Wall clock time and date at job start Mon Mar 30 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.90077 * 2 1 4 4 H 1.07999 * 120.00001 * 239.06878 * 3 2 1 5 5 C 1.37880 * 119.99976 * 59.06054 * 3 2 1 6 6 N 1.31517 * 119.99870 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 120.00118 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47279 * 60.00223 * 7 5 3 9 9 H 1.48497 * 109.47163 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46987 * 300.00473 * 7 5 3 11 11 C 1.54384 * 109.82953 * 239.06217 * 2 1 3 12 12 C 1.55304 * 102.25492 * 219.12964 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 C 1.53002 * 110.31095 * 82.49036 * 13 12 11 15 15 C 1.53005 * 110.30859 * 204.65983 * 13 12 11 16 16 C 1.50700 * 109.46962 * 184.99858 * 15 13 12 17 17 C 1.38423 * 122.53703 * 90.00181 * 16 15 13 18 18 C 1.33397 * 114.92287 * 179.97438 * 17 16 15 19 19 S 1.75879 * 109.58923 * 359.97438 * 18 17 16 20 20 C 1.33390 * 122.54341 * 269.70689 * 16 15 13 21 21 O 1.43240 * 109.82863 * 120.93524 * 2 1 3 22 22 H 1.09001 * 109.47612 * 180.93102 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.93530 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.93160 * 1 2 3 25 25 H 0.97003 * 119.99471 * 179.97438 * 6 5 3 26 26 H 1.09006 * 110.84230 * 100.94085 * 11 2 1 27 27 H 1.08993 * 111.02705 * 337.40327 * 11 2 1 28 28 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 29 29 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 30 30 H 1.08999 * 109.46829 * 59.99957 * 14 13 12 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.46923 * 299.99789 * 14 13 12 33 33 H 1.08995 * 109.46917 * 304.99723 * 15 13 12 34 34 H 1.08997 * 109.47249 * 65.00210 * 15 13 12 35 35 H 1.08004 * 122.54680 * 359.97438 * 17 16 15 36 36 H 1.08002 * 125.20333 * 179.97438 * 18 17 16 37 37 H 1.08001 * 125.19808 * 0.03061 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0429 1.4170 0.0000 4 1 2.6788 1.7611 -0.8023 5 6 1.7003 2.2742 1.0242 6 7 0.9263 1.8550 2.0013 7 14 2.3356 4.0308 1.0238 8 1 1.8640 4.7275 -0.1998 9 1 1.8278 4.7410 2.2251 10 1 3.8205 4.0202 1.0463 11 6 2.0537 -0.7466 -1.2457 12 6 3.2729 -1.5222 -0.6767 13 6 2.7757 -1.8445 0.7549 14 6 1.8854 -3.0887 0.7405 15 6 3.9644 -2.0516 1.6959 16 6 3.4637 -2.4834 3.0501 17 6 3.2839 -3.8137 3.3879 18 6 2.8349 -4.0234 4.6265 19 16 2.6153 -2.4812 5.4431 20 6 3.1657 -1.6130 4.0159 21 8 2.0158 -0.6927 1.1558 22 1 -0.3634 -1.0275 0.0167 23 1 -0.3634 0.5283 0.8815 24 1 -0.3634 0.4993 -0.8982 25 1 0.6856 2.4580 2.7220 26 1 2.3671 -0.0426 -2.0166 27 1 1.3028 -1.4349 -1.6335 28 1 3.4571 -2.4350 -1.2434 29 1 4.1621 -0.8924 -0.6513 30 1 2.4541 -3.9380 0.3617 31 1 1.5440 -3.3030 1.7532 32 1 1.0241 -2.9117 0.0962 33 1 4.6202 -2.8211 1.2887 34 1 4.5173 -1.1175 1.7939 35 1 3.4914 -4.6208 2.7010 36 1 2.6366 -4.9920 5.0612 37 1 3.2482 -0.5393 3.9335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690004018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:59 Heat of formation + Delta-G solvation = -18.484556 kcal Electronic energy + Delta-G solvation = -19115.800590 eV Core-core repulsion = 16370.641047 eV Total energy + Delta-G solvation = -2745.159543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.16285 -37.41788 -33.47768 -31.50858 -30.90838 -29.41582 -27.74232 -26.46981 -25.06548 -23.45139 -21.94372 -19.63920 -19.00499 -18.13622 -17.02883 -16.63371 -14.92936 -14.75448 -14.45060 -14.26944 -13.28646 -12.99881 -12.75534 -12.66898 -12.38466 -12.23872 -11.86743 -11.63591 -11.48970 -11.27046 -11.10756 -10.92575 -10.82564 -10.60981 -10.44439 -10.37202 -10.26855 -9.96974 -9.62338 -9.44324 -9.00934 -8.42926 -8.30710 -7.94891 -7.71129 -5.89070 -4.05175 1.49253 2.10921 2.44301 3.18428 3.32802 3.38045 3.40341 4.45509 4.91092 5.27630 5.44764 5.50604 5.57540 5.69226 5.80387 5.83634 5.89499 6.08888 6.13237 6.18654 6.24152 6.42379 6.48586 6.51942 6.60259 6.70981 6.76046 6.87161 6.98505 6.99849 7.00625 7.11568 7.21290 7.46590 7.83056 8.17264 8.45176 8.73599 9.14577 9.65382 11.11870 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.007683 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.640829 B = 3643.716257 C = 4480.609833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 C -0.530 4.530 4 H 0.055 0.945 5 C 0.082 3.918 6 N -0.858 5.858 7 Si 0.883 3.117 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.278 1.278 11 C -0.142 4.142 12 C -0.139 4.139 13 C 0.106 3.894 14 C -0.156 4.156 15 C -0.048 4.048 16 C -0.095 4.095 17 C -0.120 4.120 18 C -0.230 4.230 19 S 0.061 5.939 20 C -0.169 4.169 21 O -0.335 6.335 22 H 0.010 0.990 23 H 0.089 0.911 24 H 0.032 0.968 25 H 0.258 0.742 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.156 0.844 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -10.268 1.815 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.193 3.807 3 C -0.567 4.567 4 H 0.074 0.926 5 C -0.123 4.123 6 N -0.495 5.495 7 Si 0.711 3.289 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.203 1.203 11 C -0.179 4.179 12 C -0.177 4.177 13 C 0.065 3.935 14 C -0.213 4.213 15 C -0.088 4.088 16 C -0.106 4.106 17 C -0.152 4.152 18 C -0.365 4.365 19 S 0.324 5.676 20 C -0.304 4.304 21 O -0.255 6.255 22 H 0.029 0.971 23 H 0.108 0.892 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.521 -9.717 3.670 10.968 hybrid contribution 0.719 0.497 -1.614 1.835 sum 4.240 -9.221 2.056 10.355 Atomic orbital electron populations 1.22022 0.97836 0.97497 1.02454 1.19570 0.90638 0.90325 0.80159 1.21188 1.32213 0.94819 1.08518 0.92650 1.24964 0.94279 0.97752 0.95263 1.69958 1.34271 1.34902 1.10369 0.86835 0.79372 0.85373 0.77351 1.20333 1.21323 1.20326 1.23187 0.96153 0.98313 1.00286 1.23150 0.99220 0.99205 0.96144 1.21967 0.90707 0.89071 0.91757 1.22250 0.99911 0.97182 1.02004 1.20426 0.96800 1.01208 0.90408 1.18794 1.03037 0.91988 0.96793 1.20076 1.02288 0.96787 0.96012 1.25387 1.11015 1.00818 0.99266 1.84089 1.67102 0.98333 1.18064 1.25536 1.05918 1.03779 0.95157 1.88803 1.68956 1.36014 1.31701 0.97102 0.89189 0.94874 0.93199 0.91665 0.93261 0.92449 0.91127 0.93563 0.92159 0.92890 0.91357 0.90447 0.84951 0.82675 0.81468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.53 37.16 0.32 -3.14 16 2 C 0.23 5.67 0.82 -91.05 -0.07 5.60 16 3 C -0.53 -14.34 8.23 -34.44 -0.28 -14.63 16 4 H 0.06 1.49 7.48 -52.49 -0.39 1.09 16 5 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 6 N -0.86 -24.29 10.92 55.43 0.61 -23.68 16 7 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C -0.14 -2.93 5.69 -24.78 -0.14 -3.07 16 12 C -0.14 -2.56 6.05 -24.48 -0.15 -2.71 16 13 C 0.11 2.05 0.86 -89.59 -0.08 1.98 16 14 C -0.16 -2.73 8.19 37.16 0.30 -2.43 16 15 C -0.05 -0.84 4.85 -27.88 -0.14 -0.97 16 16 C -0.10 -1.63 4.11 -106.25 -0.44 -2.07 16 17 C -0.12 -1.78 8.29 -41.21 -0.34 -2.12 16 18 C -0.23 -3.20 11.23 29.04 0.33 -2.88 16 19 S 0.06 0.94 23.34 -107.50 -2.51 -1.57 16 20 C -0.17 -3.07 10.97 29.04 0.32 -2.75 16 21 O -0.34 -8.21 9.43 -35.23 -0.33 -8.54 16 22 H 0.01 0.23 7.92 -51.93 -0.41 -0.18 16 23 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.06 1.34 7.61 -51.93 -0.39 0.94 16 27 H 0.05 0.95 7.55 -51.93 -0.39 0.56 16 28 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 29 H 0.07 1.31 8.05 -51.93 -0.42 0.90 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.10 6.11 -51.93 -0.32 0.78 16 32 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 33 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 35 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 36 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.17 3.33 8.06 -52.49 -0.42 2.91 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -28.68 308.72 -8.60 -37.28 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.53 Total: 2.81 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -0.47 Total: -27.03 kcal Atomic # 7 Polarization: -24.29 SS G_CDS: 0.61 Total: -23.68 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.33 Total: -8.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.51 Total: -1.57 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.68 -8.60 -37.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.792 kcal (2) G-P(sol) polarization free energy of solvation -28.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds