Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47601 * 2 1 4 4 C 1.50705 * 109.47027 * 305.02167 * 3 2 1 5 5 C 1.33384 * 125.20012 * 90.00860 * 4 3 2 6 6 C 1.38424 * 114.91912 * 179.74894 * 5 4 3 7 7 C 1.33386 * 114.92331 * 0.42700 * 6 5 4 8 8 S 1.75886 * 125.20294 * 269.97565 * 4 3 2 9 9 C 1.53088 * 109.48270 * 120.02149 * 2 1 3 10 10 C 1.53185 * 109.16140 * 62.38733 * 9 2 1 11 11 C 1.53173 * 109.03716 * 56.98147 * 10 9 2 12 12 C 1.53100 * 109.16307 * 303.01592 * 11 10 9 13 13 H 1.09000 * 109.47911 * 297.63334 * 12 11 10 14 14 C 1.50697 * 109.48195 * 177.59274 * 12 11 10 15 15 H 1.08002 * 119.99811 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99989 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00185 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99788 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47218 * 89.99590 * 18 16 14 20 20 H 1.48497 * 109.46713 * 209.99483 * 18 16 14 21 21 H 1.48496 * 109.47202 * 329.99319 * 18 16 14 22 22 O 1.42902 * 109.41063 * 57.60936 * 12 11 10 23 23 H 1.09001 * 109.47568 * 60.00505 * 1 2 3 24 24 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47399 * 299.99765 * 1 2 3 26 26 H 1.09004 * 109.46625 * 185.02900 * 3 2 1 27 27 H 1.08992 * 109.47309 * 65.02679 * 3 2 1 28 28 H 1.07997 * 122.54195 * 359.97023 * 5 4 3 29 29 H 1.08001 * 122.53888 * 180.26703 * 6 5 4 30 30 H 1.08002 * 125.20849 * 179.86592 * 7 6 5 31 31 H 1.08997 * 109.52080 * 182.28766 * 9 2 1 32 32 H 1.08996 * 109.52151 * 302.48209 * 9 2 1 33 33 H 1.08995 * 109.54305 * 176.84873 * 10 9 2 34 34 H 1.08995 * 109.54096 * 297.10873 * 10 9 2 35 35 H 1.09000 * 109.52811 * 62.92088 * 11 10 9 36 36 H 1.08999 * 109.52197 * 183.11314 * 11 10 9 37 37 H 0.96997 * 120.00141 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4388 2.1879 -1.1636 5 6 0.2906 2.8660 -1.1317 6 6 -0.0593 3.4767 -2.3236 7 6 0.8002 3.2872 -3.3259 8 16 2.1442 2.2975 -2.7711 9 6 2.0406 -0.7221 1.2496 10 6 1.5760 -2.1813 1.2122 11 6 2.0770 -2.8321 -0.0807 12 6 1.5649 -2.0285 -1.2791 13 1 0.4754 -2.0552 -1.2958 14 6 2.1023 -2.6281 -2.5529 15 1 2.7443 -3.4956 -2.5125 16 6 1.7743 -2.0692 -3.7699 17 7 0.9921 -1.0131 -3.8191 18 14 2.4398 -2.8129 -5.3489 19 1 1.4942 -3.8436 -5.8477 20 1 2.5946 -1.7470 -6.3712 21 1 3.7597 -3.4393 -5.0832 22 8 2.0067 -0.6742 -1.1663 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.1264 1.4436 -0.0901 27 1 1.7523 1.9296 0.9315 28 1 -0.3180 2.9363 -0.2423 29 1 -0.9614 4.0602 -2.4344 30 1 0.6902 3.6847 -4.3241 31 1 3.1298 -0.6871 1.2710 32 1 1.6419 -0.2356 2.1398 33 1 1.9828 -2.7156 2.0707 34 1 0.4871 -2.2181 1.2408 35 1 3.1669 -2.8397 -0.0863 36 1 1.7044 -3.8546 -0.1419 37 1 0.7610 -0.6202 -4.6753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690002031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -24.174945 kcal Electronic energy + Delta-G solvation = -19198.515252 eV Core-core repulsion = 16453.108956 eV Total energy + Delta-G solvation = -2745.406297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.98689 -37.04013 -33.60534 -32.54194 -31.80590 -29.38239 -27.36812 -26.23954 -24.95648 -22.78984 -21.86176 -20.55819 -18.56717 -18.04666 -16.53016 -16.35826 -15.18911 -14.79811 -14.55375 -14.25661 -14.06695 -13.30128 -12.79381 -12.60340 -12.44563 -12.07789 -11.96136 -11.76433 -11.41094 -11.34828 -11.02759 -10.91469 -10.86548 -10.71534 -10.35678 -10.30903 -10.10162 -9.91021 -9.68092 -9.52517 -8.73494 -8.38947 -7.86973 -7.72771 -7.57368 -5.89786 -4.01534 1.74014 2.45281 2.83070 3.34334 3.39719 3.41679 3.44919 4.48615 4.96950 5.28120 5.46766 5.53695 5.62623 5.65586 5.69726 5.79724 6.03680 6.04919 6.07171 6.18604 6.19937 6.28118 6.34100 6.40845 6.54732 6.63173 6.73364 6.76341 6.90676 6.93793 6.98437 7.03534 7.16202 7.18152 7.63051 7.98648 8.39188 8.87646 9.23606 9.66912 11.15296 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.010801 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.747685 B = 2591.647469 C = 4061.616200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 C -0.035 4.035 4 C -0.142 4.142 5 C -0.163 4.163 6 C -0.140 4.140 7 C -0.241 4.241 8 S 0.171 5.829 9 C -0.137 4.137 10 C -0.120 4.120 11 C -0.145 4.145 12 C 0.221 3.779 13 H 0.017 0.983 14 C -0.531 4.531 15 H 0.059 0.941 16 C 0.084 3.916 17 N -0.842 5.842 18 Si 0.882 3.118 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.275 1.275 22 O -0.340 6.340 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.150 0.850 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 6.935 6.666 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.072 3.928 3 C -0.074 4.074 4 C -0.260 4.260 5 C -0.193 4.193 6 C -0.171 4.171 7 C -0.377 4.377 8 S 0.437 5.563 9 C -0.175 4.175 10 C -0.157 4.157 11 C -0.183 4.183 12 C 0.166 3.834 13 H 0.035 0.965 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.123 4.123 17 N -0.477 5.477 18 Si 0.709 3.291 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 O -0.259 6.259 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.168 0.832 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.944 6.603 5.702 8.775 hybrid contribution -1.289 -0.056 -0.119 1.295 sum -0.345 6.546 5.583 8.611 Atomic orbital electron populations 1.22387 0.96857 1.02017 1.01262 1.21106 0.92817 0.90626 0.88254 1.20156 1.00001 0.93502 0.93723 1.24221 1.00099 1.02962 0.98750 1.19833 0.97557 1.02843 0.99113 1.19879 1.00755 1.03561 0.92929 1.25531 1.01964 1.07191 1.03031 1.84405 1.22205 1.45690 1.04006 1.22138 1.00880 0.96506 0.98019 1.21633 1.00354 0.95439 0.98320 1.22277 1.00659 0.99549 0.95813 1.19660 0.94285 0.78321 0.91160 0.96522 1.20925 1.33131 1.13009 0.89753 0.92270 1.24980 0.94362 0.94365 0.98605 1.70042 1.33149 1.19628 1.24847 0.86786 0.79527 0.78885 0.83852 1.20831 1.21203 1.19968 1.88388 1.72218 1.27087 1.38231 0.91083 0.92402 0.94191 0.90939 0.90384 0.85651 0.85804 0.83221 0.92019 0.92774 0.93470 0.92484 0.92733 0.92785 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 7.33 37.16 0.27 -2.95 16 2 C 0.11 2.21 0.79 -90.57 -0.07 2.14 16 3 C -0.03 -0.60 5.02 -27.88 -0.14 -0.74 16 4 C -0.14 -2.61 4.74 -36.00 -0.17 -2.79 16 5 C -0.16 -2.78 8.44 -41.21 -0.35 -3.13 16 6 C -0.14 -2.31 10.18 -41.21 -0.42 -2.73 16 7 C -0.24 -4.16 11.23 29.04 0.33 -3.84 16 8 S 0.17 3.31 23.33 -107.50 -2.51 0.80 16 9 C -0.14 -2.35 4.92 -26.59 -0.13 -2.48 16 10 C -0.12 -2.12 5.72 -26.55 -0.15 -2.27 16 11 C -0.15 -3.07 5.36 -26.59 -0.14 -3.21 16 12 C 0.22 5.54 2.17 -27.83 -0.06 5.48 16 13 H 0.02 0.46 6.34 -51.93 -0.33 0.14 16 14 C -0.53 -14.69 8.79 -34.44 -0.30 -14.99 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.08 2.32 5.40 -17.82 -0.10 2.22 16 17 N -0.84 -23.59 12.84 55.43 0.71 -22.88 16 18 Si 0.88 21.26 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.34 -8.25 9.02 -35.23 -0.32 -8.57 16 23 H 0.07 1.52 6.20 -51.93 -0.32 1.20 16 24 H 0.06 1.17 4.98 -51.93 -0.26 0.91 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.99 6.62 -51.93 -0.34 0.65 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -28.84 305.64 -9.41 -38.25 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.45 Total: 0.83 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -1.44 Total: -29.29 kcal Atomic # 7 Polarization: -23.59 SS G_CDS: 0.71 Total: -22.88 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.32 Total: -8.57 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -2.51 Total: 0.80 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.84 -9.41 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.071 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds