Wall clock time and date at job start Mon Mar 30 2020 06:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.82464 * 2 1 4 4 H 1.08001 * 120.00549 * 120.56457 * 3 2 1 5 5 C 1.37879 * 119.99910 * 300.56934 * 3 2 1 6 6 N 1.31518 * 119.99963 * 359.97438 * 5 3 2 7 7 Si 1.86798 * 120.00051 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47286 * 59.99656 * 7 5 3 9 9 H 1.48507 * 109.46877 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47257 * 299.99476 * 7 5 3 11 11 C 1.54378 * 109.83495 * 120.97827 * 2 1 3 12 12 C 1.55300 * 102.25812 * 140.86895 * 11 2 1 13 13 C 1.54952 * 100.93948 * 325.86973 * 12 11 2 14 14 C 1.52997 * 110.30979 * 277.52505 * 13 12 11 15 15 C 1.53003 * 110.39159 * 155.39970 * 13 12 11 16 16 C 1.50695 * 109.46889 * 181.44774 * 15 13 12 17 17 C 1.38433 * 122.53746 * 269.73357 * 16 15 13 18 18 C 1.33389 * 114.91699 * 179.76342 * 17 16 15 19 19 S 1.75884 * 109.59661 * 0.47999 * 18 17 16 20 20 C 1.33392 * 122.54312 * 90.02990 * 16 15 13 21 21 O 1.43233 * 109.83200 * 239.11365 * 2 1 3 22 22 H 1.09003 * 109.46980 * 179.43776 * 1 2 3 23 23 H 1.09001 * 109.47195 * 299.43017 * 1 2 3 24 24 H 1.09000 * 109.47107 * 59.43722 * 1 2 3 25 25 H 0.96994 * 120.00127 * 180.02562 * 6 5 3 26 26 H 1.09003 * 110.85242 * 259.06796 * 11 2 1 27 27 H 1.09009 * 110.84321 * 22.47499 * 11 2 1 28 28 H 1.08993 * 111.12904 * 207.95291 * 12 11 2 29 29 H 1.09001 * 111.12412 * 83.78380 * 12 11 2 30 30 H 1.09002 * 109.47153 * 177.16637 * 14 13 12 31 31 H 1.09001 * 109.46832 * 57.16828 * 14 13 12 32 32 H 1.09004 * 109.47261 * 297.16809 * 14 13 12 33 33 H 1.09002 * 109.47150 * 301.44887 * 15 13 12 34 34 H 1.09001 * 109.46932 * 61.44948 * 15 13 12 35 35 H 1.07999 * 122.53803 * 0.02562 * 17 16 15 36 36 H 1.07998 * 125.20073 * 180.20901 * 18 17 16 37 37 H 1.07996 * 125.19913 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6716 1.7645 0.8053 5 6 1.7036 2.2722 -1.0281 6 7 0.9360 1.8498 -2.0090 7 14 2.3376 4.0292 -1.0285 8 1 3.8225 4.0197 -1.0428 9 1 1.8350 4.7366 -2.2337 10 1 1.8588 4.7286 0.1908 11 6 2.0538 -0.7475 1.2451 12 6 3.2730 -1.5227 0.6756 13 6 2.7747 -1.8438 -0.7561 14 6 1.8839 -3.0877 -0.7417 15 6 3.9612 -2.0522 -1.6993 16 6 3.4538 -2.3278 -3.0913 17 6 3.1920 -3.6079 -3.5486 18 6 2.7439 -3.6759 -4.8031 19 16 2.6456 -2.0567 -5.4829 20 6 3.2284 -1.3572 -3.9781 21 8 2.0159 -0.6917 -1.1563 22 1 -0.3633 -1.0277 -0.0101 23 1 -0.3633 0.5050 0.8950 24 1 -0.3633 0.5226 -0.8849 25 1 0.6989 2.4508 -2.7325 26 1 2.3672 -0.0441 2.0166 27 1 1.2999 -1.4336 1.6313 28 1 3.4572 -2.4358 1.2414 29 1 4.1621 -0.8925 0.6499 30 1 1.5008 -3.2718 -1.7454 31 1 1.0500 -2.9295 -0.0578 32 1 2.4664 -3.9479 -0.4117 33 1 4.5797 -1.1547 -1.7090 34 1 4.5549 -2.8989 -1.3548 35 1 3.3356 -4.4847 -2.9346 36 1 2.4854 -4.5863 -5.3234 37 1 3.3809 -0.3030 -3.7995 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690004020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:01 Heat of formation + Delta-G solvation = -33.458632 kcal Electronic energy + Delta-G solvation = -19161.828309 eV Core-core repulsion = 16416.019441 eV Total energy + Delta-G solvation = -2745.808867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69116 -38.75894 -35.29039 -33.25130 -32.60976 -30.79980 -29.37430 -27.82301 -27.09393 -24.90364 -23.32948 -21.40838 -20.53485 -19.41963 -18.61246 -18.20581 -16.67226 -16.22505 -16.01432 -15.92615 -14.88525 -14.60976 -14.29146 -14.14908 -13.76879 -13.58704 -13.37022 -13.20879 -13.01853 -12.86946 -12.81357 -12.69680 -12.49948 -12.25960 -12.09796 -11.94898 -11.90511 -11.59909 -11.16398 -11.09825 -10.80264 -10.50604 -9.63733 -9.50289 -9.09222 -7.95872 -6.17831 0.28431 0.91144 1.23923 1.39887 1.40531 1.47150 1.97073 2.44599 3.16110 3.59339 4.03019 4.13011 4.19788 4.32453 4.36387 4.47898 4.64397 4.72489 4.73463 4.80309 4.92771 4.93284 4.99565 5.05483 5.12260 5.16147 5.21554 5.27280 5.32202 5.43638 5.57493 5.62147 5.72323 5.74797 5.84196 6.16928 6.43271 6.76708 7.31132 7.58390 9.02894 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018257 B = 0.008131 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.256470 B = 3442.798085 C = 4351.778305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 C -0.546 4.546 4 H 0.049 0.951 5 C 0.038 3.962 6 N -0.883 5.883 7 Si 0.937 3.063 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.271 1.271 11 C -0.139 4.139 12 C -0.130 4.130 13 C 0.093 3.907 14 C -0.148 4.148 15 C -0.046 4.046 16 C -0.092 4.092 17 C -0.129 4.129 18 C -0.212 4.212 19 S 0.061 5.939 20 C -0.208 4.208 21 O -0.364 6.364 22 H 0.024 0.976 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.253 0.747 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.105 0.895 35 H 0.164 0.836 36 H 0.192 0.808 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.892 -12.449 -1.257 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.181 3.819 3 C -0.584 4.584 4 H 0.067 0.933 5 C -0.165 4.165 6 N -0.520 5.520 7 Si 0.763 3.237 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.196 1.196 11 C -0.176 4.176 12 C -0.168 4.168 13 C 0.053 3.947 14 C -0.205 4.205 15 C -0.086 4.086 16 C -0.104 4.104 17 C -0.160 4.160 18 C -0.347 4.347 19 S 0.324 5.676 20 C -0.343 4.343 21 O -0.284 6.284 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.181 0.819 36 H 0.209 0.791 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.309 -11.737 -3.066 12.873 hybrid contribution 0.410 1.112 1.369 1.811 sum 4.719 -10.625 -1.698 11.749 Atomic orbital electron populations 1.21910 0.98576 0.97729 1.00876 1.19580 0.90270 0.89949 0.82149 1.21565 1.32210 0.96799 1.07842 0.93258 1.25604 0.94641 1.01038 0.95167 1.70110 1.35675 1.35742 1.10479 0.85972 0.78745 0.81587 0.77358 1.20169 1.21357 1.19600 1.23096 0.97524 0.98488 0.98517 1.23127 0.97620 1.00317 0.95722 1.22311 0.91298 0.88444 0.92660 1.22153 0.99645 0.97356 1.01381 1.20440 0.96201 1.01985 0.89979 1.18982 1.02201 0.92674 0.96538 1.20262 1.02332 0.97444 0.95932 1.25836 1.09203 1.00091 0.99574 1.84006 1.66807 1.00892 1.15879 1.25359 1.08938 1.02606 0.97438 1.88748 1.69803 1.37965 1.31930 0.95716 0.94664 0.92529 0.93727 0.92082 0.91662 0.88571 0.92003 0.93209 0.93893 0.89682 0.92884 0.87652 0.81863 0.79116 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 8.52 71.98 0.61 -6.02 16 2 C 0.22 10.79 0.82 -11.07 -0.01 10.78 16 3 C -0.55 -30.14 8.23 25.60 0.21 -29.93 16 4 H 0.05 2.69 7.48 -2.91 -0.02 2.67 16 5 C 0.04 2.12 5.26 84.65 0.45 2.56 16 6 N -0.88 -51.78 10.93 21.45 0.23 -51.54 16 7 Si 0.94 44.37 29.54 68.60 2.03 46.39 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 C -0.14 -5.53 5.69 31.85 0.18 -5.35 16 12 C -0.13 -4.46 6.05 32.05 0.19 -4.27 16 13 C 0.09 3.44 0.85 -10.13 -0.01 3.43 16 14 C -0.15 -4.68 8.32 71.98 0.60 -4.08 16 15 C -0.05 -1.53 4.82 29.85 0.14 -1.38 16 16 C -0.09 -3.11 4.22 -20.92 -0.09 -3.20 16 17 C -0.13 -3.49 8.41 21.22 0.18 -3.31 16 18 C -0.21 -5.42 11.23 66.72 0.75 -4.67 16 19 S 0.06 1.91 23.34 -56.49 -1.32 0.60 16 20 C -0.21 -7.99 10.76 66.72 0.72 -7.27 16 21 O -0.36 -17.96 9.08 -148.98 -1.35 -19.31 16 22 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 23 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 3.18 6.04 -2.39 -0.01 3.17 16 25 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.06 2.44 7.61 -2.39 -0.02 2.43 16 27 H 0.06 2.36 7.49 -2.38 -0.02 2.35 16 28 H 0.10 2.55 8.03 -2.39 -0.02 2.53 16 29 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 30 H 0.05 1.67 6.36 -2.39 -0.02 1.65 16 31 H 0.04 1.43 7.34 -2.39 -0.02 1.41 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 34 H 0.11 2.65 8.13 -2.39 -0.02 2.63 16 35 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.13 5.86 8.06 -2.91 -0.02 5.84 16 Total: -1.00 -63.91 308.84 4.56 -59.36 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 1.04 Total: 17.23 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 3.93 Total: -52.71 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.23 Total: -51.54 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.35 Total: -19.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.32 Total: 0.60 kcal Total: -63.91 4.56 -59.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690004020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.898 kcal (2) G-P(sol) polarization free energy of solvation -63.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds