Wall clock time and date at job start Mon Mar 30 2020 07:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99759 * 2 1 4 4 H 1.48499 * 109.47146 * 270.00298 * 3 2 1 5 5 H 1.48500 * 109.46739 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.47013 * 150.00014 * 3 2 1 7 7 C 1.37878 * 120.00836 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.53099 * 109.52781 * 294.67655 * 10 9 7 12 12 C 1.53034 * 109.29509 * 182.43453 * 11 10 9 13 13 N 1.46847 * 109.51345 * 59.18740 * 12 11 10 14 14 C 1.46898 * 110.99897 * 174.16738 * 13 12 11 15 15 C 1.50704 * 109.46923 * 169.99458 * 14 13 12 16 16 C 1.35141 * 127.24540 * 90.00458 * 15 14 13 17 17 C 1.37808 * 114.76075 * 179.97438 * 16 15 14 18 18 N 1.30085 * 116.87851 * 359.97438 * 17 16 15 19 19 S 1.69595 * 107.15250 * 359.73276 * 18 17 16 20 20 C 1.46854 * 111.19790 * 298.26320 * 13 12 11 21 21 C 1.53039 * 109.52227 * 61.74204 * 20 13 12 22 22 H 0.97004 * 120.00513 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47202 * 60.00010 * 9 7 2 24 24 H 1.09001 * 109.47488 * 300.00154 * 9 7 2 25 25 H 1.09002 * 109.52267 * 54.87253 * 10 9 7 26 26 H 1.09007 * 109.48839 * 62.49095 * 11 10 9 27 27 H 1.09009 * 109.50682 * 302.38881 * 11 10 9 28 28 H 1.09002 * 109.46271 * 299.17460 * 12 11 10 29 29 H 1.08994 * 109.46242 * 179.19760 * 12 11 10 30 30 H 1.08992 * 109.47195 * 289.99926 * 14 13 12 31 31 H 1.09001 * 109.47336 * 50.00240 * 14 13 12 32 32 H 1.08003 * 122.61819 * 359.97363 * 16 15 14 33 33 H 1.07994 * 121.55870 * 180.02562 * 17 16 15 34 34 H 1.08993 * 109.46229 * 181.76227 * 20 13 12 35 35 H 1.09008 * 109.45803 * 301.73838 * 20 13 12 36 36 H 1.08994 * 109.50227 * 60.75933 * 21 20 13 37 37 H 1.08998 * 109.50241 * 180.83988 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6619 -0.0015 11 6 3.0369 -3.6588 -1.3120 12 6 3.9864 -4.8588 -1.3322 13 7 3.2109 -6.1000 -1.2110 14 6 4.0751 -7.2778 -1.3653 15 6 3.3042 -8.5185 -0.9946 16 6 2.5621 -9.2957 -1.8140 17 6 1.9639 -10.3750 -1.2005 18 7 2.1783 -10.5201 0.0743 19 16 3.1909 -9.2489 0.5591 20 6 2.4795 -6.1470 0.0615 21 6 1.4851 -4.9853 0.1231 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.9308 -3.5550 0.8394 26 1 3.6138 -2.7369 -1.3862 27 1 2.3475 -3.7260 -2.1537 28 1 4.6843 -4.7837 -0.4983 29 1 4.5411 -4.8673 -2.2704 30 1 4.4068 -7.3519 -2.4009 31 1 4.9423 -7.1802 -0.7122 32 1 2.4469 -9.0873 -2.8675 33 1 1.3466 -11.0683 -1.7524 34 1 1.9400 -7.0911 0.1356 35 1 3.1845 -6.0657 0.8889 36 1 0.7715 -5.0733 -0.6959 37 1 0.9530 -5.0118 1.0740 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694521646.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:15 Heat of formation + Delta-G solvation = 9.597160 kcal Electronic energy + Delta-G solvation = -17867.493694 eV Core-core repulsion = 15155.844617 eV Total energy + Delta-G solvation = -2711.649077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42295 -39.41636 -36.43058 -34.50350 -32.55198 -31.70283 -29.83831 -27.49746 -25.77052 -24.22424 -23.86562 -22.30809 -20.77010 -20.27665 -18.72053 -18.40227 -17.16655 -16.64637 -16.47024 -15.80932 -15.33305 -15.28889 -14.84782 -14.69133 -14.33700 -14.06493 -13.86105 -13.52365 -13.36956 -13.08164 -12.90899 -12.61532 -12.42614 -12.17335 -12.08447 -11.97748 -11.63126 -11.42040 -11.27392 -10.90609 -10.74142 -10.52527 -10.48856 -9.63484 -9.26880 -8.15956 -6.25812 -0.27782 0.51677 0.93292 1.41004 1.42100 1.52807 1.58952 2.42960 2.98630 3.17416 3.49951 3.95962 4.02482 4.05623 4.14977 4.29347 4.38011 4.45781 4.55719 4.62714 4.68420 4.74381 4.82663 4.91942 4.99812 5.01050 5.06431 5.15363 5.36711 5.41075 5.48214 5.58297 5.67080 5.81135 5.89616 6.07268 6.11199 6.30879 6.90606 7.42805 8.96078 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045390 B = 0.003778 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.724033 B = 7408.581768 C = 7629.232209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.075 4.075 11 C -0.094 4.094 12 C 0.066 3.934 13 N -0.537 5.537 14 C 0.128 3.872 15 C -0.163 4.163 16 C -0.187 4.187 17 C 0.094 3.906 18 N -0.493 5.493 19 S 0.217 5.783 20 C 0.062 3.938 21 C -0.106 4.106 22 H 0.261 0.739 23 H -0.012 1.012 24 H -0.018 1.018 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.182 0.818 33 H 0.216 0.784 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.054 0.946 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.497 -19.077 -4.706 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.081 0.919 9 C -0.004 4.004 10 C -0.093 4.093 11 C -0.132 4.132 12 C -0.062 4.062 13 N -0.262 5.262 14 C -0.001 4.001 15 C -0.293 4.293 16 C -0.223 4.223 17 C -0.104 4.104 18 N -0.313 5.313 19 S 0.369 5.631 20 C -0.067 4.067 21 C -0.144 4.144 22 H 0.070 0.930 23 H 0.006 0.994 24 H 0.001 0.999 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.199 0.801 33 H 0.232 0.768 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.187 -19.534 -2.927 21.784 hybrid contribution 0.024 1.451 -0.937 1.727 sum 9.211 -18.083 -3.864 20.659 Atomic orbital electron populations 1.70107 1.07878 1.27538 1.52234 1.25967 0.95663 1.03268 0.95082 0.85509 0.78714 0.78739 0.78465 1.19747 1.21143 1.18651 1.21653 0.93458 0.91989 1.49547 0.91907 1.19008 0.94026 0.93167 0.94166 1.21089 0.96939 0.93877 0.97441 1.21422 0.97920 0.97020 0.96866 1.22115 0.94296 0.87942 1.01811 1.62109 1.28170 1.01813 1.34142 1.20653 0.92110 0.83521 1.03777 1.25492 1.03349 1.01739 0.98751 1.21659 1.00445 0.95558 1.04600 1.23437 0.98589 0.98236 0.90113 1.76838 1.18118 1.19444 1.16867 1.84255 1.46368 1.18671 1.13811 1.22147 0.96154 0.98452 0.89897 1.21580 0.97831 0.94063 1.00922 0.92987 0.99376 0.99924 0.93330 0.91998 0.93047 0.94472 0.88494 0.86200 0.92349 0.80106 0.76822 0.90795 0.94782 0.92726 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.96 44.28 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.53 -29.79 8.45 25.60 0.22 -29.57 16 8 H 0.06 3.36 7.08 -2.91 -0.02 3.34 16 9 C 0.03 1.78 4.45 29.85 0.13 1.91 16 10 C -0.07 -3.06 2.20 -10.72 -0.02 -3.09 16 11 C -0.09 -3.37 5.15 30.64 0.16 -3.21 16 12 C 0.07 1.71 5.43 86.32 0.47 2.18 16 13 N -0.54 -13.44 4.80 -900.93 -4.32 -17.77 16 14 C 0.13 2.35 5.85 85.56 0.50 2.85 16 15 C -0.16 -3.13 4.51 24.97 0.11 -3.01 16 16 C -0.19 -3.06 10.17 21.45 0.22 -2.84 16 17 C 0.09 1.58 11.27 84.85 0.96 2.54 16 18 N -0.49 -11.24 12.09 -62.61 -0.76 -11.99 16 19 S 0.22 4.72 22.21 -56.49 -1.25 3.46 16 20 C 0.06 1.75 4.77 86.32 0.41 2.16 16 21 C -0.11 -3.76 5.38 30.65 0.16 -3.60 16 22 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 23 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 24 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 2.35 7.05 -2.38 -0.02 2.33 16 27 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.10 2.05 8.12 -2.39 -0.02 2.03 16 30 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.18 2.10 8.06 -2.91 -0.02 2.07 16 33 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 34 H 0.07 2.01 5.54 -2.39 -0.01 2.00 16 35 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.28 309.90 0.79 -66.48 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.04 Total: 4.34 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.78 Total: -33.38 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -4.80 Total: -87.21 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.25 Total: 3.46 kcal Total: -67.28 0.79 -66.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694521646.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.081 kcal (2) G-P(sol) polarization free energy of solvation -67.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds