Wall clock time and date at job start Mon Mar 30 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99707 * 2 1 4 4 H 1.48503 * 109.47422 * 239.99983 * 3 2 1 5 5 H 1.48499 * 109.47327 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47088 * 120.00304 * 3 2 1 7 7 C 1.37877 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00128 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99798 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46754 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46822 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46824 * 55.00360 * 11 10 9 13 13 C 1.53000 * 109.46846 * 174.99943 * 11 10 9 14 14 C 1.50703 * 109.46912 * 185.00257 * 13 11 10 15 15 C 1.38248 * 119.97052 * 269.72758 * 14 13 11 16 16 C 1.38206 * 120.02070 * 179.72413 * 15 14 13 17 17 C 1.38459 * 119.97516 * 0.57388 * 16 15 14 18 18 F 1.35092 * 120.02804 * 179.67826 * 17 16 15 19 19 C 1.38466 * 119.94783 * 359.69871 * 17 16 15 20 20 C 1.38201 * 119.97134 * 0.02562 * 19 17 16 21 21 C 1.50697 * 109.47300 * 294.99983 * 11 10 9 22 22 O 1.20823 * 120.00316 * 239.99724 * 21 11 10 23 23 O 1.34230 * 119.99844 * 60.00100 * 21 11 10 24 24 H 0.97002 * 120.00069 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47013 * 59.99962 * 9 7 2 26 26 H 1.08998 * 109.47007 * 299.99752 * 9 7 2 27 27 H 1.09004 * 109.47264 * 60.00272 * 10 9 7 28 28 H 1.08998 * 109.47289 * 299.99736 * 10 9 7 29 29 H 1.09002 * 109.47398 * 305.00335 * 13 11 10 30 30 H 1.09001 * 109.47194 * 65.00515 * 13 11 10 31 31 H 1.07993 * 119.98843 * 359.97438 * 15 14 13 32 32 H 1.07997 * 120.00870 * 180.25174 * 16 15 14 33 33 H 1.07995 * 120.01164 * 179.97438 * 19 17 16 34 34 H 1.08001 * 119.98533 * 179.97438 * 20 19 17 35 35 H 0.96697 * 117.00188 * 179.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 1 0.7874 -5.0069 -0.8423 13 6 2.4699 -6.1472 -0.1282 14 6 1.7110 -7.4434 -0.2511 15 6 1.3803 -8.1603 0.8837 16 6 0.6795 -9.3463 0.7725 17 6 0.3189 -9.8223 -0.4767 18 9 -0.3605 -10.9847 -0.5870 19 6 0.6556 -9.1061 -1.6129 20 6 1.3515 -7.9176 -1.4989 21 6 0.7107 -5.1221 1.2873 22 8 0.9308 -6.0510 2.0280 23 8 -0.2195 -4.2106 1.6121 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8897 27 1 2.8728 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 3.0878 -6.0024 -1.0144 30 1 3.1057 -6.1809 0.7565 31 1 1.6662 -7.7915 1.8576 32 1 0.4177 -9.9042 1.6594 33 1 0.3753 -9.4766 -2.5878 34 1 1.6146 -7.3590 -2.3850 35 1 -0.6875 -4.3396 2.4484 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691825843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:22 Heat of formation + Delta-G solvation = -147.791760 kcal Electronic energy + Delta-G solvation = -19684.010781 eV Core-core repulsion = 16367.030881 eV Total energy + Delta-G solvation = -3316.979900 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.88548 -41.54028 -39.85075 -37.06647 -36.72902 -34.79845 -32.66316 -31.99880 -29.91143 -26.76752 -25.45604 -23.96787 -23.41781 -22.01817 -20.99832 -19.23941 -18.59258 -18.26989 -17.91135 -17.06925 -16.77740 -16.57681 -16.38219 -16.12518 -15.00162 -14.69842 -14.64258 -14.51182 -14.30521 -14.04207 -13.78826 -13.67267 -12.92503 -12.79286 -12.74288 -12.72615 -12.36351 -12.31806 -12.05887 -11.76087 -11.55268 -11.23574 -11.13817 -10.95809 -10.41529 -9.95921 -9.44764 -8.10580 -6.19788 0.17924 0.36161 1.35057 1.44447 1.45931 1.53543 2.35432 2.46497 2.65836 3.22914 3.33284 3.75218 3.85182 3.94267 4.02815 4.18672 4.37158 4.42826 4.48924 4.63522 4.74855 4.95422 4.98319 5.03935 5.12735 5.19705 5.23627 5.31699 5.36371 5.62783 5.70221 5.83791 5.90693 6.03247 6.08436 6.34918 6.99877 7.18886 7.47749 9.00023 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.003877 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.776493 B = 7220.740809 C = 7400.747959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.011 3.989 10 C -0.091 4.091 11 C -0.072 4.072 12 H 0.107 0.893 13 C -0.058 4.058 14 C -0.106 4.106 15 C -0.072 4.072 16 C -0.172 4.172 17 C 0.073 3.927 18 F -0.151 7.151 19 C -0.162 4.162 20 C -0.086 4.086 21 C 0.484 3.516 22 O -0.535 6.535 23 O -0.507 6.507 24 H 0.260 0.740 25 H -0.010 1.010 26 H 0.029 0.971 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -16.305 -1.270 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.129 4.129 11 C -0.091 4.091 12 H 0.125 0.875 13 C -0.095 4.095 14 C -0.106 4.106 15 C -0.089 4.089 16 C -0.190 4.190 17 C 0.054 3.946 18 F -0.130 7.130 19 C -0.181 4.181 20 C -0.104 4.104 21 C 0.329 3.671 22 O -0.426 6.426 23 O -0.319 6.319 24 H 0.069 0.931 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.170 0.830 34 H 0.175 0.825 35 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.074 -16.421 -1.445 16.768 hybrid contribution -0.573 0.686 0.765 1.177 sum 2.501 -15.735 -0.680 15.947 Atomic orbital electron populations 1.70099 1.07563 1.27375 1.51907 1.25862 0.95646 1.02869 0.95196 0.85655 0.78356 0.78890 0.79040 1.19208 1.21284 1.19531 1.21730 0.93485 0.92685 1.50092 0.92322 1.19277 0.94471 0.91973 0.96825 1.21489 0.97986 0.91126 1.02260 1.21233 0.97286 0.97660 0.92916 0.87461 1.20549 0.95801 0.88052 1.05126 1.20097 1.00157 0.97004 0.93331 1.21519 0.95219 0.92004 1.00200 1.21345 1.02537 0.98616 0.96549 1.18001 0.97381 0.83772 0.95428 1.91452 1.77939 1.46534 1.97061 1.21340 1.01906 0.96563 0.98244 1.21261 0.96239 0.94861 0.98027 1.23844 0.77076 0.77601 0.88548 1.90535 1.66424 1.32551 1.53108 1.84861 1.50252 1.51335 1.45490 0.93109 0.99144 0.95305 0.92797 0.90003 0.86882 0.90046 0.83682 0.84353 0.82982 0.82477 0.72724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.94 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.01 0.56 4.61 29.85 0.14 0.69 16 10 C -0.09 -3.27 4.61 30.60 0.14 -3.13 16 11 C -0.07 -2.12 2.32 -11.54 -0.03 -2.15 16 12 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 13 C -0.06 -1.35 4.60 29.85 0.14 -1.21 16 14 C -0.11 -2.50 4.84 -19.86 -0.10 -2.60 16 15 C -0.07 -1.84 7.93 22.26 0.18 -1.66 16 16 C -0.17 -4.22 10.03 22.31 0.22 -4.00 16 17 C 0.07 1.78 7.30 22.38 0.16 1.95 16 18 F -0.15 -3.80 17.27 44.97 0.78 -3.03 16 19 C -0.16 -3.41 10.03 22.32 0.22 -3.19 16 20 C -0.09 -1.76 9.70 22.26 0.22 -1.55 16 21 C 0.48 15.68 7.35 71.24 0.52 16.21 16 22 O -0.53 -17.28 12.35 21.97 0.27 -17.01 16 23 O -0.51 -17.16 10.57 -51.41 -0.54 -17.71 16 24 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 25 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 26 H 0.03 1.50 5.46 -2.39 -0.01 1.49 16 27 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.11 2.04 8.08 -2.39 -0.02 2.02 16 30 H 0.08 1.92 7.90 -2.39 -0.02 1.90 16 31 H 0.15 3.97 5.86 -2.91 -0.02 3.96 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.41 10.09 9.10 -74.06 -0.67 9.41 16 Total: -1.00 -65.98 301.41 5.77 -60.21 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.44 Total: 16.53 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.52 Total: -29.31 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.28 Total: -54.94 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.27 Total: -34.71 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.78 Total: -3.03 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -65.98 5.77 -60.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691825843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.581 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds