Wall clock time and date at job start Mon Mar 30 2020 06:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46600 * 305.00222 * 11 10 9 13 13 C 1.52999 * 109.47184 * 185.00136 * 11 10 9 14 14 C 1.50705 * 109.46954 * 174.99764 * 13 11 10 15 15 C 1.38240 * 119.97378 * 269.72672 * 14 13 11 16 16 C 1.38205 * 120.02314 * 179.72734 * 15 14 13 17 17 C 1.38458 * 119.97318 * 0.56591 * 16 15 14 18 18 F 1.35100 * 120.02795 * 179.68481 * 17 16 15 19 19 C 1.38461 * 119.94926 * 359.70727 * 17 16 15 20 20 C 1.38203 * 119.97320 * 0.02562 * 19 17 16 21 21 C 1.50694 * 109.47086 * 64.99898 * 11 10 9 22 22 O 1.20826 * 119.99969 * 0.02562 * 21 11 10 23 23 O 1.34227 * 120.00305 * 180.02562 * 21 11 10 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 26 26 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 27 27 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 28 28 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 29 29 H 1.08992 * 109.47354 * 294.99729 * 13 11 10 30 30 H 1.09003 * 109.47170 * 55.00201 * 13 11 10 31 31 H 1.08001 * 119.99213 * 359.97438 * 15 14 13 32 32 H 1.08002 * 120.01293 * 180.25486 * 16 15 14 33 33 H 1.08001 * 120.01552 * 180.02562 * 19 17 16 34 34 H 1.07995 * 119.98741 * 180.02562 * 20 19 17 35 35 H 0.96697 * 117.00820 * 179.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0046 12 1 0.7878 -5.0079 0.8370 13 6 2.4698 -6.1474 0.1201 14 6 1.7109 -7.4438 0.2419 15 6 1.3569 -7.9222 1.4896 16 6 0.6561 -9.1081 1.6022 17 6 0.3188 -9.8229 0.4654 18 9 -0.3607 -10.9854 0.5745 19 6 0.6789 -9.3455 -0.7835 20 6 1.3749 -8.1566 -0.8939 21 6 0.7096 -5.1204 -1.2926 22 8 0.7667 -4.2456 -2.1241 23 8 -0.0404 -6.2109 -1.5163 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6247 -2.5562 -0.8920 27 1 2.8720 -3.6035 -0.8927 28 1 2.8719 -3.6051 0.8873 29 1 3.1049 -6.1800 -0.7650 30 1 3.0883 -6.0039 1.0062 31 1 1.6245 -7.3671 2.3766 32 1 0.3760 -9.4796 2.5769 33 1 0.4161 -9.9020 -1.6710 34 1 1.6555 -7.7839 -1.8678 35 1 -0.5169 -6.2513 -2.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691825842.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:19 Heat of formation + Delta-G solvation = -152.539627 kcal Electronic energy + Delta-G solvation = -19714.125302 eV Core-core repulsion = 16396.939519 eV Total energy + Delta-G solvation = -3317.185783 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.80923 -41.51558 -39.83360 -37.31926 -36.38555 -34.93759 -32.63683 -31.94857 -29.93938 -26.76556 -25.50872 -23.90937 -23.45163 -21.98949 -21.00485 -18.93685 -18.55645 -18.41097 -17.85384 -17.01960 -16.80212 -16.51395 -16.36698 -16.20761 -15.09514 -14.81690 -14.58423 -14.42896 -14.30759 -13.97312 -13.90845 -13.59155 -12.92952 -12.84920 -12.78741 -12.62829 -12.34519 -12.30304 -12.05200 -11.86873 -11.68427 -11.36694 -11.09810 -11.01829 -10.46070 -9.86649 -9.37419 -8.15842 -6.25630 0.26714 0.43875 1.39531 1.40112 1.44099 1.51354 2.29100 2.43276 2.74061 3.17722 3.40955 3.69530 3.87708 4.06448 4.08509 4.17799 4.24577 4.47194 4.47807 4.73901 4.76080 4.95979 4.98553 5.08534 5.13483 5.22421 5.28924 5.31015 5.40485 5.53689 5.70962 5.72238 5.84722 5.99891 6.06607 6.29496 6.92340 7.17994 7.42259 8.96197 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041803 B = 0.003873 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.650116 B = 7227.243980 C = 7422.201840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.014 3.986 10 C -0.087 4.087 11 C -0.067 4.067 12 H 0.108 0.892 13 C -0.062 4.062 14 C -0.097 4.097 15 C -0.086 4.086 16 C -0.162 4.162 17 C 0.072 3.928 18 F -0.154 7.154 19 C -0.159 4.159 20 C -0.056 4.056 21 C 0.480 3.520 22 O -0.543 6.543 23 O -0.500 6.500 24 H 0.261 0.739 25 H -0.013 1.013 26 H 0.003 0.997 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -20.281 1.372 20.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.202 4.202 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.023 4.023 10 C -0.125 4.125 11 C -0.087 4.087 12 H 0.126 0.874 13 C -0.100 4.100 14 C -0.097 4.097 15 C -0.104 4.104 16 C -0.181 4.181 17 C 0.053 3.947 18 F -0.132 7.132 19 C -0.177 4.177 20 C -0.074 4.074 21 C 0.323 3.677 22 O -0.433 6.433 23 O -0.313 6.313 24 H 0.070 0.930 25 H 0.006 0.994 26 H 0.021 0.979 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.131 0.869 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 3.601 -19.970 1.519 20.349 hybrid contribution -0.689 0.894 -0.744 1.352 sum 2.911 -19.076 0.775 19.313 Atomic orbital electron populations 1.70111 1.07914 1.27556 1.52196 1.25997 0.95738 1.03425 0.95015 0.85525 0.78269 0.78165 0.79229 1.19506 1.21084 1.18627 1.21706 0.93571 0.92524 1.49866 0.92022 1.19171 0.94832 0.93177 0.95108 1.21434 0.97864 0.91314 1.01870 1.21252 0.97424 0.97370 0.92607 0.87416 1.20590 0.95686 0.88085 1.05591 1.19940 0.99779 0.96333 0.93665 1.21155 0.96368 0.94841 0.98052 1.21289 1.01853 0.96697 0.98251 1.17988 0.97429 0.83695 0.95590 1.91455 1.78018 1.46666 1.97100 1.21219 1.01795 0.98324 0.96388 1.20900 0.95264 0.92404 0.98808 1.23831 0.76758 0.78015 0.89086 1.90769 1.62827 1.41547 1.48127 1.84712 1.58788 1.41956 1.45811 0.93040 0.99427 0.97878 0.92984 0.89840 0.89752 0.86926 0.83148 0.83636 0.83765 0.84745 0.72531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.29 21.45 0.28 -58.77 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.54 -31.31 9.11 25.60 0.23 -31.08 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.01 0.75 4.72 29.85 0.14 0.90 16 10 C -0.09 -3.39 4.27 30.60 0.13 -3.26 16 11 C -0.07 -2.02 2.32 -11.54 -0.03 -2.04 16 12 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 13 C -0.06 -1.29 4.83 29.85 0.14 -1.14 16 14 C -0.10 -1.91 4.55 -19.86 -0.09 -2.00 16 15 C -0.09 -1.57 9.70 22.26 0.22 -1.35 16 16 C -0.16 -3.06 10.03 22.31 0.22 -2.84 16 17 C 0.07 1.51 7.30 22.38 0.16 1.67 16 18 F -0.15 -3.48 17.27 44.97 0.78 -2.70 16 19 C -0.16 -2.99 10.03 22.31 0.22 -2.77 16 20 C -0.06 -1.05 6.88 22.26 0.15 -0.90 16 21 C 0.48 15.75 7.25 71.23 0.52 16.26 16 22 O -0.54 -23.56 14.73 21.96 0.32 -23.24 16 23 O -0.50 -11.93 9.29 -51.39 -0.48 -12.41 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.00 0.18 5.96 -2.39 -0.01 0.16 16 27 H 0.05 2.09 7.95 -2.39 -0.02 2.07 16 28 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.08 1.66 8.08 -2.39 -0.02 1.64 16 30 H 0.11 1.86 8.08 -2.39 -0.02 1.84 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 32 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.13 2.28 7.58 -2.91 -0.02 2.26 16 35 H 0.41 6.90 9.10 -74.06 -0.67 6.23 16 Total: -1.00 -74.91 303.28 5.85 -69.06 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.43 Total: 9.16 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 2.49 Total: -28.37 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.28 Total: -58.77 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.15 Total: -35.65 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -74.91 5.85 -69.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691825842.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.483 kcal (2) G-P(sol) polarization free energy of solvation -74.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds