Wall clock time and date at job start Mon Mar 30 2020 06:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47601 * 2 1 4 4 C 1.50705 * 109.47027 * 305.02167 * 3 2 1 5 5 C 1.33384 * 125.20012 * 90.00860 * 4 3 2 6 6 C 1.38424 * 114.91912 * 179.74894 * 5 4 3 7 7 C 1.33386 * 114.92331 * 0.42700 * 6 5 4 8 8 S 1.75886 * 125.20294 * 269.97565 * 4 3 2 9 9 C 1.53088 * 109.48270 * 120.02149 * 2 1 3 10 10 C 1.53185 * 109.16140 * 62.38733 * 9 2 1 11 11 C 1.53173 * 109.03716 * 56.98147 * 10 9 2 12 12 C 1.53100 * 109.16307 * 303.01592 * 11 10 9 13 13 H 1.09000 * 109.47911 * 297.63334 * 12 11 10 14 14 C 1.50697 * 109.48195 * 177.59274 * 12 11 10 15 15 H 1.08002 * 119.99811 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99989 * 180.02562 * 14 12 11 17 17 N 1.31512 * 120.00185 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99788 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47218 * 89.99590 * 18 16 14 20 20 H 1.48497 * 109.46713 * 209.99483 * 18 16 14 21 21 H 1.48496 * 109.47202 * 329.99319 * 18 16 14 22 22 O 1.42902 * 109.41063 * 57.60936 * 12 11 10 23 23 H 1.09001 * 109.47568 * 60.00505 * 1 2 3 24 24 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47399 * 299.99765 * 1 2 3 26 26 H 1.09004 * 109.46625 * 185.02900 * 3 2 1 27 27 H 1.08992 * 109.47309 * 65.02679 * 3 2 1 28 28 H 1.07997 * 122.54195 * 359.97023 * 5 4 3 29 29 H 1.08001 * 122.53888 * 180.26703 * 6 5 4 30 30 H 1.08002 * 125.20849 * 179.86592 * 7 6 5 31 31 H 1.08997 * 109.52080 * 182.28766 * 9 2 1 32 32 H 1.08996 * 109.52151 * 302.48209 * 9 2 1 33 33 H 1.08995 * 109.54305 * 176.84873 * 10 9 2 34 34 H 1.08995 * 109.54096 * 297.10873 * 10 9 2 35 35 H 1.09000 * 109.52811 * 62.92088 * 11 10 9 36 36 H 1.08999 * 109.52197 * 183.11314 * 11 10 9 37 37 H 0.96997 * 120.00141 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4388 2.1879 -1.1636 5 6 0.2906 2.8660 -1.1317 6 6 -0.0593 3.4767 -2.3236 7 6 0.8002 3.2872 -3.3259 8 16 2.1442 2.2975 -2.7711 9 6 2.0406 -0.7221 1.2496 10 6 1.5760 -2.1813 1.2122 11 6 2.0770 -2.8321 -0.0807 12 6 1.5649 -2.0285 -1.2791 13 1 0.4754 -2.0552 -1.2958 14 6 2.1023 -2.6281 -2.5529 15 1 2.7443 -3.4956 -2.5125 16 6 1.7743 -2.0692 -3.7699 17 7 0.9921 -1.0131 -3.8191 18 14 2.4398 -2.8129 -5.3489 19 1 1.4942 -3.8436 -5.8477 20 1 2.5946 -1.7470 -6.3712 21 1 3.7597 -3.4393 -5.0832 22 8 2.0067 -0.6742 -1.1663 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.1264 1.4436 -0.0901 27 1 1.7523 1.9296 0.9315 28 1 -0.3180 2.9363 -0.2423 29 1 -0.9614 4.0602 -2.4344 30 1 0.6902 3.6847 -4.3241 31 1 3.1298 -0.6871 1.2710 32 1 1.6419 -0.2356 2.1398 33 1 1.9828 -2.7156 2.0707 34 1 0.4871 -2.2181 1.2408 35 1 3.1669 -2.8397 -0.0863 36 1 1.7044 -3.8546 -0.1419 37 1 0.7610 -0.6202 -4.6753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690002031.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:35 Heat of formation + Delta-G solvation = -39.158809 kcal Electronic energy + Delta-G solvation = -19199.165002 eV Core-core repulsion = 16453.108956 eV Total energy + Delta-G solvation = -2746.056046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.55896 -38.42063 -35.35284 -34.13298 -33.66928 -30.92784 -29.01009 -27.74170 -26.65692 -24.25328 -23.51844 -22.13450 -19.91921 -19.60874 -18.54821 -17.76798 -16.73706 -16.65542 -16.03750 -15.95232 -15.56768 -14.90868 -14.33957 -14.32033 -13.86269 -13.62431 -13.38150 -13.21365 -12.93143 -12.85131 -12.76906 -12.66673 -12.52305 -12.28989 -12.07237 -11.96795 -11.59175 -11.49828 -11.31443 -11.14984 -10.69360 -10.32835 -9.48501 -9.23291 -9.03615 -7.98666 -6.16792 0.37476 1.06866 1.40519 1.42850 1.46475 1.51229 2.08092 2.46563 3.15473 3.70020 3.90969 4.09202 4.21926 4.26888 4.36556 4.38496 4.55844 4.58782 4.71030 4.80605 4.87718 4.88925 4.91921 4.94278 5.09700 5.11044 5.21422 5.26752 5.37899 5.42899 5.46424 5.58635 5.60758 5.71781 5.87317 5.93171 6.37880 6.80637 7.41409 7.56361 9.04304 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014728 B = 0.010801 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.747685 B = 2591.647469 C = 4061.616200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 C -0.032 4.032 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.141 4.141 7 C -0.241 4.241 8 S 0.092 5.908 9 C -0.133 4.133 10 C -0.115 4.115 11 C -0.141 4.141 12 C 0.225 3.775 13 H -0.014 1.014 14 C -0.560 4.560 15 H 0.051 0.949 16 C 0.042 3.958 17 N -0.858 5.858 18 Si 0.938 3.062 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.274 1.274 22 O -0.366 6.366 23 H 0.042 0.958 24 H 0.039 0.961 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 7.743 8.401 11.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 C -0.071 4.071 4 C -0.269 4.269 5 C -0.190 4.190 6 C -0.172 4.172 7 C -0.377 4.377 8 S 0.357 5.643 9 C -0.170 4.170 10 C -0.152 4.152 11 C -0.179 4.179 12 C 0.169 3.831 13 H 0.003 0.997 14 C -0.597 4.597 15 H 0.069 0.931 16 C -0.163 4.163 17 N -0.494 5.494 18 Si 0.765 3.235 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.199 1.199 22 O -0.285 6.285 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.186 0.814 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.302 7.409 7.447 10.509 hybrid contribution -1.153 -0.263 -0.634 1.342 sum -0.851 7.146 6.813 9.910 Atomic orbital electron populations 1.22270 0.96673 1.00965 1.01562 1.21466 0.93075 0.91674 0.87742 1.20233 0.99637 0.92259 0.94994 1.24385 1.00753 1.03901 0.97878 1.20194 0.96976 1.01631 1.00179 1.20293 1.01372 1.03122 0.92424 1.25756 1.00971 1.06699 1.04256 1.84632 1.24908 1.47965 1.06769 1.22113 1.00976 0.95902 0.98047 1.21602 1.00523 0.95988 0.97074 1.22153 0.99974 0.99286 0.96499 1.19375 0.92283 0.79595 0.91821 0.99667 1.21286 1.33324 1.13431 0.91678 0.93101 1.25610 0.94689 0.94819 1.01210 1.70159 1.33805 1.20318 1.25077 0.85895 0.78952 0.78206 0.80497 1.20143 1.21038 1.19865 1.88290 1.72546 1.26634 1.41074 0.93906 0.94159 0.90517 0.91534 0.86574 0.83064 0.82748 0.81409 0.92045 0.89031 0.90522 0.92276 0.93572 0.92912 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 7.33 71.98 0.53 -5.25 16 2 C 0.10 3.78 0.79 -10.76 -0.01 3.77 16 3 C -0.03 -1.06 5.02 29.85 0.15 -0.91 16 4 C -0.15 -5.41 4.74 24.59 0.12 -5.29 16 5 C -0.16 -5.07 8.44 21.22 0.18 -4.90 16 6 C -0.14 -4.37 10.18 21.22 0.22 -4.16 16 7 C -0.24 -8.16 11.23 66.72 0.75 -7.41 16 8 S 0.09 3.62 23.33 -56.49 -1.32 2.31 16 9 C -0.13 -4.12 4.92 30.69 0.15 -3.97 16 10 C -0.11 -3.77 5.72 30.71 0.18 -3.59 16 11 C -0.14 -5.95 5.36 30.69 0.16 -5.78 16 12 C 0.23 11.53 2.17 29.88 0.06 11.59 16 13 H -0.01 -0.79 6.34 -2.39 -0.02 -0.81 16 14 C -0.56 -31.87 8.79 25.60 0.23 -31.64 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.04 2.36 5.40 84.66 0.46 2.82 16 17 N -0.86 -49.38 12.84 21.45 0.28 -49.11 16 18 Si 0.94 44.58 29.54 68.60 2.03 46.61 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 22 O -0.37 -17.94 9.02 -148.98 -1.34 -19.29 16 23 H 0.04 1.79 6.20 -2.39 -0.01 1.78 16 24 H 0.04 1.59 4.98 -2.39 -0.01 1.58 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 29 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.17 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -64.00 305.64 3.85 -60.15 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 1.04 Total: 14.05 kcal Atomic # 6 Polarization: -57.88 SS G_CDS: 3.17 Total: -54.71 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.28 Total: -49.11 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.34 Total: -19.29 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.32 Total: 2.31 kcal Total: -64.00 3.85 -60.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002031.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.988 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds