Wall clock time and date at job start Mon Mar 30 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.82464 * 2 1 4 4 H 1.08001 * 120.00549 * 120.56457 * 3 2 1 5 5 C 1.37879 * 119.99910 * 300.56934 * 3 2 1 6 6 N 1.31518 * 119.99963 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00051 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47286 * 59.99656 * 7 5 3 9 9 H 1.48507 * 109.46877 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47257 * 299.99476 * 7 5 3 11 11 C 1.54378 * 109.83495 * 120.97827 * 2 1 3 12 12 C 1.55300 * 102.25812 * 140.86895 * 11 2 1 13 13 C 1.54952 * 100.93948 * 325.86973 * 12 11 2 14 14 C 1.52997 * 110.30979 * 277.52505 * 13 12 11 15 15 C 1.53003 * 110.39159 * 155.39970 * 13 12 11 16 16 C 1.50695 * 109.46889 * 181.44774 * 15 13 12 17 17 C 1.38433 * 122.53746 * 269.73357 * 16 15 13 18 18 C 1.33389 * 114.91699 * 179.76342 * 17 16 15 19 19 S 1.75884 * 109.59661 * 0.47999 * 18 17 16 20 20 C 1.33392 * 122.54312 * 90.02990 * 16 15 13 21 21 O 1.43233 * 109.83200 * 239.11365 * 2 1 3 22 22 H 1.09003 * 109.46980 * 179.43776 * 1 2 3 23 23 H 1.09001 * 109.47195 * 299.43017 * 1 2 3 24 24 H 1.09000 * 109.47107 * 59.43722 * 1 2 3 25 25 H 0.96994 * 120.00127 * 180.02562 * 6 5 3 26 26 H 1.09003 * 110.85242 * 259.06796 * 11 2 1 27 27 H 1.09009 * 110.84321 * 22.47499 * 11 2 1 28 28 H 1.08993 * 111.12904 * 207.95291 * 12 11 2 29 29 H 1.09001 * 111.12412 * 83.78380 * 12 11 2 30 30 H 1.09002 * 109.47153 * 177.16637 * 14 13 12 31 31 H 1.09001 * 109.46832 * 57.16828 * 14 13 12 32 32 H 1.09004 * 109.47261 * 297.16809 * 14 13 12 33 33 H 1.09002 * 109.47150 * 301.44887 * 15 13 12 34 34 H 1.09001 * 109.46932 * 61.44948 * 15 13 12 35 35 H 1.07999 * 122.53803 * 0.02562 * 17 16 15 36 36 H 1.07998 * 125.20073 * 180.20901 * 18 17 16 37 37 H 1.07996 * 125.19913 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6716 1.7645 0.8053 5 6 1.7036 2.2722 -1.0281 6 7 0.9360 1.8498 -2.0090 7 14 2.3376 4.0292 -1.0285 8 1 3.8225 4.0197 -1.0428 9 1 1.8350 4.7366 -2.2337 10 1 1.8588 4.7286 0.1908 11 6 2.0538 -0.7475 1.2451 12 6 3.2730 -1.5227 0.6756 13 6 2.7747 -1.8438 -0.7561 14 6 1.8839 -3.0877 -0.7417 15 6 3.9612 -2.0522 -1.6993 16 6 3.4538 -2.3278 -3.0913 17 6 3.1920 -3.6079 -3.5486 18 6 2.7439 -3.6759 -4.8031 19 16 2.6456 -2.0567 -5.4829 20 6 3.2284 -1.3572 -3.9781 21 8 2.0159 -0.6917 -1.1563 22 1 -0.3633 -1.0277 -0.0101 23 1 -0.3633 0.5050 0.8950 24 1 -0.3633 0.5226 -0.8849 25 1 0.6989 2.4508 -2.7325 26 1 2.3672 -0.0441 2.0166 27 1 1.2999 -1.4336 1.6313 28 1 3.4572 -2.4358 1.2414 29 1 4.1621 -0.8925 0.6499 30 1 1.5008 -3.2718 -1.7454 31 1 1.0500 -2.9295 -0.0578 32 1 2.4664 -3.9479 -0.4117 33 1 4.5797 -1.1547 -1.7090 34 1 4.5549 -2.8989 -1.3548 35 1 3.3356 -4.4847 -2.9346 36 1 2.4854 -4.5863 -5.3234 37 1 3.3809 -0.3030 -3.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690004020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:01 Heat of formation + Delta-G solvation = -18.562986 kcal Electronic energy + Delta-G solvation = -19161.182385 eV Core-core repulsion = 16416.019441 eV Total energy + Delta-G solvation = -2745.162944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.13881 -37.37327 -33.47991 -31.50137 -30.90755 -29.39309 -27.74943 -26.43592 -25.05954 -23.42780 -21.92352 -19.64349 -18.99442 -18.10447 -17.00293 -16.62403 -14.89134 -14.75285 -14.45664 -14.24635 -13.26848 -12.93987 -12.75769 -12.64403 -12.35736 -12.21794 -11.85946 -11.62397 -11.51710 -11.27574 -11.11783 -10.88637 -10.82446 -10.61506 -10.42623 -10.35990 -10.25677 -9.96887 -9.62065 -9.43736 -9.00794 -8.42754 -8.25651 -7.91733 -7.69247 -5.88695 -4.04732 1.54229 2.15692 2.49182 3.23102 3.32733 3.38011 3.40351 4.45640 4.92263 5.30892 5.45536 5.51247 5.58104 5.71461 5.80625 5.84530 5.91775 6.09594 6.15499 6.20032 6.24431 6.43852 6.48864 6.53539 6.60020 6.71605 6.76950 6.87719 6.99949 7.00419 7.02982 7.13206 7.21363 7.46793 7.83401 8.16933 8.45334 8.73832 9.15172 9.65717 11.12276 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.008131 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.256470 B = 3442.798085 C = 4351.778305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.230 3.770 3 C -0.530 4.530 4 H 0.055 0.945 5 C 0.083 3.917 6 N -0.858 5.858 7 Si 0.882 3.118 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.278 1.278 11 C -0.142 4.142 12 C -0.139 4.139 13 C 0.105 3.895 14 C -0.156 4.156 15 C -0.047 4.047 16 C -0.096 4.096 17 C -0.120 4.120 18 C -0.231 4.231 19 S 0.062 5.938 20 C -0.163 4.163 21 O -0.333 6.333 22 H 0.010 0.990 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.258 0.742 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -9.890 -1.906 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.193 3.807 3 C -0.568 4.568 4 H 0.073 0.927 5 C -0.122 4.122 6 N -0.494 5.494 7 Si 0.710 3.290 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.203 1.203 11 C -0.180 4.180 12 C -0.177 4.177 13 C 0.064 3.936 14 C -0.214 4.214 15 C -0.087 4.087 16 C -0.107 4.107 17 C -0.152 4.152 18 C -0.366 4.366 19 S 0.324 5.676 20 C -0.298 4.298 21 O -0.252 6.252 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.107 0.893 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.551 -9.179 -3.724 10.523 hybrid contribution 0.645 0.363 1.583 1.747 sum 4.197 -8.816 -2.142 9.996 Atomic orbital electron populations 1.22017 0.97869 0.97431 1.02447 1.19569 0.90621 0.90353 0.80194 1.21185 1.32580 0.94830 1.08182 0.92671 1.24958 0.94291 0.97689 0.95286 1.69960 1.34496 1.34895 1.10054 0.86850 0.79376 0.85452 0.77346 1.20328 1.21326 1.20347 1.23188 0.96139 0.98330 1.00294 1.23147 0.99192 0.99191 0.96159 1.21962 0.90750 0.89109 0.91745 1.22237 0.99910 0.97173 1.02048 1.20414 0.96834 1.01453 0.90044 1.18748 1.03293 0.91791 0.96884 1.20058 1.02118 0.97735 0.95259 1.25368 1.11236 1.00133 0.99839 1.84081 1.66969 0.99411 1.17105 1.25502 1.05738 1.03621 0.94943 1.88806 1.68940 1.35929 1.31562 0.97125 0.94872 0.89258 0.93207 0.91679 0.93257 0.92448 0.91123 0.92188 0.92915 0.93549 0.90652 0.91413 0.85033 0.82742 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.52 37.16 0.32 -3.13 16 2 C 0.23 5.65 0.82 -91.05 -0.07 5.58 16 3 C -0.53 -14.33 8.23 -34.44 -0.28 -14.62 16 4 H 0.06 1.48 7.48 -52.49 -0.39 1.09 16 5 C 0.08 2.26 5.26 -17.82 -0.09 2.17 16 6 N -0.86 -24.21 10.93 55.43 0.61 -23.60 16 7 Si 0.88 21.08 29.54 -169.99 -5.02 16.05 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C -0.14 -2.93 5.69 -24.79 -0.14 -3.07 16 12 C -0.14 -2.55 6.05 -24.48 -0.15 -2.70 16 13 C 0.11 2.04 0.85 -89.59 -0.08 1.96 16 14 C -0.16 -2.72 8.32 37.16 0.31 -2.41 16 15 C -0.05 -0.82 4.82 -27.88 -0.13 -0.95 16 16 C -0.10 -1.68 4.22 -106.25 -0.45 -2.12 16 17 C -0.12 -1.82 8.41 -41.20 -0.35 -2.17 16 18 C -0.23 -3.31 11.23 29.04 0.33 -2.98 16 19 S 0.06 0.97 23.34 -107.50 -2.51 -1.53 16 20 C -0.16 -3.03 10.76 29.04 0.31 -2.72 16 21 O -0.33 -8.12 9.08 -35.23 -0.32 -8.44 16 22 H 0.01 0.22 8.03 -51.93 -0.42 -0.19 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.06 1.33 7.61 -51.93 -0.40 0.94 16 27 H 0.05 0.95 7.49 -51.92 -0.39 0.56 16 28 H 0.06 0.89 8.03 -51.93 -0.42 0.48 16 29 H 0.07 1.31 8.06 -51.93 -0.42 0.90 16 30 H 0.06 1.09 6.36 -51.93 -0.33 0.76 16 31 H 0.05 0.95 7.34 -51.93 -0.38 0.57 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 34 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.17 3.40 8.06 -52.49 -0.42 2.98 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -28.63 308.84 -8.62 -37.25 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.55 Total: 2.79 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -0.48 Total: -27.17 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.61 Total: -23.60 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.32 Total: -8.44 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.63 -8.62 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.682 kcal (2) G-P(sol) polarization free energy of solvation -28.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds