Wall clock time and date at job start Mon Mar 30 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50696 * 109.90077 * 2 1 4 4 H 1.07999 * 120.00001 * 239.06878 * 3 2 1 5 5 C 1.37880 * 119.99976 * 59.06054 * 3 2 1 6 6 N 1.31517 * 119.99870 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 120.00118 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47279 * 60.00223 * 7 5 3 9 9 H 1.48497 * 109.47163 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46987 * 300.00473 * 7 5 3 11 11 C 1.54384 * 109.82953 * 239.06217 * 2 1 3 12 12 C 1.55304 * 102.25492 * 219.12964 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 C 1.53002 * 110.31095 * 82.49036 * 13 12 11 15 15 C 1.53005 * 110.30859 * 204.65983 * 13 12 11 16 16 C 1.50700 * 109.46962 * 184.99858 * 15 13 12 17 17 C 1.38423 * 122.53703 * 90.00181 * 16 15 13 18 18 C 1.33397 * 114.92287 * 179.97438 * 17 16 15 19 19 S 1.75879 * 109.58923 * 359.97438 * 18 17 16 20 20 C 1.33390 * 122.54341 * 269.70689 * 16 15 13 21 21 O 1.43240 * 109.82863 * 120.93524 * 2 1 3 22 22 H 1.09001 * 109.47612 * 180.93102 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.93530 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.93160 * 1 2 3 25 25 H 0.97003 * 119.99471 * 179.97438 * 6 5 3 26 26 H 1.09006 * 110.84230 * 100.94085 * 11 2 1 27 27 H 1.08993 * 111.02705 * 337.40327 * 11 2 1 28 28 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 29 29 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 30 30 H 1.08999 * 109.46829 * 59.99957 * 14 13 12 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.46923 * 299.99789 * 14 13 12 33 33 H 1.08995 * 109.46917 * 304.99723 * 15 13 12 34 34 H 1.08997 * 109.47249 * 65.00210 * 15 13 12 35 35 H 1.08004 * 122.54680 * 359.97438 * 17 16 15 36 36 H 1.08002 * 125.20333 * 179.97438 * 18 17 16 37 37 H 1.08001 * 125.19808 * 0.03061 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0429 1.4170 0.0000 4 1 2.6788 1.7611 -0.8023 5 6 1.7003 2.2742 1.0242 6 7 0.9263 1.8550 2.0013 7 14 2.3356 4.0308 1.0238 8 1 1.8640 4.7275 -0.1998 9 1 1.8278 4.7410 2.2251 10 1 3.8205 4.0202 1.0463 11 6 2.0537 -0.7466 -1.2457 12 6 3.2729 -1.5222 -0.6767 13 6 2.7757 -1.8445 0.7549 14 6 1.8854 -3.0887 0.7405 15 6 3.9644 -2.0516 1.6959 16 6 3.4637 -2.4834 3.0501 17 6 3.2839 -3.8137 3.3879 18 6 2.8349 -4.0234 4.6265 19 16 2.6153 -2.4812 5.4431 20 6 3.1657 -1.6130 4.0159 21 8 2.0158 -0.6927 1.1558 22 1 -0.3634 -1.0275 0.0167 23 1 -0.3634 0.5283 0.8815 24 1 -0.3634 0.4993 -0.8982 25 1 0.6856 2.4580 2.7220 26 1 2.3671 -0.0426 -2.0166 27 1 1.3028 -1.4349 -1.6335 28 1 3.4571 -2.4350 -1.2434 29 1 4.1621 -0.8924 -0.6513 30 1 2.4541 -3.9380 0.3617 31 1 1.5440 -3.3030 1.7532 32 1 1.0241 -2.9117 0.0962 33 1 4.6202 -2.8211 1.2887 34 1 4.5173 -1.1175 1.7939 35 1 3.4914 -4.6208 2.7010 36 1 2.6366 -4.9920 5.0612 37 1 3.2482 -0.5393 3.9335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690004018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:59 Heat of formation + Delta-G solvation = -33.517052 kcal Electronic energy + Delta-G solvation = -19116.452448 eV Core-core repulsion = 16370.641047 eV Total energy + Delta-G solvation = -2745.811401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.70862 -38.79301 -35.28955 -33.25432 -32.61566 -30.80910 -29.36661 -27.85144 -27.10377 -24.91304 -23.34094 -21.41036 -20.53984 -19.42931 -18.61247 -18.21649 -16.67944 -16.25502 -15.99667 -15.93817 -14.90401 -14.64330 -14.32152 -14.13699 -13.77407 -13.61010 -13.38591 -13.21261 -12.99991 -12.85505 -12.79607 -12.68474 -12.51848 -12.26844 -12.09572 -11.96913 -11.91200 -11.61451 -11.16189 -11.10526 -10.80661 -10.51004 -9.65279 -9.52245 -9.10435 -7.96415 -6.18612 0.26426 0.89372 1.22262 1.40121 1.40760 1.47521 1.95082 2.44511 3.15215 3.58520 4.02704 4.12028 4.18714 4.32138 4.35125 4.48120 4.63854 4.70489 4.72893 4.79838 4.91038 4.92978 4.98928 5.05786 5.11858 5.15805 5.21285 5.26793 5.31590 5.43477 5.56769 5.62030 5.71131 5.73319 5.82777 6.16920 6.42821 6.76317 7.30123 7.57686 9.02395 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.007683 C = 0.006248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.640829 B = 3643.716257 C = 4480.609833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.219 3.781 3 C -0.546 4.546 4 H 0.050 0.950 5 C 0.036 3.964 6 N -0.884 5.884 7 Si 0.939 3.061 8 H -0.270 1.270 9 H -0.288 1.288 10 H -0.276 1.276 11 C -0.138 4.138 12 C -0.131 4.131 13 C 0.094 3.906 14 C -0.147 4.147 15 C -0.047 4.047 16 C -0.091 4.091 17 C -0.129 4.129 18 C -0.211 4.211 19 S 0.065 5.935 20 C -0.214 4.214 21 O -0.368 6.368 22 H 0.024 0.976 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.254 0.746 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.164 0.836 36 H 0.193 0.807 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -12.831 1.067 13.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.181 3.819 3 C -0.584 4.584 4 H 0.068 0.932 5 C -0.166 4.166 6 N -0.522 5.522 7 Si 0.765 3.235 8 H -0.195 1.195 9 H -0.213 1.213 10 H -0.202 1.202 11 C -0.176 4.176 12 C -0.168 4.168 13 C 0.054 3.946 14 C -0.205 4.205 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.160 4.160 18 C -0.346 4.346 19 S 0.328 5.672 20 C -0.349 4.349 21 O -0.288 6.288 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.182 0.818 36 H 0.210 0.790 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.375 -12.280 2.913 13.357 hybrid contribution 0.453 1.245 -1.366 1.903 sum 4.828 -11.035 1.548 12.144 Atomic orbital electron populations 1.21916 0.98543 0.97769 1.00918 1.19586 0.90295 0.89945 0.82107 1.21571 1.31838 0.96765 1.08184 0.93187 1.25629 0.94636 1.01177 0.95142 1.70112 1.35475 1.35783 1.10825 0.85944 0.78728 0.81427 0.77396 1.19535 1.21334 1.20160 1.23094 0.97543 0.98481 0.98500 1.23133 0.97659 1.00352 0.95674 1.22314 0.91243 0.88363 0.92703 1.22162 0.99554 0.97337 1.01426 1.20437 0.96366 1.01249 0.90615 1.19000 1.02013 0.93127 0.96189 1.20265 1.02639 0.96113 0.96958 1.25857 1.08837 1.01183 0.98685 1.84009 1.66885 0.99340 1.17010 1.25401 1.09073 1.02754 0.97711 1.88742 1.69842 1.38080 1.32139 0.95726 0.92456 0.94625 0.93698 0.92028 0.91663 0.88535 0.91965 0.89697 0.93147 0.93998 0.87669 0.92977 0.81817 0.79023 0.84990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 8.53 71.98 0.61 -6.07 16 2 C 0.22 10.83 0.82 -11.07 -0.01 10.83 16 3 C -0.55 -30.16 8.23 25.60 0.21 -29.94 16 4 H 0.05 2.73 7.48 -2.91 -0.02 2.70 16 5 C 0.04 2.04 5.26 84.65 0.45 2.48 16 6 N -0.88 -52.03 10.92 21.45 0.23 -51.80 16 7 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 8 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 C -0.14 -5.54 5.69 31.86 0.18 -5.36 16 12 C -0.13 -4.48 6.05 32.05 0.19 -4.29 16 13 C 0.09 3.49 0.86 -10.13 -0.01 3.48 16 14 C -0.15 -4.70 8.19 71.98 0.59 -4.11 16 15 C -0.05 -1.56 4.85 29.85 0.14 -1.41 16 16 C -0.09 -3.04 4.11 -20.92 -0.09 -3.12 16 17 C -0.13 -3.39 8.29 21.22 0.18 -3.22 16 18 C -0.21 -5.18 11.23 66.72 0.75 -4.43 16 19 S 0.06 1.95 23.34 -56.49 -1.32 0.63 16 20 C -0.21 -8.04 10.97 66.72 0.73 -7.31 16 21 O -0.37 -18.27 9.43 -148.98 -1.40 -19.67 16 22 H 0.02 1.10 7.92 -2.39 -0.02 1.08 16 23 H 0.06 3.23 6.01 -2.38 -0.01 3.22 16 24 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.06 2.47 7.61 -2.38 -0.02 2.45 16 27 H 0.06 2.37 7.55 -2.39 -0.02 2.35 16 28 H 0.10 2.56 8.03 -2.39 -0.02 2.54 16 29 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.70 6.11 -2.39 -0.01 1.69 16 32 H 0.04 1.41 7.32 -2.39 -0.02 1.40 16 33 H 0.11 2.67 8.13 -2.39 -0.02 2.65 16 34 H 0.05 1.97 8.12 -2.39 -0.02 1.95 16 35 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.13 5.79 8.06 -2.91 -0.02 5.76 16 Total: -1.00 -64.14 308.72 4.51 -59.63 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 1.04 Total: 17.27 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 3.93 Total: -52.48 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.23 Total: -51.80 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.40 Total: -19.67 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.32 Total: 0.63 kcal Total: -64.14 4.51 -59.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.116 kcal (2) G-P(sol) polarization free energy of solvation -64.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds