Wall clock time and date at job start Mon Mar 30 2020 06:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.35285 * 2 1 4 4 C 1.50705 * 109.47193 * 57.85961 * 3 2 1 5 5 C 1.38421 * 122.53772 * 89.99853 * 4 3 2 6 6 C 1.33387 * 114.92161 * 179.97438 * 5 4 3 7 7 S 1.75888 * 109.59086 * 0.02562 * 6 5 4 8 8 C 1.33381 * 122.53797 * 269.70522 * 4 3 2 9 9 C 1.54952 * 110.30657 * 237.86157 * 2 1 3 10 10 C 1.55308 * 100.93825 * 277.52803 * 9 2 1 11 11 C 1.54388 * 102.43740 * 325.76522 * 10 9 2 12 12 C 1.53000 * 109.82889 * 261.94499 * 11 10 9 13 13 C 1.50702 * 109.82883 * 140.97109 * 11 10 9 14 14 H 1.08003 * 119.99983 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99793 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99996 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00065 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47289 * 120.00235 * 17 15 13 20 20 H 1.48498 * 109.47179 * 240.00290 * 17 15 13 21 21 O 1.43640 * 110.31187 * 122.14589 * 2 1 3 22 22 H 1.08995 * 109.47440 * 182.14512 * 1 2 3 23 23 H 1.09007 * 109.46789 * 302.13819 * 1 2 3 24 24 H 1.08996 * 109.47254 * 62.13977 * 1 2 3 25 25 H 1.08998 * 109.47546 * 177.85960 * 3 2 1 26 26 H 1.09001 * 109.47653 * 297.85885 * 3 2 1 27 27 H 1.08006 * 122.54275 * 0.02562 * 5 4 3 28 28 H 1.07998 * 125.20441 * 180.02562 * 6 5 4 29 29 H 1.07994 * 125.20757 * 0.03235 * 8 4 3 30 30 H 1.09000 * 111.12405 * 159.60796 * 9 2 1 31 31 H 1.08998 * 111.15965 * 35.45722 * 9 2 1 32 32 H 1.09002 * 110.84945 * 84.05895 * 10 9 2 33 33 H 1.09001 * 110.84573 * 207.47820 * 10 9 2 34 34 H 1.09006 * 109.46954 * 60.00074 * 12 11 10 35 35 H 1.09003 * 109.46999 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.47602 * 300.00071 * 12 11 10 37 37 H 0.97006 * 119.99984 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4344 0.0000 4 6 1.5281 2.1683 1.2031 5 6 2.1908 2.1872 2.4183 6 6 1.5822 2.8835 3.3795 7 16 0.0869 3.5679 2.7555 8 6 0.3841 2.8536 1.1760 9 6 2.0678 -0.7731 -1.2305 10 6 1.9827 -2.2370 -0.7191 11 6 2.2993 -2.0830 0.7841 12 6 3.7726 -2.4068 1.0400 13 6 1.4235 -3.0088 1.5885 14 1 0.7100 -3.6472 1.0886 15 6 1.5338 -3.0416 2.9624 16 7 2.4029 -2.2645 3.5710 17 14 0.4488 -4.1896 3.9594 18 1 -0.4381 -4.9517 3.0441 19 1 1.3004 -5.1348 4.7253 20 1 -0.3791 -3.3944 4.9015 21 8 2.0286 -0.7168 1.1406 22 1 -0.3634 -1.0269 0.0385 23 1 -0.3633 0.5467 0.8703 24 1 -0.3633 0.4802 -0.9085 25 1 3.1513 1.4180 0.0384 26 1 1.7383 1.9422 -0.9085 27 1 3.1298 1.6774 2.5760 28 1 1.9512 3.0081 4.3868 29 1 -0.2621 2.9526 0.3164 30 1 3.0979 -0.4931 -1.4509 31 1 1.4278 -0.6229 -2.1000 32 1 0.9810 -2.6414 -0.8651 33 1 2.7274 -2.8634 -1.2102 34 1 4.3996 -1.7227 0.4680 35 1 3.9898 -2.2958 2.1024 36 1 3.9783 -3.4319 0.7319 37 1 2.4803 -2.2873 4.5377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690004016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:57 Heat of formation + Delta-G solvation = -18.263905 kcal Electronic energy + Delta-G solvation = -19164.803807 eV Core-core repulsion = 16419.653833 eV Total energy + Delta-G solvation = -2745.149975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13149 -37.36044 -33.50889 -31.58764 -30.92939 -29.27042 -27.15582 -27.00780 -25.19641 -23.24967 -22.02356 -19.57651 -19.05683 -18.14705 -16.99012 -16.37677 -15.01303 -14.76691 -14.70478 -14.19843 -13.30587 -13.01442 -12.79521 -12.55451 -12.17892 -12.08871 -11.88925 -11.60921 -11.53391 -11.31320 -11.03523 -10.99839 -10.85223 -10.58021 -10.48573 -10.38676 -10.21466 -9.98103 -9.77392 -9.30647 -9.00548 -8.42697 -8.27923 -7.92785 -7.70192 -5.88762 -4.03739 1.49403 2.12598 2.42221 3.29021 3.31905 3.40616 3.43309 4.47111 4.90295 5.30494 5.40756 5.50201 5.56260 5.66191 5.77970 5.83767 5.94352 6.11192 6.16112 6.19896 6.26029 6.46486 6.47188 6.60729 6.61196 6.73021 6.77666 6.80440 6.95497 6.99476 7.04470 7.15887 7.20332 7.50041 7.84857 8.16536 8.44636 8.73360 9.13410 9.66897 11.12670 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.008064 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.725841 B = 3471.505627 C = 4308.605191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 C -0.053 4.053 4 C -0.067 4.067 5 C -0.097 4.097 6 C -0.214 4.214 7 S 0.046 5.954 8 C -0.220 4.220 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.230 3.770 12 C -0.138 4.138 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.083 3.917 16 N -0.857 5.857 17 Si 0.882 3.118 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.284 1.284 21 O -0.337 6.337 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.040 0.960 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.010 0.990 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 9.185 -5.520 10.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.068 3.932 3 C -0.093 4.093 4 C -0.080 4.080 5 C -0.127 4.127 6 C -0.349 4.349 7 S 0.308 5.692 8 C -0.354 4.354 9 C -0.185 4.185 10 C -0.178 4.178 11 C 0.192 3.808 12 C -0.196 4.196 13 C -0.567 4.567 14 H 0.074 0.926 15 C -0.122 4.122 16 N -0.494 5.494 17 Si 0.710 3.290 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.210 1.210 21 O -0.256 6.256 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.052 0.948 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.076 10.228 -4.496 11.363 hybrid contribution 0.339 -1.714 -0.106 1.750 sum -1.737 8.514 -4.602 9.833 Atomic orbital electron populations 1.22168 0.96307 1.02449 1.00244 1.21923 0.92953 0.90511 0.87842 1.20517 1.00581 0.94270 0.93933 1.18819 0.94803 0.97710 0.96634 1.20143 1.02157 0.98410 0.91953 1.25412 0.98882 1.07077 1.03490 1.83907 1.24672 1.54558 1.06055 1.25248 1.02296 1.07609 1.00287 1.23252 1.00387 0.97271 0.97624 1.23200 1.00986 0.94583 0.99024 1.19682 0.92616 0.80545 0.87908 1.21963 0.96309 0.97083 1.04198 1.21274 1.21792 1.21945 0.91716 0.92626 1.24945 0.94698 0.94667 0.97875 1.69950 1.33855 1.37016 1.08592 0.86725 0.80913 0.80962 0.80441 1.19867 1.21079 1.21030 1.88870 1.83842 1.23125 1.29803 0.91924 0.92217 0.94077 0.90832 0.91216 0.83914 0.82490 0.82627 0.91743 0.92054 0.91936 0.92510 0.97086 0.89176 0.94796 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.35 37.16 0.31 -2.58 16 2 C 0.11 2.10 0.85 -89.59 -0.08 2.03 16 3 C -0.05 -0.88 4.83 -27.88 -0.13 -1.01 16 4 C -0.07 -1.16 4.23 -106.25 -0.45 -1.61 16 5 C -0.10 -1.74 9.85 -41.21 -0.41 -2.15 16 6 C -0.21 -3.49 11.23 29.04 0.33 -3.17 16 7 S 0.05 0.68 23.34 -107.50 -2.51 -1.82 16 8 C -0.22 -3.42 9.29 29.03 0.27 -3.15 16 9 C -0.15 -2.61 6.05 -24.48 -0.15 -2.76 16 10 C -0.14 -2.88 5.67 -24.78 -0.14 -3.02 16 11 C 0.23 5.62 0.82 -91.04 -0.07 5.54 16 12 C -0.14 -3.32 8.52 37.16 0.32 -3.01 16 13 C -0.53 -14.44 8.23 -34.44 -0.28 -14.72 16 14 H 0.06 1.52 7.52 -52.48 -0.39 1.12 16 15 C 0.08 2.30 5.26 -17.82 -0.09 2.21 16 16 N -0.86 -24.35 10.93 55.43 0.61 -23.74 16 17 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 O -0.34 -8.19 9.27 -35.23 -0.33 -8.52 16 22 H 0.06 1.29 7.53 -51.93 -0.39 0.90 16 23 H 0.06 1.18 6.17 -51.93 -0.32 0.86 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 26 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 27 H 0.14 2.69 8.06 -52.48 -0.42 2.27 16 28 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 29 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 30 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 32 H 0.06 1.30 7.34 -51.93 -0.38 0.92 16 33 H 0.06 1.09 7.82 -51.93 -0.41 0.68 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 2.41 6.01 -51.93 -0.31 2.10 16 36 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -28.99 309.22 -8.73 -37.72 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -5.56 Total: 2.72 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: -0.58 Total: -27.40 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.61 Total: -23.74 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.33 Total: -8.52 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.99 -8.73 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.453 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds