Wall clock time and date at job start Mon Mar 30 2020 07:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47327 * 239.99530 * 2 1 3 5 5 C 1.50701 * 109.47289 * 175.00302 * 4 2 1 6 6 H 1.08000 * 119.99363 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99658 * 9 7 5 11 11 H 1.48503 * 109.46978 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47060 * 299.99704 * 9 7 5 13 13 S 1.81408 * 109.46641 * 120.00001 * 2 1 3 14 14 C 1.76202 * 102.99744 * 290.10630 * 13 2 1 15 15 C 1.38975 * 120.08475 * 353.79866 * 14 13 2 16 16 C 1.38072 * 119.92399 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.07834 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.91719 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.47535 * 25.00299 * 18 17 16 20 20 C 1.53006 * 109.47061 * 264.99920 * 18 17 16 21 21 O 1.42902 * 109.46688 * 145.00257 * 18 17 16 22 22 C 1.38304 * 120.16142 * 0.02562 * 17 16 15 23 23 C 1.38076 * 120.07927 * 359.97438 * 22 17 16 24 24 H 1.09004 * 109.47614 * 294.60247 * 1 2 3 25 25 H 1.09007 * 109.46895 * 54.59443 * 1 2 3 26 26 H 1.08998 * 109.47749 * 174.59612 * 1 2 3 27 27 H 1.08998 * 109.47388 * 295.00476 * 4 2 1 28 28 H 1.09000 * 109.46575 * 55.00235 * 4 2 1 29 29 H 0.96995 * 119.99956 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.03652 * 0.02562 * 15 14 13 31 31 H 1.08004 * 119.96394 * 180.27851 * 16 15 14 32 32 H 1.08997 * 109.46658 * 60.00348 * 20 18 17 33 33 H 1.08998 * 109.46581 * 180.02562 * 20 18 17 34 34 H 1.08992 * 109.47425 * 300.00188 * 20 18 17 35 35 H 0.96695 * 114.00293 * 60.00114 * 21 18 17 36 36 H 1.07994 * 119.95527 * 180.02562 * 22 17 16 37 37 H 1.08004 * 120.04188 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0863 -0.5390 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8372 -3.2998 9 14 6.0921 -1.0617 -2.4363 10 1 6.6838 -1.6886 -1.2271 11 1 6.5871 -1.7618 -3.6488 12 1 6.4855 0.3690 -2.4949 13 16 2.1345 -0.8552 1.4812 14 6 1.7101 0.2559 2.7813 15 6 1.1820 1.5066 2.4842 16 6 0.8501 2.3744 3.5055 17 6 1.0432 2.0005 4.8230 18 6 0.6802 2.9508 5.9349 19 1 -0.0874 3.6418 5.5863 20 6 1.9217 3.7387 6.3580 21 8 0.1828 2.2100 7.0511 22 6 1.5695 0.7571 5.1225 23 6 1.9037 -0.1159 4.1063 24 1 -0.3634 0.4278 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 -0.3634 -1.0230 -0.0968 27 1 1.7516 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1368 29 1 4.0607 -2.2434 -4.0355 30 1 1.0306 1.7990 1.4556 31 1 0.4354 3.3448 3.2755 32 1 2.3010 4.3037 5.5066 33 1 1.6591 4.4257 7.1625 34 1 2.6892 3.0478 6.7066 35 1 0.8144 1.5741 7.4141 36 1 1.7185 0.4684 6.1524 37 1 2.3143 -1.0869 4.3409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:18 Heat of formation + Delta-G solvation = -48.330684 kcal Electronic energy + Delta-G solvation = -17396.858880 eV Core-core repulsion = 14650.405112 eV Total energy + Delta-G solvation = -2746.453768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55564 -37.02291 -34.74174 -32.34199 -32.02877 -30.74534 -29.32338 -27.50036 -24.07416 -23.38338 -22.79582 -21.13149 -20.49193 -17.84777 -16.72310 -16.39990 -15.92546 -15.41401 -14.91340 -14.59936 -14.19053 -14.17781 -13.48886 -13.46139 -12.97804 -12.69548 -12.65721 -12.26906 -12.13141 -11.84619 -11.62249 -11.31527 -11.01462 -10.93501 -10.85761 -10.57380 -10.53233 -10.16138 -9.56965 -9.44373 -9.25336 -9.14162 -8.86754 -8.41155 -6.80697 -6.06271 -4.08319 1.31084 1.48224 2.15889 3.14042 3.32400 3.36302 3.39912 3.72965 4.24760 4.42757 4.55349 4.79416 4.92729 5.03884 5.07143 5.31038 5.41676 5.45610 5.54790 5.56594 5.65613 5.78403 5.82480 5.89515 5.91444 6.07973 6.26611 6.36586 6.48643 6.52527 6.56243 6.64172 6.99586 7.38381 7.44450 7.52418 7.90446 8.26950 8.95937 9.55918 11.04973 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.004155 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.274257 B = 6737.046566 C = 7092.929420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 H 0.082 0.918 4 C 0.040 3.960 5 C -0.520 4.520 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S -0.086 6.086 14 C -0.077 4.077 15 C -0.136 4.136 16 C -0.091 4.091 17 C -0.142 4.142 18 C 0.148 3.852 19 H 0.104 0.896 20 C -0.180 4.180 21 O -0.560 6.560 22 C -0.095 4.095 23 C -0.108 4.108 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.129 0.871 31 H 0.120 0.880 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.373 0.627 36 H 0.118 0.882 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.386 8.035 16.274 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 H 0.100 0.900 4 C 0.002 3.998 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.163 5.837 14 C -0.191 4.191 15 C -0.161 4.161 16 C -0.111 4.111 17 C -0.146 4.146 18 C 0.089 3.911 19 H 0.121 0.879 20 C -0.237 4.237 21 O -0.366 6.366 22 C -0.115 4.115 23 C -0.132 4.132 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.138 0.862 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.221 0.779 36 H 0.136 0.864 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.299 7.135 15.877 18.195 hybrid contribution 1.010 0.935 -0.242 1.397 sum -4.289 8.069 15.635 18.110 Atomic orbital electron populations 1.22182 0.94708 1.02760 1.01166 1.23721 0.96726 1.02199 0.96676 0.90012 1.19028 0.96555 0.95612 0.88643 1.21190 0.91443 1.34940 1.08309 0.91972 1.24976 0.98527 0.95099 0.95541 1.69941 1.35784 1.35712 1.12035 0.86634 0.85583 0.78273 0.77462 1.20023 1.21305 1.20224 1.85952 1.73227 1.27297 0.97179 1.22331 1.00322 0.98095 0.98312 1.21304 1.01481 0.93412 0.99860 1.20794 0.99462 0.99061 0.91813 1.20378 1.02826 0.96329 0.95062 1.20732 0.95853 0.90804 0.83701 0.87852 1.22488 0.98022 1.00963 1.02254 1.86598 1.45173 1.56765 1.48086 1.20640 0.98906 0.93495 0.98484 1.20707 1.01854 0.99953 0.90708 0.93163 0.91970 0.91795 0.95472 0.94581 0.92827 0.85326 0.86191 0.91292 0.91731 0.92147 0.77891 0.86435 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.71 37.16 0.32 -2.16 16 2 C -0.06 -1.29 1.98 -26.73 -0.05 -1.34 16 3 H 0.08 1.61 6.84 -51.92 -0.36 1.26 16 4 C 0.04 0.99 4.45 -27.88 -0.12 0.86 16 5 C -0.52 -14.24 8.53 -34.44 -0.29 -14.54 16 6 H 0.06 1.69 7.60 -52.49 -0.40 1.29 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 S -0.09 -1.67 20.62 -107.50 -2.22 -3.88 16 14 C -0.08 -1.27 5.97 -39.03 -0.23 -1.50 16 15 C -0.14 -2.06 8.03 -39.37 -0.32 -2.37 16 16 C -0.09 -1.17 9.67 -39.62 -0.38 -1.55 16 17 C -0.14 -1.68 5.01 -104.57 -0.52 -2.21 16 18 C 0.15 1.44 3.83 -27.88 -0.11 1.33 16 19 H 0.10 0.95 8.05 -51.93 -0.42 0.54 16 20 C -0.18 -1.47 9.52 37.16 0.35 -1.11 16 21 O -0.56 -5.68 13.13 -35.23 -0.46 -6.14 16 22 C -0.10 -1.15 9.32 -39.62 -0.37 -1.52 16 23 C -0.11 -1.55 9.79 -39.37 -0.39 -1.94 16 24 H 0.05 0.76 6.11 -51.93 -0.32 0.44 16 25 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 1.94 5.00 -52.49 -0.26 1.68 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.37 2.58 7.38 45.56 0.34 2.92 16 36 H 0.12 1.05 6.60 -52.49 -0.35 0.70 16 37 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 317.18 15.07 4.78 4.78 Total: -1.00 -30.36 317.18 -9.09 -39.46 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.70 Total: 1.32 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -2.21 Total: -26.46 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.46 Total: -6.14 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.22 Total: -3.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.36 -9.09 -39.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.875 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds