Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47982 * 2 1 4 4 C 1.50694 * 109.47168 * 303.01719 * 3 2 1 5 5 C 1.38417 * 122.54138 * 274.39750 * 4 3 2 6 6 C 1.33393 * 114.92097 * 179.76352 * 5 4 3 7 7 S 1.75885 * 109.59278 * 0.47704 * 6 5 4 8 8 C 1.33390 * 122.53622 * 94.68589 * 4 3 2 9 9 C 1.53097 * 109.48373 * 120.02621 * 2 1 3 10 10 C 1.53178 * 109.16115 * 177.59799 * 9 2 1 11 11 C 1.53180 * 109.03740 * 303.02267 * 10 9 2 12 12 C 1.53097 * 109.16293 * 56.97846 * 11 10 9 13 13 H 1.08996 * 109.48687 * 62.38486 * 12 11 10 14 14 C 1.50698 * 109.47673 * 182.40968 * 12 11 10 15 15 H 1.08004 * 120.00244 * 95.00212 * 14 12 11 16 16 C 1.37874 * 120.00266 * 275.00087 * 14 12 11 17 17 N 1.31512 * 120.00174 * 185.11893 * 16 14 12 18 18 Si 1.86798 * 119.99780 * 5.11613 * 16 14 12 19 19 H 1.48499 * 109.46784 * 84.89893 * 18 16 14 20 20 H 1.48495 * 109.47377 * 324.89649 * 18 16 14 21 21 H 1.48501 * 109.47255 * 204.89542 * 18 16 14 22 22 O 1.42895 * 109.48391 * 239.97328 * 2 1 3 23 23 H 1.08998 * 109.47516 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47667 * 300.02917 * 1 2 3 25 25 H 1.09011 * 109.46444 * 60.02423 * 1 2 3 26 26 H 1.09004 * 109.46907 * 63.02370 * 3 2 1 27 27 H 1.08999 * 109.47014 * 183.01651 * 3 2 1 28 28 H 1.08000 * 122.54167 * 359.97438 * 5 4 3 29 29 H 1.08004 * 125.20401 * 180.21143 * 6 5 4 30 30 H 1.08001 * 125.20849 * 359.97438 * 8 4 3 31 31 H 1.08999 * 109.52340 * 297.50049 * 9 2 1 32 32 H 1.08997 * 109.52063 * 57.69672 * 9 2 1 33 33 H 1.09004 * 109.54406 * 62.88250 * 10 9 2 34 34 H 1.08991 * 109.54454 * 183.06520 * 10 9 2 35 35 H 1.09006 * 109.52216 * 297.07497 * 11 10 9 36 36 H 1.08996 * 109.52205 * 176.88362 * 11 10 9 37 37 H 0.97003 * 120.00513 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 1.4779 2.1742 -1.1913 5 6 2.0763 2.1363 -2.4389 6 6 1.4474 2.8348 -3.3854 7 16 0.0240 3.6080 -2.7002 8 6 0.3689 2.9120 -1.1221 9 6 2.0407 -0.7222 1.2496 10 6 3.5712 -0.7706 1.2122 11 6 4.0179 -1.4597 -0.0809 12 6 3.4308 -0.7090 -1.2791 13 1 3.8192 0.3093 -1.2960 14 6 3.8170 -1.4154 -2.5530 15 1 3.1426 -2.1312 -2.9994 16 6 5.0313 -1.1480 -3.1487 17 7 5.3262 -1.6871 -4.3114 18 14 6.2574 -0.0197 -2.3044 19 1 7.0643 -0.8030 -1.3346 20 1 5.5275 1.0559 -1.5865 21 1 7.1553 0.5849 -3.3210 22 8 2.0067 -0.6741 -1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5143 0.8897 25 1 -0.3632 0.5135 -0.8903 26 1 1.7219 1.9404 0.9159 27 1 3.1289 1.4427 -0.0541 28 1 2.9819 1.5804 -2.6322 29 1 1.7661 2.9169 -4.4141 30 1 -0.2266 3.0593 -0.2332 31 1 1.7150 -0.1843 2.1399 32 1 1.6446 -1.7375 1.2709 33 1 3.9690 0.2439 1.2407 34 1 3.9394 -1.3310 2.0714 35 1 3.6617 -2.4899 -0.0865 36 1 5.1061 -1.4492 -0.1421 37 1 6.1804 -1.4987 -4.7308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690008421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -23.522380 kcal Electronic energy + Delta-G solvation = -19283.808424 eV Core-core repulsion = 16538.430425 eV Total energy + Delta-G solvation = -2745.377999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.73222 -37.23423 -33.66837 -32.82361 -31.97961 -29.69810 -27.80185 -27.15633 -25.15360 -22.71896 -21.86167 -20.97008 -19.09569 -17.96019 -16.98590 -16.92407 -15.70874 -15.23160 -14.86377 -14.10680 -13.99814 -13.50921 -13.15970 -12.67660 -12.61356 -12.51910 -12.36175 -11.95716 -11.90330 -11.77018 -11.46106 -11.20712 -11.10809 -10.90834 -10.70955 -10.46264 -10.30282 -10.27598 -9.80719 -9.71686 -8.93024 -8.66872 -8.41893 -8.26623 -7.89606 -6.15506 -4.14586 1.38859 2.03008 2.32614 3.17842 3.19270 3.26278 3.28971 4.30312 4.62454 5.12428 5.14930 5.18084 5.32733 5.41394 5.51184 5.58722 5.69327 5.80556 5.87726 5.95834 5.99963 6.11374 6.17383 6.21349 6.29319 6.38954 6.44310 6.51152 6.60070 6.71428 6.76204 6.80606 6.85332 7.00160 7.32071 7.65886 8.15003 8.71989 8.98186 9.45516 10.97372 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.009088 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.049983 B = 3080.410614 C = 4074.026747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.118 3.882 3 C -0.091 4.091 4 C -0.071 4.071 5 C -0.108 4.108 6 C -0.208 4.208 7 S 0.050 5.950 8 C -0.221 4.221 9 C -0.136 4.136 10 C -0.129 4.129 11 C -0.150 4.150 12 C 0.184 3.816 13 H 0.026 0.974 14 C -0.502 4.502 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.863 3.137 19 H -0.272 1.272 20 H -0.261 1.261 21 H -0.286 1.286 22 O -0.356 6.356 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.150 0.850 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 8.843 9.190 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.077 3.923 3 C -0.131 4.131 4 C -0.083 4.083 5 C -0.138 4.138 6 C -0.343 4.343 7 S 0.312 5.688 8 C -0.356 4.356 9 C -0.174 4.174 10 C -0.166 4.166 11 C -0.188 4.188 12 C 0.127 3.873 13 H 0.044 0.956 14 C -0.540 4.540 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.530 5.530 18 Si 0.690 3.310 19 H -0.198 1.198 20 H -0.186 1.186 21 H -0.212 1.212 22 O -0.275 6.275 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.167 0.833 29 H 0.179 0.821 30 H 0.175 0.825 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.726 9.700 8.291 15.459 hybrid contribution 2.147 -0.340 1.098 2.435 sum -6.579 9.360 9.389 14.801 Atomic orbital electron populations 1.21768 0.93627 1.02157 1.01762 1.21237 0.94084 0.89501 0.87470 1.21075 1.01580 0.95783 0.94704 1.18791 0.95323 0.98089 0.96134 1.20388 1.02405 0.99154 0.91817 1.25507 0.99480 1.05724 1.03578 1.83924 1.28854 1.52368 1.03623 1.25258 1.02842 1.07044 1.00465 1.22131 0.96543 1.01197 0.97549 1.21752 0.95341 1.00564 0.98969 1.22505 1.00404 1.01066 0.94863 1.20289 0.78011 0.95051 0.93925 0.95629 1.20771 1.03065 1.24083 1.06100 0.90129 1.24803 0.97785 0.95637 0.94240 1.69875 1.23287 1.44637 1.15191 0.87133 0.82049 0.81958 0.79839 1.19793 1.18624 1.21200 1.88089 1.23641 1.75820 1.39998 0.92300 0.92361 0.91626 0.91034 0.90114 0.83256 0.82123 0.82539 0.92229 0.91296 0.92653 0.92821 0.91658 0.92546 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.31 37.16 0.31 -1.72 16 2 C 0.12 2.03 0.79 -90.57 -0.07 1.96 16 3 C -0.09 -1.48 3.88 -27.88 -0.11 -1.59 16 4 C -0.07 -1.18 4.05 -106.25 -0.43 -1.61 16 5 C -0.11 -2.01 9.33 -41.21 -0.38 -2.40 16 6 C -0.21 -3.41 11.23 29.04 0.33 -3.09 16 7 S 0.05 0.70 23.34 -107.50 -2.51 -1.81 16 8 C -0.22 -3.17 9.60 29.04 0.28 -2.89 16 9 C -0.14 -2.12 4.92 -26.59 -0.13 -2.25 16 10 C -0.13 -2.16 5.72 -26.55 -0.15 -2.31 16 11 C -0.15 -3.15 5.20 -26.59 -0.14 -3.29 16 12 C 0.18 4.30 1.39 -27.83 -0.04 4.26 16 13 H 0.03 0.61 2.56 -51.93 -0.13 0.48 16 14 C -0.50 -14.09 9.25 -34.44 -0.32 -14.41 16 15 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 16 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 18 Si 0.86 20.70 25.86 -169.99 -4.40 16.30 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.26 -5.92 6.14 56.52 0.35 -5.57 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 O -0.36 -7.93 9.20 -35.23 -0.32 -8.25 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.04 6.39 -51.92 -0.33 0.71 16 26 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 27 H 0.08 1.43 4.97 -51.93 -0.26 1.17 16 28 H 0.15 3.19 6.44 -52.49 -0.34 2.85 16 29 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 30 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.90 6.69 -51.93 -0.35 0.55 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.21 6.32 -51.93 -0.33 0.88 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 294.65 15.07 4.44 4.44 Total: -1.00 -29.54 294.65 -8.12 -37.66 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.15 Total: 4.85 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -0.96 Total: -27.24 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.77 Total: -25.95 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.32 Total: -8.25 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.40 Total: 16.30 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.81 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.54 -8.12 -37.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690008421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.140 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds