 -1.0139 3.8189 18 14 2.4383 -2.8140 5.3488 19 1 3.9227 -2.7769 5.3263 20 1 1.9416 -2.0342 6.5109 21 1 1.9800 -4.2218 5.4643 22 8 2.0066 -0.6743 1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5142 0.8898 25 1 -0.3634 0.5135 -0.8902 26 1 3.1302 1.4422 0.0005 27 1 1.6773 1.9562 -0.8902 28 1 3.1184 1.7113 2.5722 29 1 1.9157 3.0308 4.3874 30 1 -0.2988 4.0313 3.6569 31 1 3.1297 -0.6873 -1.2710 32 1 1.6430 -0.2358 -2.1405 33 1 1.9826 -2.7155 -2.0710 34 1 0.4868 -2.2192 -1.2419 35 1 3.1664 -2.8400 0.0860 36 1 1.7045 -3.8550 0.1422 37 1 0.7592 -0.6214 4.6752 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690002027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:33 Heat of formation + Delta-G solvation = -39.588649 kcal Electronic energy + Delta-G solvation = -19231.202445 eV Core-core repulsion = 16485.127760 eV Total energy + Delta-G solvation = -2746.074685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54211 -38.41534 -35.41582 -34.14414 -33.69124 -30.97589 -29.15885 -27.56791 -26.69415 -24.32420 -23.52346 -22.19277 -19.98859 -19.56908 -18.56278 -17.87769 -16.68947 -16.51885 -16.24928 -16.00575 -15.57195 -14.91433 -14.35805 -14.33296 -13.94519 -13.64951 -13.45752 -13.16110 -12.94872 -12.90835 -12.76155 -12.70024 -12.54443 -12.36394 -12.09160 -11.99311 -11.61159 -11.55009 -11.48454 -11.18914 -10.71021 -10.35232 -9.49202 -9.25387 -9.07529 -8.01410 -6.20280 0.31281 0.94770 1.24348 1.41085 1.42410 1.49041 2.10886 2.44950 3.12771 3.67972 3.89023 4.06556 4.20472 4.25360 4.34382 4.44932 4.52815 4.55791 4.66757 4.83243 4.85031 4.87398 4.89336 4.91437 5.08354 5.11584 5.20455 5.24563 5.36900 5.42902 5.46599 5.56915 5.65680 5.68793 5.82824 5.91088 6.35753 6.78463 7.39854 7.54008 9.02112 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015168 B = 0.010210 C = 0.006705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.554121 B = 2741.616955 C = 4174.869589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 C -0.031 4.031 4 C -0.155 4.155 5 C -0.128 4.128 6 C -0.136 4.136 7 C -0.226 4.226 8 S 0.087 5.913 9 C -0.133 4.133 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.224 3.776 13 H -0.015 1.015 14 C -0.559 4.559 15 H 0.053 0.947 16 C 0.039 3.961 17 N -0.866 5.866 18 Si 0.943 3.057 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.272 1.272 22 O -0.364 6.364 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.180 0.820 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 7.659 -8.051 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 C -0.070 4.070 4 C -0.272 4.272 5 C -0.158 4.158 6 C -0.167 4.167 7 C -0.361 4.361 8 S 0.350 5.650 9 C -0.171 4.171 10 C -0.152 4.152 11 C -0.179 4.179 12 C 0.168 3.832 13 H 0.003 0.997 14 C -0.597 4.597 15 H 0.071 0.929 16 C -0.166 4.166 17 N -0.501 5.501 18 Si 0.768 3.232 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.197 1.197 22 O -0.284 6.284 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.198 0.802 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.011 8.215 -8.783 12.193 hybrid contribution 1.278 -1.122 2.239 2.811 sum -0.733 7.094 -6.544 9.679 Atomic orbital electron populations 1.22370 0.96969 1.01295 1.01687 1.21436 0.92835 0.91770 0.87774 1.20235 1.00979 0.92223 0.93608 1.24298 0.97999 1.04524 1.00340 1.19938 1.02259 1.00760 0.92824 1.20205 0.96156 0.99743 1.00578 1.25674 1.01669 1.09466 0.99305 1.83581 1.21966 1.50227 1.09256 1.22115 1.01115 0.95906 0.97940 1.21602 1.00506 0.95962 0.97143 1.22149 1.00061 0.99267 0.96398 1.19388 0.92272 0.79670 0.91877 0.99736 1.21303 1.33216 1.13441 0.91691 0.92907 1.25663 0.94614 0.94839 1.01443 1.70162 1.34019 1.20668 1.25269 0.85889 0.78791 0.78676 0.79798 1.20161 1.20980 1.19675 1.88295 1.72467 1.26552 1.41043 0.93812 0.93483 0.90812 0.90108 0.87895 0.86972 0.84457 0.80247 0.91801 0.89198 0.90430 0.92344 0.93427 0.92863 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.21 7.51 71.98 0.54 -5.67 16 2 C 0.10 3.88 0.79 -10.76 -0.01 3.87 16 3 C -0.03 -1.03 4.99 29.85 0.15 -0.88 16 4 C -0.15 -5.65 4.63 24.59 0.11 -5.54 16 5 C -0.13 -5.13 9.84 21.22 0.21 -4.92 16 6 C -0.14 -4.90 10.18 21.22 0.22 -4.68 16 7 C -0.23 -7.23 11.23 66.72 0.75 -6.48 16 8 S 0.09 2.77 21.80 -56.49 -1.23 1.54 16 9 C -0.13 -4.17 4.92 30.69 0.15 -4.02 16 10 C -0.11 -3.79 5.71 30.71 0.18 -3.62 16 11 C -0.14 -5.93 5.36 30.68 0.16 -5.76 16 12 C 0.22 11.50 2.17 29.88 0.06 11.57 16 13 H -0.01 -0.84 6.34 -2.39 -0.02 -0.85 16 14 C -0.56 -31.85 8.79 25.60 0.23 -31.62 16 15 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 16 C 0.04 2.21 5.40 84.66 0.46 2.67 16 17 N -0.87 -50.32 12.84 21.45 0.28 -50.04 16 18 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 O -0.36 -17.96 8.72 -148.98 -1.30 -19.26 16 23 H 0.04 1.76 4.98 -2.39 -0.01 1.75 16 24 H 0.05 1.99 6.05 -2.39 -0.01 1.97 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 30 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.92 6.63 -2.39 -0.02 1.91 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.60 305.10 4.02 -59.58 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 1.04 Total: 16.78 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.21 Total: -55.10 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.28 Total: -50.04 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.30 Total: -19.26 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.23 Total: 1.54 kcal Total: -63.60 4.02 -59.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.990 kcal (2) G-P(sol) polarization free energy of solvation -63.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds