Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48503 * 109.47422 * 239.99983 * 3 2 1 5 5 H 1.48499 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47088 * 120.00304 * 3 2 1 7 7 C 1.37877 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46754 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46822 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46824 * 55.00360 * 11 10 9 13 13 C 1.53000 * 109.46846 * 174.99943 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 13 11 10 15 15 C 1.38248 * 119.97052 * 269.72758 * 14 13 11 16 16 C 1.38206 * 120.02070 * 179.72413 * 15 14 13 17 17 C 1.38459 * 119.97516 * 0.57388 * 16 15 14 18 18 F 1.35092 * 120.02804 * 179.67826 * 17 16 15 19 19 C 1.38466 * 119.94783 * 359.69871 * 17 16 15 20 20 C 1.38201 * 119.97134 * 0.02562 * 19 17 16 21 21 C 1.50697 * 109.47300 * 294.99983 * 11 10 9 22 22 O 1.20823 * 120.00316 * 239.99724 * 21 11 10 23 23 O 1.34230 * 119.99844 * 60.00100 * 21 11 10 24 24 H 0.97002 * 120.00069 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47013 * 59.99962 * 9 7 2 26 26 H 1.08998 * 109.47007 * 299.99752 * 9 7 2 27 27 H 1.09004 * 109.47264 * 60.00272 * 10 9 7 28 28 H 1.08998 * 109.47289 * 299.99736 * 10 9 7 29 29 H 1.09002 * 109.47398 * 305.00335 * 13 11 10 30 30 H 1.09001 * 109.47194 * 65.00515 * 13 11 10 31 31 H 1.07993 * 119.98843 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.00870 * 180.25174 * 16 15 14 33 33 H 1.07995 * 120.01164 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.98533 * 179.97438 * 20 19 17 35 35 H 0.96697 * 117.00188 * 179.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 1 0.7874 -5.0069 -0.8423 13 6 2.4699 -6.1472 -0.1282 14 6 1.7110 -7.4434 -0.2511 15 6 1.3803 -8.1603 0.8837 16 6 0.6795 -9.3463 0.7725 17 6 0.3189 -9.8223 -0.4767 18 9 -0.3605 -10.9847 -0.5870 19 6 0.6556 -9.1061 -1.6129 20 6 1.3515 -7.9176 -1.4989 21 6 0.7107 -5.1221 1.2873 22 8 0.9308 -6.0510 2.0280 23 8 -0.2195 -4.2106 1.6121 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8897 27 1 2.8728 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 3.0878 -6.0024 -1.0144 30 1 3.1057 -6.1809 0.7565 31 1 1.6662 -7.7915 1.8576 32 1 0.4177 -9.9042 1.6594 33 1 0.3753 -9.4766 -2.5878 34 1 1.6146 -7.3590 -2.3850 35 1 -0.6875 -4.3396 2.4484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691825843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = -130.529059 kcal Electronic energy + Delta-G solvation = -19683.262214 eV Core-core repulsion = 16367.030881 eV Total energy + Delta-G solvation = -3316.231333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.89667 -40.31106 -38.83166 -35.79170 -35.27411 -32.98912 -31.23768 -31.06878 -28.39623 -25.31272 -23.96268 -23.03041 -22.03692 -20.63836 -19.71738 -17.97876 -17.52053 -16.75559 -16.25002 -15.94515 -15.64527 -15.57333 -14.95865 -14.46631 -13.96295 -13.64486 -13.33828 -13.27334 -13.12405 -12.44087 -12.33002 -12.27261 -11.83857 -11.49409 -11.28398 -11.10092 -10.93393 -10.79017 -10.59223 -10.54585 -10.00578 -9.72747 -9.36275 -9.07677 -9.01313 -8.44342 -8.31571 -5.98753 -4.01143 1.14874 1.29633 2.64495 3.32459 3.37480 3.39447 3.53108 3.62378 4.28096 4.45231 4.74798 4.81231 4.89633 5.11140 5.23766 5.36324 5.37316 5.48317 5.65121 5.82034 5.84288 5.98954 6.07760 6.12923 6.15730 6.31833 6.42479 6.59693 6.67604 6.90820 7.00037 7.07509 7.70387 7.88144 8.05539 8.39338 8.42560 9.06773 9.61988 11.11904 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.003877 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.776493 B = 7220.740809 C = 7400.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.011 3.989 10 C -0.104 4.104 11 C -0.079 4.079 12 H 0.105 0.895 13 C -0.066 4.066 14 C -0.098 4.098 15 C -0.060 4.060 16 C -0.164 4.164 17 C 0.088 3.912 18 F -0.147 7.147 19 C -0.163 4.163 20 C -0.088 4.088 21 C 0.490 3.510 22 O -0.534 6.534 23 O -0.488 6.488 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -16.041 -0.448 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.026 4.026 10 C -0.142 4.142 11 C -0.098 4.098 12 H 0.123 0.877 13 C -0.103 4.103 14 C -0.098 4.098 15 C -0.077 4.077 16 C -0.183 4.183 17 C 0.069 3.931 18 F -0.125 7.125 19 C -0.182 4.182 20 C -0.106 4.106 21 C 0.335 3.665 22 O -0.425 6.425 23 O -0.297 6.297 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.843 -16.141 -0.637 16.258 hybrid contribution -0.147 0.644 0.482 0.818 sum 1.696 -15.497 -0.154 15.590 Atomic orbital electron populations 1.69964 1.05948 1.26561 1.50610 1.24989 0.94814 0.99070 0.95413 0.86712 0.79622 0.83388 0.78567 1.20292 1.21334 1.20330 1.21204 0.92876 0.91195 1.50902 0.92905 1.19372 0.93859 0.90495 0.98877 1.21735 0.99140 0.91714 1.01588 1.21287 0.97071 0.98141 0.93287 0.87748 1.20587 0.96485 0.89368 1.03909 1.20028 0.99873 0.96996 0.92923 1.21551 0.94463 0.91452 1.00270 1.21216 1.02592 0.98580 0.95940 1.17792 0.96894 0.83572 0.94872 1.91465 1.77780 1.46270 1.97029 1.21046 1.02688 0.96811 0.97647 1.20974 0.97063 0.94925 0.97651 1.23596 0.77059 0.77724 0.88140 1.90521 1.66395 1.32604 1.52976 1.84905 1.49817 1.50865 1.44155 0.93029 0.96613 0.93611 0.92719 0.91517 0.89431 0.89926 0.82705 0.85240 0.85123 0.84996 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.01 0.26 4.61 -27.88 -0.13 0.13 16 10 C -0.10 -1.93 4.61 -26.73 -0.12 -2.05 16 11 C -0.08 -1.22 2.32 -91.77 -0.21 -1.43 16 12 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 13 C -0.07 -0.84 4.60 -27.88 -0.13 -0.97 16 14 C -0.10 -1.26 4.84 -104.62 -0.51 -1.76 16 15 C -0.06 -0.80 7.93 -39.59 -0.31 -1.11 16 16 C -0.16 -2.09 10.03 -39.51 -0.40 -2.49 16 17 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 18 F -0.15 -1.93 17.27 2.25 0.04 -1.89 16 19 C -0.16 -1.91 10.03 -39.51 -0.40 -2.30 16 20 C -0.09 -1.02 9.70 -39.60 -0.38 -1.41 16 21 C 0.49 8.06 7.35 36.00 0.26 8.32 16 22 O -0.53 -8.78 12.35 -18.75 -0.23 -9.01 16 23 O -0.49 -8.18 10.57 -39.26 -0.41 -8.60 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 1.17 5.46 -51.93 -0.28 0.89 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 30 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 31 H 0.16 2.15 5.86 -52.49 -0.31 1.85 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.40 4.78 9.10 45.56 0.41 5.19 16 LS Contribution 301.41 15.07 4.54 4.54 Total: -1.00 -31.09 301.41 -6.88 -37.97 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.51 Total: 3.54 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.02 Total: -17.30 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.45 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.65 Total: -17.61 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.09 -6.88 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691825843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.557 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds