Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46600 * 305.00222 * 11 10 9 13 13 C 1.52999 * 109.47184 * 185.00136 * 11 10 9 14 14 C 1.50705 * 109.46954 * 174.99764 * 13 11 10 15 15 C 1.38240 * 119.97378 * 269.72672 * 14 13 11 16 16 C 1.38205 * 120.02314 * 179.72734 * 15 14 13 17 17 C 1.38458 * 119.97318 * 0.56591 * 16 15 14 18 18 F 1.35100 * 120.02795 * 179.68481 * 17 16 15 19 19 C 1.38461 * 119.94926 * 359.70727 * 17 16 15 20 20 C 1.38203 * 119.97320 * 0.02562 * 19 17 16 21 21 C 1.50694 * 109.47086 * 64.99898 * 11 10 9 22 22 O 1.20826 * 119.99969 * 0.02562 * 21 11 10 23 23 O 1.34227 * 120.00305 * 180.02562 * 21 11 10 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 28 28 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 29 29 H 1.08992 * 109.47354 * 294.99729 * 13 11 10 30 30 H 1.09003 * 109.47170 * 55.00201 * 13 11 10 31 31 H 1.08001 * 119.99213 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.01293 * 180.25486 * 16 15 14 33 33 H 1.08001 * 120.01552 * 180.02562 * 19 17 16 34 34 H 1.07995 * 119.98741 * 180.02562 * 20 19 17 35 35 H 0.96697 * 117.00820 * 179.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 1 0.7878 -5.0079 0.8370 13 6 2.4698 -6.1474 0.1201 14 6 1.7109 -7.4438 0.2419 15 6 1.3569 -7.9222 1.4896 16 6 0.6561 -9.1081 1.6022 17 6 0.3188 -9.8229 0.4654 18 9 -0.3607 -10.9854 0.5745 19 6 0.6789 -9.3455 -0.7835 20 6 1.3749 -8.1566 -0.8939 21 6 0.7096 -5.1204 -1.2926 22 8 0.7667 -4.2456 -2.1241 23 8 -0.0404 -6.2109 -1.5163 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6247 -2.5562 -0.8920 27 1 2.8720 -3.6035 -0.8927 28 1 2.8719 -3.6051 0.8873 29 1 3.1049 -6.1800 -0.7650 30 1 3.0883 -6.0039 1.0062 31 1 1.6245 -7.3671 2.3766 32 1 0.3760 -9.4796 2.5769 33 1 0.4161 -9.9020 -1.6710 34 1 1.6555 -7.7839 -1.8678 35 1 -0.5169 -6.2513 -2.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691825842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = -131.973579 kcal Electronic energy + Delta-G solvation = -19713.233491 eV Core-core repulsion = 16396.939519 eV Total energy + Delta-G solvation = -3316.293972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.93643 -40.27536 -38.91794 -36.02842 -35.01095 -33.04272 -31.16754 -31.15348 -28.44638 -25.24443 -24.08720 -23.10532 -22.02666 -20.72005 -19.63973 -17.73380 -17.64612 -16.75563 -16.22133 -15.96494 -15.68187 -15.63446 -15.07900 -14.44219 -14.15098 -13.66409 -13.58572 -13.27597 -13.07356 -12.51999 -12.32391 -12.25198 -11.71066 -11.48554 -11.31349 -11.12379 -11.00881 -10.86967 -10.56714 -10.49856 -10.13998 -9.61197 -9.31328 -9.07584 -9.01046 -8.48258 -8.25387 -5.93200 -3.94559 1.10757 1.22540 2.70856 3.36862 3.41043 3.43430 3.43973 3.58829 4.22367 4.50022 4.65251 4.68768 4.83268 5.11638 5.20859 5.24843 5.39119 5.42652 5.43515 5.76585 5.90192 5.93867 5.96189 6.07581 6.13140 6.20907 6.48679 6.56499 6.69644 6.86052 6.88299 7.10039 7.72721 7.93773 8.09113 8.37236 8.49517 9.12534 9.67961 11.18463 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041803 B = 0.003873 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.650116 B = 7227.243980 C = 7422.201840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.012 3.988 10 C -0.099 4.099 11 C -0.072 4.072 12 H 0.104 0.896 13 C -0.074 4.074 14 C -0.088 4.088 15 C -0.085 4.085 16 C -0.158 4.158 17 C 0.089 3.911 18 F -0.147 7.147 19 C -0.157 4.157 20 C -0.051 4.051 21 C 0.473 3.527 22 O -0.489 6.489 23 O -0.517 6.517 24 H 0.260 0.740 25 H 0.010 0.990 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -19.577 0.746 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.072 0.928 9 C -0.025 4.025 10 C -0.137 4.137 11 C -0.091 4.091 12 H 0.122 0.878 13 C -0.111 4.111 14 C -0.089 4.089 15 C -0.103 4.103 16 C -0.177 4.177 17 C 0.070 3.930 18 F -0.125 7.125 19 C -0.176 4.176 20 C -0.069 4.069 21 C 0.314 3.686 22 O -0.374 6.374 23 O -0.329 6.329 24 H 0.069 0.931 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 2.307 -19.219 0.888 19.378 hybrid contribution -0.217 0.764 -0.538 0.959 sum 2.090 -18.455 0.350 18.576 Atomic orbital electron populations 1.69959 1.06051 1.26532 1.51017 1.25004 0.94819 0.99148 0.95491 0.86679 0.79580 0.83301 0.78536 1.20278 1.21362 1.20308 1.21163 0.92859 0.91085 1.50369 0.92843 1.19284 0.94208 0.91052 0.97933 1.21679 0.99084 0.91519 1.01381 1.21361 0.96837 0.97853 0.93061 0.87803 1.20670 0.96610 0.89688 1.04139 1.19927 0.99340 0.96465 0.93123 1.20915 0.96906 0.94874 0.97566 1.21057 1.02177 0.96741 0.97703 1.17715 0.96907 0.83591 0.94796 1.91473 1.77778 1.46241 1.97032 1.21037 1.02193 0.98303 0.96026 1.20758 0.95355 0.92349 0.98449 1.23622 0.77214 0.78319 0.89443 1.90777 1.60836 1.39531 1.46257 1.84759 1.59549 1.44011 1.44610 0.93070 0.97193 0.94432 0.92190 0.91793 0.90409 0.89120 0.84989 0.85121 0.85232 0.85549 0.74630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.29 55.43 0.74 -26.89 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.01 0.32 4.72 -27.88 -0.13 0.18 16 10 C -0.10 -1.95 4.27 -26.73 -0.11 -2.06 16 11 C -0.07 -1.12 2.32 -91.77 -0.21 -1.33 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 C -0.07 -0.86 4.83 -27.88 -0.13 -0.99 16 14 C -0.09 -0.98 4.55 -104.62 -0.48 -1.46 16 15 C -0.08 -0.88 9.70 -39.59 -0.38 -1.27 16 16 C -0.16 -1.66 10.03 -39.51 -0.40 -2.06 16 17 C 0.09 1.01 7.30 -39.42 -0.29 0.72 16 18 F -0.15 -1.75 17.27 2.25 0.04 -1.71 16 19 C -0.16 -1.63 10.03 -39.51 -0.40 -2.03 16 20 C -0.05 -0.54 6.88 -39.59 -0.27 -0.81 16 21 C 0.47 7.86 7.25 36.00 0.26 8.12 16 22 O -0.49 -10.36 14.73 -18.75 -0.28 -10.63 16 23 O -0.52 -6.54 9.29 -39.25 -0.36 -6.91 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 1.08 5.96 -51.93 -0.31 0.77 16 27 H 0.06 1.21 7.95 -51.93 -0.41 0.80 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.13 1.22 7.58 -52.49 -0.40 0.82 16 35 H 0.40 3.59 9.10 45.56 0.41 4.00 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -34.02 303.28 -6.89 -40.91 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -3.62 Total: 0.25 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.96 Total: -16.61 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.89 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.64 Total: -17.54 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.02 -6.89 -40.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691825842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.060 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds