Wall clock time and date at job start Mon Mar 30 2020 06:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47982 * 2 1 4 4 C 1.50694 * 109.47168 * 303.01719 * 3 2 1 5 5 C 1.38417 * 122.54138 * 274.39750 * 4 3 2 6 6 C 1.33393 * 114.92097 * 179.76352 * 5 4 3 7 7 S 1.75885 * 109.59278 * 0.47704 * 6 5 4 8 8 C 1.33390 * 122.53622 * 94.68589 * 4 3 2 9 9 C 1.53097 * 109.48373 * 120.02621 * 2 1 3 10 10 C 1.53178 * 109.16115 * 177.59799 * 9 2 1 11 11 C 1.53180 * 109.03740 * 303.02267 * 10 9 2 12 12 C 1.53097 * 109.16293 * 56.97846 * 11 10 9 13 13 H 1.08996 * 109.48687 * 62.38486 * 12 11 10 14 14 C 1.50698 * 109.47673 * 182.40968 * 12 11 10 15 15 H 1.08004 * 120.00244 * 95.00212 * 14 12 11 16 16 C 1.37874 * 120.00266 * 275.00087 * 14 12 11 17 17 N 1.31512 * 120.00174 * 185.11893 * 16 14 12 18 18 Si 1.86798 * 119.99780 * 5.11613 * 16 14 12 19 19 H 1.48499 * 109.46784 * 84.89893 * 18 16 14 20 20 H 1.48495 * 109.47377 * 324.89649 * 18 16 14 21 21 H 1.48501 * 109.47255 * 204.89542 * 18 16 14 22 22 O 1.42895 * 109.48391 * 239.97328 * 2 1 3 23 23 H 1.08998 * 109.47516 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47667 * 300.02917 * 1 2 3 25 25 H 1.09011 * 109.46444 * 60.02423 * 1 2 3 26 26 H 1.09004 * 109.46907 * 63.02370 * 3 2 1 27 27 H 1.08999 * 109.47014 * 183.01651 * 3 2 1 28 28 H 1.08000 * 122.54167 * 359.97438 * 5 4 3 29 29 H 1.08004 * 125.20401 * 180.21143 * 6 5 4 30 30 H 1.08001 * 125.20849 * 359.97438 * 8 4 3 31 31 H 1.08999 * 109.52340 * 297.50049 * 9 2 1 32 32 H 1.08997 * 109.52063 * 57.69672 * 9 2 1 33 33 H 1.09004 * 109.54406 * 62.88250 * 10 9 2 34 34 H 1.08991 * 109.54454 * 183.06520 * 10 9 2 35 35 H 1.09006 * 109.52216 * 297.07497 * 11 10 9 36 36 H 1.08996 * 109.52205 * 176.88362 * 11 10 9 37 37 H 0.97003 * 120.00513 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 1.4779 2.1742 -1.1913 5 6 2.0763 2.1363 -2.4389 6 6 1.4474 2.8348 -3.3854 7 16 0.0240 3.6080 -2.7002 8 6 0.3689 2.9120 -1.1221 9 6 2.0407 -0.7222 1.2496 10 6 3.5712 -0.7706 1.2122 11 6 4.0179 -1.4597 -0.0809 12 6 3.4308 -0.7090 -1.2791 13 1 3.8192 0.3093 -1.2960 14 6 3.8170 -1.4154 -2.5530 15 1 3.1426 -2.1312 -2.9994 16 6 5.0313 -1.1480 -3.1487 17 7 5.3262 -1.6871 -4.3114 18 14 6.2574 -0.0197 -2.3044 19 1 7.0643 -0.8030 -1.3346 20 1 5.5275 1.0559 -1.5865 21 1 7.1553 0.5849 -3.3210 22 8 2.0067 -0.6741 -1.1663 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5143 0.8897 25 1 -0.3632 0.5135 -0.8903 26 1 1.7219 1.9404 0.9159 27 1 3.1289 1.4427 -0.0541 28 1 2.9819 1.5804 -2.6322 29 1 1.7661 2.9169 -4.4141 30 1 -0.2266 3.0593 -0.2332 31 1 1.7150 -0.1843 2.1399 32 1 1.6446 -1.7375 1.2709 33 1 3.9690 0.2439 1.2407 34 1 3.9394 -1.3310 2.0714 35 1 3.6617 -2.4899 -0.0865 36 1 5.1061 -1.4492 -0.1421 37 1 6.1804 -1.4987 -4.7308 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690008421.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:45 Heat of formation + Delta-G solvation = -41.438564 kcal Electronic energy + Delta-G solvation = -19284.585328 eV Core-core repulsion = 16538.430425 eV Total energy + Delta-G solvation = -2746.154903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.13668 -38.56423 -35.44617 -34.34523 -33.79484 -31.06624 -29.40607 -28.34049 -26.80169 -24.02585 -23.50320 -22.48350 -20.49494 -19.26295 -18.98528 -18.22279 -17.27801 -16.81598 -16.24842 -15.73620 -15.42019 -14.94917 -14.74790 -14.49097 -13.96237 -13.83652 -13.63373 -13.39384 -13.22766 -13.10686 -12.87283 -12.72021 -12.65907 -12.46034 -12.25724 -11.86976 -11.81943 -11.66297 -11.57445 -11.23039 -10.94068 -10.53845 -9.96898 -9.56265 -9.08511 -8.36297 -6.40656 0.17250 0.86305 1.12502 1.26269 1.28134 1.37173 1.87971 2.24979 2.89050 3.31667 3.90573 3.91548 4.13662 4.15548 4.21612 4.33386 4.42304 4.46674 4.57268 4.66217 4.72905 4.83116 4.85129 4.91971 5.01227 5.04208 5.11954 5.14322 5.24548 5.29682 5.33305 5.45702 5.53330 5.62942 5.67479 5.77918 6.09922 6.65025 6.98165 7.26537 8.81167 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.009088 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.049983 B = 3080.410614 C = 4074.026747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.103 3.897 3 C -0.087 4.087 4 C -0.096 4.096 5 C -0.137 4.137 6 C -0.230 4.230 7 S 0.107 5.893 8 C -0.206 4.206 9 C -0.133 4.133 10 C -0.124 4.124 11 C -0.151 4.151 12 C 0.197 3.803 13 H 0.027 0.973 14 C -0.516 4.516 15 H 0.024 0.976 16 C 0.023 3.977 17 N -0.943 5.943 18 Si 0.928 3.072 19 H -0.256 1.256 20 H -0.241 1.241 21 H -0.284 1.284 22 O -0.389 6.389 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.164 0.836 30 H 0.193 0.807 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.838 11.379 12.727 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.064 3.936 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.168 4.168 6 C -0.364 4.364 7 S 0.370 5.630 8 C -0.341 4.341 9 C -0.170 4.170 10 C -0.161 4.161 11 C -0.189 4.189 12 C 0.140 3.860 13 H 0.045 0.955 14 C -0.554 4.554 15 H 0.042 0.958 16 C -0.175 4.175 17 N -0.583 5.583 18 Si 0.752 3.248 19 H -0.181 1.181 20 H -0.165 1.165 21 H -0.209 1.209 22 O -0.309 6.309 23 H 0.070 0.930 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.182 0.818 30 H 0.211 0.789 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.977 12.236 11.850 19.740 hybrid contribution 2.349 -1.151 -0.106 2.618 sum -7.628 11.084 11.744 17.860 Atomic orbital electron populations 1.21783 0.91760 1.02217 1.03064 1.21695 0.95538 0.90118 0.86281 1.21051 1.00304 0.95132 0.96159 1.18792 0.96617 0.99850 0.95548 1.20301 1.02109 1.00400 0.93961 1.25726 1.01036 1.05899 1.03786 1.83715 1.26037 1.50539 1.02719 1.25674 1.01688 1.04911 1.01801 1.22139 0.95347 1.01335 0.98195 1.21729 0.96519 1.00916 0.96931 1.22377 0.99669 1.00335 0.96562 1.19924 0.79251 0.94406 0.92415 0.95542 1.21051 1.02463 1.23496 1.08342 0.95795 1.25664 0.99772 0.97342 0.94711 1.70037 1.24181 1.46871 1.17220 0.86071 0.79302 0.80363 0.79114 1.18064 1.16476 1.20941 1.88009 1.22543 1.77066 1.43326 0.92983 0.88208 0.92985 0.87102 0.92151 0.87355 0.81831 0.78947 0.87944 0.91898 0.91512 0.90171 0.93327 0.93361 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.31 71.98 0.60 -2.90 16 2 C 0.10 3.32 0.79 -10.76 -0.01 3.32 16 3 C -0.09 -2.54 3.88 29.85 0.12 -2.43 16 4 C -0.10 -3.02 4.05 -20.92 -0.08 -3.11 16 5 C -0.14 -5.20 9.33 21.22 0.20 -5.00 16 6 C -0.23 -7.54 11.23 66.72 0.75 -6.79 16 7 S 0.11 2.70 23.34 -56.49 -1.32 1.38 16 8 C -0.21 -5.12 9.60 66.72 0.64 -4.48 16 9 C -0.13 -3.62 4.92 30.69 0.15 -3.47 16 10 C -0.12 -3.77 5.72 30.71 0.18 -3.59 16 11 C -0.15 -6.32 5.20 30.69 0.16 -6.16 16 12 C 0.20 9.48 1.39 29.88 0.04 9.52 16 13 H 0.03 1.29 2.56 -2.39 -0.01 1.28 16 14 C -0.52 -30.91 9.25 25.60 0.24 -30.68 16 15 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 16 C 0.02 1.36 5.47 84.65 0.46 1.82 16 17 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 18 Si 0.93 43.83 25.86 68.60 1.77 45.61 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.24 -10.50 6.14 99.48 0.61 -9.89 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 O -0.39 -17.72 9.20 -148.98 -1.37 -19.10 16 23 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.52 6.39 -2.38 -0.02 1.50 16 26 H 0.11 2.33 8.10 -2.38 -0.02 2.31 16 27 H 0.06 2.01 4.97 -2.39 -0.01 2.00 16 28 H 0.11 4.94 6.44 -2.91 -0.02 4.92 16 29 H 0.16 5.01 8.06 -2.91 -0.02 4.98 16 30 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.91 6.69 -2.38 -0.02 1.90 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.05 2.05 6.32 -2.39 -0.02 2.03 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -70.40 294.65 3.78 -66.62 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.96 Total: 19.01 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 3.44 Total: -53.96 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.30 Total: -59.55 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.37 Total: -19.10 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.77 Total: 45.61 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.32 Total: 1.38 kcal Total: -70.40 3.78 -66.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690008421.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.177 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds