Wall clock time and date at job start Mon Mar 30 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48499 * 109.47146 * 270.00298 * 3 2 1 5 5 H 1.48500 * 109.46739 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00014 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46923 * 169.99458 * 14 13 12 16 16 C 1.35141 * 127.24540 * 90.00458 * 15 14 13 17 17 C 1.37808 * 114.76075 * 179.97438 * 16 15 14 18 18 N 1.30085 * 116.87851 * 359.97438 * 17 16 15 19 19 S 1.69595 * 107.15250 * 359.73276 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 21 21 C 1.53039 * 109.52227 * 61.74204 * 20 13 12 22 22 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 24 24 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 25 25 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 26 26 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 27 27 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 28 28 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 29 29 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 30 30 H 1.08992 * 109.47195 * 289.99926 * 14 13 12 31 31 H 1.09001 * 109.47336 * 50.00240 * 14 13 12 32 32 H 1.08003 * 122.61819 * 359.97363 * 16 15 14 33 33 H 1.07994 * 121.55870 * 180.02562 * 17 16 15 34 34 H 1.08993 * 109.46229 * 181.76227 * 20 13 12 35 35 H 1.09008 * 109.45803 * 301.73838 * 20 13 12 36 36 H 1.08994 * 109.50227 * 60.75933 * 21 20 13 37 37 H 1.08998 * 109.50241 * 180.83988 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.3042 -8.5185 -0.9946 16 6 2.5621 -9.2957 -1.8140 17 6 1.9639 -10.3750 -1.2005 18 7 2.1783 -10.5201 0.0743 19 16 3.1909 -9.2489 0.5591 20 6 2.4795 -6.1470 0.0615 21 6 1.4851 -4.9853 0.1231 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.9308 -3.5550 0.8394 26 1 3.6138 -2.7369 -1.3862 27 1 2.3475 -3.7260 -2.1537 28 1 4.6843 -4.7837 -0.4983 29 1 4.5411 -4.8673 -2.2704 30 1 4.4068 -7.3519 -2.4009 31 1 4.9423 -7.1802 -0.7122 32 1 2.4469 -9.0873 -2.8675 33 1 1.3466 -11.0683 -1.7524 34 1 1.9400 -7.0911 0.1356 35 1 3.1845 -6.0657 0.8889 36 1 0.7715 -5.0733 -0.6959 37 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694521646.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:15 Heat of formation + Delta-G solvation = 28.369968 kcal Electronic energy + Delta-G solvation = -17866.679644 eV Core-core repulsion = 15155.844617 eV Total energy + Delta-G solvation = -2710.835027 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38047 -38.40745 -34.94401 -32.65631 -31.35647 -30.37623 -28.32520 -26.19415 -24.39313 -22.88105 -22.62323 -20.87033 -19.75329 -18.91160 -17.87181 -16.27809 -16.03994 -15.79810 -14.76588 -14.49058 -14.27519 -14.09189 -13.54093 -13.41304 -13.17188 -12.76076 -12.52081 -12.19374 -11.99709 -11.59925 -11.18756 -11.11759 -10.83640 -10.70220 -10.64107 -10.59607 -10.30055 -9.98967 -9.70286 -9.52187 -9.08559 -8.94803 -8.73914 -8.32577 -8.20137 -5.96851 -3.98521 0.51696 1.31771 1.72557 2.32519 3.32536 3.39175 3.41785 4.04289 4.30666 4.47641 4.81196 5.03462 5.12042 5.25863 5.32963 5.38259 5.44702 5.52540 5.67638 5.69559 5.75593 5.84369 5.91348 6.09487 6.20481 6.40273 6.41810 6.53248 6.64252 6.94941 7.05729 7.17318 7.21235 7.28097 7.71211 7.87440 8.03760 8.46586 9.08097 9.64999 11.14463 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045390 B = 0.003778 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.724033 B = 7408.581768 C = 7629.232209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.099 4.099 12 C 0.056 3.944 13 N -0.528 5.528 14 C 0.126 3.874 15 C -0.156 4.156 16 C -0.193 4.193 17 C 0.089 3.911 18 N -0.464 5.464 19 S 0.247 5.753 20 C 0.050 3.950 21 C -0.110 4.110 22 H 0.259 0.741 23 H 0.017 0.983 24 H 0.014 0.986 25 H 0.052 0.948 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.066 0.934 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.674 -18.263 -3.529 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.101 4.101 11 C -0.137 4.137 12 C -0.071 4.071 13 N -0.254 5.254 14 C -0.004 4.004 15 C -0.286 4.286 16 C -0.228 4.228 17 C -0.108 4.108 18 N -0.284 5.284 19 S 0.398 5.602 20 C -0.078 4.078 21 C -0.148 4.148 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.032 0.968 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.176 0.824 33 H 0.200 0.800 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.344 -18.700 -1.754 20.167 hybrid contribution 0.669 1.249 -1.263 1.898 sum 8.013 -17.451 -3.017 19.439 Atomic orbital electron populations 1.69960 1.06037 1.26467 1.51071 1.25015 0.94785 0.99122 0.95529 0.86659 0.79871 0.83805 0.78048 1.20721 1.21316 1.19956 1.21249 0.92903 0.91023 1.50145 0.92704 1.19113 0.93615 0.91013 0.97154 1.21244 0.97940 0.94745 0.96124 1.21549 0.97844 0.95320 0.98976 1.22254 0.95384 0.89460 1.00037 1.62174 1.27236 1.00879 1.35073 1.20570 0.92546 0.85151 1.02116 1.25420 1.02670 1.01385 0.99172 1.21341 1.01622 0.96225 1.03619 1.22868 0.99266 0.98020 0.90687 1.76791 1.17250 1.18841 1.15506 1.84212 1.45519 1.17863 1.12588 1.22334 0.96656 0.99884 0.88925 1.21680 0.97467 0.94056 1.01605 0.93086 0.96502 0.96757 0.92978 0.90651 0.91720 0.95110 0.91260 0.88555 0.93340 0.82374 0.80004 0.91541 0.95106 0.91598 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.24 8.45 -34.44 -0.29 -14.53 16 8 H 0.05 1.47 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 10 C -0.08 -1.65 2.20 -90.51 -0.20 -1.85 16 11 C -0.10 -1.79 5.15 -26.66 -0.14 -1.93 16 12 C 0.06 0.80 5.43 -3.84 -0.02 0.78 16 13 N -0.53 -7.28 4.80 -236.11 -1.13 -8.41 16 14 C 0.13 1.36 5.85 -4.98 -0.03 1.33 16 15 C -0.16 -1.70 4.51 -35.41 -0.16 -1.86 16 16 C -0.19 -1.88 10.17 -40.84 -0.42 -2.29 16 17 C 0.09 0.87 11.27 -18.45 -0.21 0.66 16 18 N -0.46 -5.63 12.09 28.86 0.35 -5.28 16 19 S 0.25 2.83 22.21 -107.50 -2.39 0.44 16 20 C 0.05 0.74 4.77 -3.83 -0.02 0.72 16 21 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.44 7.05 -51.93 -0.37 1.08 16 27 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.07 0.95 5.54 -51.93 -0.29 0.66 16 35 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -30.53 309.90 -10.28 -40.81 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -5.65 Total: -3.61 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.84 Total: -18.95 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.05 Total: -39.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.39 Total: 0.44 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.53 -10.28 -40.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694521646.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.179 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds