Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 110.35285 * 2 1 4 4 C 1.50705 * 109.47193 * 57.85961 * 3 2 1 5 5 C 1.38421 * 122.53772 * 89.99853 * 4 3 2 6 6 C 1.33387 * 114.92161 * 179.97438 * 5 4 3 7 7 S 1.75888 * 109.59086 * 0.02562 * 6 5 4 8 8 C 1.33381 * 122.53797 * 269.70522 * 4 3 2 9 9 C 1.54952 * 110.30657 * 237.86157 * 2 1 3 10 10 C 1.55308 * 100.93825 * 277.52803 * 9 2 1 11 11 C 1.54388 * 102.43740 * 325.76522 * 10 9 2 12 12 C 1.53000 * 109.82889 * 261.94499 * 11 10 9 13 13 C 1.50702 * 109.82883 * 140.97109 * 11 10 9 14 14 H 1.08003 * 119.99983 * 0.02562 * 13 11 10 15 15 C 1.37875 * 119.99793 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99996 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00065 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46955 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47289 * 120.00235 * 17 15 13 20 20 H 1.48498 * 109.47179 * 240.00290 * 17 15 13 21 21 O 1.43640 * 110.31187 * 122.14589 * 2 1 3 22 22 H 1.08995 * 109.47440 * 182.14512 * 1 2 3 23 23 H 1.09007 * 109.46789 * 302.13819 * 1 2 3 24 24 H 1.08996 * 109.47254 * 62.13977 * 1 2 3 25 25 H 1.08998 * 109.47546 * 177.85960 * 3 2 1 26 26 H 1.09001 * 109.47653 * 297.85885 * 3 2 1 27 27 H 1.08006 * 122.54275 * 0.02562 * 5 4 3 28 28 H 1.07998 * 125.20441 * 180.02562 * 6 5 4 29 29 H 1.07994 * 125.20757 * 0.03235 * 8 4 3 30 30 H 1.09000 * 111.12405 * 159.60796 * 9 2 1 31 31 H 1.08998 * 111.15965 * 35.45722 * 9 2 1 32 32 H 1.09002 * 110.84945 * 84.05895 * 10 9 2 33 33 H 1.09001 * 110.84573 * 207.47820 * 10 9 2 34 34 H 1.09006 * 109.46954 * 60.00074 * 12 11 10 35 35 H 1.09003 * 109.46999 * 179.97438 * 12 11 10 36 36 H 1.08999 * 109.47602 * 300.00071 * 12 11 10 37 37 H 0.97006 * 119.99984 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0621 1.4344 0.0000 4 6 1.5281 2.1683 1.2031 5 6 2.1908 2.1872 2.4183 6 6 1.5822 2.8835 3.3795 7 16 0.0869 3.5679 2.7555 8 6 0.3841 2.8536 1.1760 9 6 2.0678 -0.7731 -1.2305 10 6 1.9827 -2.2370 -0.7191 11 6 2.2993 -2.0830 0.7841 12 6 3.7726 -2.4068 1.0400 13 6 1.4235 -3.0088 1.5885 14 1 0.7100 -3.6472 1.0886 15 6 1.5338 -3.0416 2.9624 16 7 2.4029 -2.2645 3.5710 17 14 0.4488 -4.1896 3.9594 18 1 -0.4381 -4.9517 3.0441 19 1 1.3004 -5.1348 4.7253 20 1 -0.3791 -3.3944 4.9015 21 8 2.0286 -0.7168 1.1406 22 1 -0.3634 -1.0269 0.0385 23 1 -0.3633 0.5467 0.8703 24 1 -0.3633 0.4802 -0.9085 25 1 3.1513 1.4180 0.0384 26 1 1.7383 1.9422 -0.9085 27 1 3.1298 1.6774 2.5760 28 1 1.9512 3.0081 4.3868 29 1 -0.2621 2.9526 0.3164 30 1 3.0979 -0.4931 -1.4509 31 1 1.4278 -0.6229 -2.1000 32 1 0.9810 -2.6414 -0.8651 33 1 2.7274 -2.8634 -1.2102 34 1 4.3996 -1.7227 0.4680 35 1 3.9898 -2.2958 2.1024 36 1 3.9783 -3.4319 0.7319 37 1 2.4803 -2.2873 4.5377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690004016.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -33.275432 kcal Electronic energy + Delta-G solvation = -19165.454756 eV Core-core repulsion = 16419.653833 eV Total energy + Delta-G solvation = -2745.800923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66135 -38.75565 -35.31191 -33.34244 -32.61928 -30.73763 -28.73737 -28.37020 -27.21201 -24.77158 -23.42787 -21.26752 -20.65199 -19.44809 -18.36169 -18.21496 -16.71450 -16.40215 -16.22272 -15.76898 -15.11001 -14.45416 -14.29440 -13.86803 -13.79115 -13.57054 -13.49985 -13.12895 -13.02103 -12.95102 -12.81088 -12.66772 -12.39201 -12.31999 -12.17704 -11.99847 -11.86859 -11.64516 -11.26899 -10.94343 -10.80891 -10.50338 -9.66469 -9.49268 -9.05506 -7.96254 -6.17021 0.23326 0.90945 1.17319 1.36879 1.40380 1.49168 1.96974 2.44764 3.16006 3.59511 3.99616 4.09198 4.22174 4.31678 4.35237 4.52339 4.62720 4.67964 4.79075 4.80751 4.86898 4.92809 5.03578 5.05002 5.09080 5.15045 5.22986 5.29583 5.33771 5.38828 5.59304 5.65346 5.67395 5.78746 5.82973 6.20740 6.43086 6.77554 7.29474 7.58419 9.03004 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.008064 C = 0.006497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.725841 B = 3471.505627 C = 4308.605191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.096 3.904 3 C -0.046 4.046 4 C -0.089 4.089 5 C -0.123 4.123 6 C -0.227 4.227 7 S 0.084 5.916 8 C -0.216 4.216 9 C -0.135 4.135 10 C -0.138 4.138 11 C 0.218 3.782 12 C -0.131 4.131 13 C -0.544 4.544 14 H 0.046 0.954 15 C 0.037 3.963 16 N -0.882 5.882 17 Si 0.935 3.065 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.288 1.288 21 O -0.367 6.367 22 H 0.035 0.965 23 H 0.044 0.956 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.120 0.880 28 H 0.170 0.830 29 H 0.182 0.818 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.027 0.973 35 H 0.058 0.942 36 H 0.035 0.965 37 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.135 10.220 -7.164 12.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.086 4.086 4 C -0.101 4.101 5 C -0.154 4.154 6 C -0.362 4.362 7 S 0.347 5.653 8 C -0.351 4.351 9 C -0.172 4.172 10 C -0.176 4.176 11 C 0.180 3.820 12 C -0.189 4.189 13 C -0.582 4.582 14 H 0.064 0.936 15 C -0.165 4.165 16 N -0.520 5.520 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.214 1.214 21 O -0.287 6.287 22 H 0.054 0.946 23 H 0.063 0.937 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.138 0.862 28 H 0.187 0.813 29 H 0.200 0.800 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.184 11.260 -6.150 13.219 hybrid contribution 0.648 -1.989 0.415 2.133 sum -2.536 9.271 -5.734 11.192 Atomic orbital electron populations 1.22100 0.95970 1.00919 1.01490 1.22267 0.93332 0.91761 0.87114 1.20487 1.00213 0.92678 0.95239 1.18891 0.95697 0.98980 0.96558 1.20176 1.02147 0.99625 0.93418 1.25695 0.99803 1.06719 1.03957 1.83749 1.22887 1.53354 1.05313 1.25595 1.01753 1.06346 1.01397 1.23223 1.01809 0.94391 0.97817 1.23092 1.00797 0.97030 0.96660 1.19693 0.91801 0.80561 0.89951 1.21844 0.97077 0.97634 1.02314 1.21632 1.21812 1.22434 0.92333 0.93553 1.25586 0.95888 0.96046 0.98955 1.70093 1.35097 1.38348 1.08413 0.85884 0.79481 0.79388 0.79058 1.19372 1.20516 1.21397 1.88807 1.84286 1.22989 1.32638 0.94575 0.93699 0.90204 0.91441 0.87738 0.86183 0.81297 0.80045 0.90549 0.88851 0.92666 0.91416 0.95376 0.92343 0.94576 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 8.35 71.98 0.60 -4.61 16 2 C 0.10 3.52 0.85 -10.13 -0.01 3.51 16 3 C -0.05 -1.44 4.83 29.85 0.14 -1.29 16 4 C -0.09 -2.95 4.23 -20.92 -0.09 -3.04 16 5 C -0.12 -4.50 9.85 21.22 0.21 -4.29 16 6 C -0.23 -7.34 11.23 66.72 0.75 -6.59 16 7 S 0.08 2.35 23.34 -56.49 -1.32 1.03 16 8 C -0.22 -6.17 9.29 66.72 0.62 -5.55 16 9 C -0.13 -4.36 6.05 32.05 0.19 -4.16 16 10 C -0.14 -5.48 5.67 31.86 0.18 -5.30 16 11 C 0.22 10.67 0.82 -11.07 -0.01 10.66 16 12 C -0.13 -6.37 8.52 71.98 0.61 -5.76 16 13 C -0.54 -30.11 8.23 25.60 0.21 -29.90 16 14 H 0.05 2.57 7.52 -2.91 -0.02 2.54 16 15 C 0.04 2.11 5.26 84.65 0.45 2.55 16 16 N -0.88 -51.50 10.93 21.45 0.23 -51.26 16 17 Si 0.94 44.64 29.54 68.60 2.03 46.67 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 O -0.37 -17.92 9.27 -148.98 -1.38 -19.31 16 22 H 0.04 1.44 7.53 -2.39 -0.02 1.42 16 23 H 0.04 1.69 6.17 -2.38 -0.01 1.68 16 24 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 2.14 8.13 -2.39 -0.02 2.13 16 26 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 27 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 28 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 29 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 30 H 0.08 2.29 8.06 -2.39 -0.02 2.27 16 31 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.05 2.24 7.34 -2.39 -0.02 2.22 16 33 H 0.07 2.49 7.82 -2.39 -0.02 2.47 16 34 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.06 3.22 6.01 -2.39 -0.01 3.20 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 Total: -1.00 -63.31 309.22 4.46 -58.85 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 1.04 Total: 17.78 kcal Atomic # 6 Polarization: -57.63 SS G_CDS: 3.86 Total: -53.77 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.23 Total: -51.26 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.38 Total: -19.31 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.32 Total: 1.03 kcal Total: -63.31 4.46 -58.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004016.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.578 kcal (2) G-P(sol) polarization free energy of solvation -63.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds