Wall clock time and date at job start Mon Mar 30 2020 07:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47222 * 2 1 4 4 C 1.52996 * 109.47327 * 239.99530 * 2 1 3 5 5 C 1.50701 * 109.47289 * 175.00302 * 4 2 1 6 6 H 1.08000 * 119.99363 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00108 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47320 * 59.99658 * 9 7 5 11 11 H 1.48503 * 109.46978 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47060 * 299.99704 * 9 7 5 13 13 S 1.81408 * 109.46641 * 120.00001 * 2 1 3 14 14 C 1.76202 * 102.99744 * 290.10630 * 13 2 1 15 15 C 1.38975 * 120.08475 * 353.79866 * 14 13 2 16 16 C 1.38072 * 119.92399 * 179.97438 * 15 14 13 17 17 C 1.38308 * 120.07834 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.91719 * 179.97438 * 17 16 15 19 19 H 1.08999 * 109.47535 * 25.00299 * 18 17 16 20 20 C 1.53006 * 109.47061 * 264.99920 * 18 17 16 21 21 O 1.42902 * 109.46688 * 145.00257 * 18 17 16 22 22 C 1.38304 * 120.16142 * 0.02562 * 17 16 15 23 23 C 1.38076 * 120.07927 * 359.97438 * 22 17 16 24 24 H 1.09004 * 109.47614 * 294.60247 * 1 2 3 25 25 H 1.09007 * 109.46895 * 54.59443 * 1 2 3 26 26 H 1.08998 * 109.47749 * 174.59612 * 1 2 3 27 27 H 1.08998 * 109.47388 * 295.00476 * 4 2 1 28 28 H 1.09000 * 109.46575 * 55.00235 * 4 2 1 29 29 H 0.96995 * 119.99956 * 179.97438 * 8 7 5 30 30 H 1.08000 * 120.03652 * 0.02562 * 15 14 13 31 31 H 1.08004 * 119.96394 * 180.27851 * 16 15 14 32 32 H 1.08997 * 109.46658 * 60.00348 * 20 18 17 33 33 H 1.08998 * 109.46581 * 180.02562 * 20 18 17 34 34 H 1.08992 * 109.47425 * 300.00188 * 20 18 17 35 35 H 0.96695 * 114.00293 * 60.00114 * 21 18 17 36 36 H 1.07994 * 119.95527 * 180.02562 * 22 17 16 37 37 H 1.08004 * 120.04188 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0863 -0.5390 7 6 4.2304 -1.1928 -2.3581 8 7 3.5764 -1.8372 -3.2998 9 14 6.0921 -1.0617 -2.4363 10 1 6.6838 -1.6886 -1.2271 11 1 6.5871 -1.7618 -3.6488 12 1 6.4855 0.3690 -2.4949 13 16 2.1345 -0.8552 1.4812 14 6 1.7101 0.2559 2.7813 15 6 1.1820 1.5066 2.4842 16 6 0.8501 2.3744 3.5055 17 6 1.0432 2.0005 4.8230 18 6 0.6802 2.9508 5.9349 19 1 -0.0874 3.6418 5.5863 20 6 1.9217 3.7387 6.3580 21 8 0.1828 2.2100 7.0511 22 6 1.5695 0.7571 5.1225 23 6 1.9037 -0.1159 4.1063 24 1 -0.3634 0.4278 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 -0.3634 -1.0230 -0.0968 27 1 1.7516 -1.7716 -1.2055 28 1 1.6054 -0.2618 -2.1368 29 1 4.0607 -2.2434 -4.0355 30 1 1.0306 1.7990 1.4556 31 1 0.4354 3.3448 3.2755 32 1 2.3010 4.3037 5.5066 33 1 1.6591 4.4257 7.1625 34 1 2.6892 3.0478 6.7066 35 1 0.8144 1.5741 7.4141 36 1 1.7185 0.4684 6.1524 37 1 2.3143 -1.0869 4.3409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:18 Heat of formation + Delta-G solvation = -66.005716 kcal Electronic energy + Delta-G solvation = -17397.625326 eV Core-core repulsion = 14650.405112 eV Total energy + Delta-G solvation = -2747.220215 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52415 -37.88475 -36.53452 -34.19844 -33.01446 -31.85801 -30.21702 -29.32256 -25.29914 -24.94192 -23.93573 -22.16686 -22.01147 -18.87228 -18.51431 -17.85712 -16.91540 -16.71721 -16.45770 -15.98485 -15.27738 -15.12855 -14.74107 -14.56334 -14.36993 -14.02639 -13.91921 -13.53568 -13.41592 -13.22455 -12.84460 -12.72434 -12.60095 -12.40801 -12.30498 -12.02401 -11.80683 -11.51225 -11.27403 -11.11007 -10.81356 -10.53926 -10.39386 -9.92143 -8.24054 -8.21384 -6.30049 0.23222 0.42727 0.73448 1.38925 1.41552 1.49192 1.70042 2.40232 2.69290 3.13501 3.56731 3.69882 3.86234 3.98424 4.03473 4.13701 4.26602 4.30681 4.41122 4.47213 4.59810 4.76328 4.82385 4.88228 4.93037 4.98860 5.10273 5.14052 5.25622 5.34126 5.35737 5.40188 5.47199 5.59735 5.75240 5.96842 6.16383 6.80353 6.81447 7.37802 8.90123 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.004155 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.274257 B = 6737.046566 C = 7092.929420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.051 4.051 3 H 0.081 0.919 4 C 0.046 3.954 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.267 1.267 13 S -0.141 6.141 14 C -0.093 4.093 15 C -0.147 4.147 16 C -0.094 4.094 17 C -0.132 4.132 18 C 0.152 3.848 19 H 0.111 0.889 20 C -0.176 4.176 21 O -0.572 6.572 22 C -0.092 4.092 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.057 0.943 27 H -0.001 1.001 28 H 0.017 0.983 29 H 0.264 0.736 30 H 0.124 0.876 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.387 0.613 36 H 0.153 0.847 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.268 9.792 18.712 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 H 0.099 0.901 4 C 0.008 3.992 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.191 1.191 13 S 0.105 5.895 14 C -0.206 4.206 15 C -0.171 4.171 16 C -0.114 4.114 17 C -0.135 4.135 18 C 0.093 3.907 19 H 0.129 0.871 20 C -0.233 4.233 21 O -0.380 6.380 22 C -0.112 4.112 23 C -0.140 4.140 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.017 0.983 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.170 0.830 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.186 8.912 18.344 21.044 hybrid contribution 0.916 0.451 -0.830 1.316 sum -4.270 9.362 17.514 20.313 Atomic orbital electron populations 1.22091 0.92249 1.02828 1.02625 1.23418 0.98644 1.01094 0.94791 0.90051 1.18818 0.95545 0.94307 0.90509 1.21520 0.92865 1.34435 1.08043 0.92128 1.25835 1.03299 0.94835 0.95261 1.70063 1.37599 1.36814 1.12741 0.85614 0.79923 0.78706 0.77553 1.19603 1.20769 1.19147 1.85923 1.75131 1.29479 0.98921 1.22166 1.02881 0.98046 0.97534 1.21373 1.01924 0.93391 1.00428 1.21105 0.98883 0.99708 0.91660 1.20784 1.00735 0.96487 0.95509 1.20776 0.96766 0.90331 0.82858 0.87127 1.22448 0.97261 1.01012 1.02609 1.86588 1.46145 1.57318 1.47973 1.21016 0.97596 0.92995 0.99582 1.20906 1.01923 1.00789 0.90397 0.91340 0.90750 0.92388 0.98299 0.96492 0.92749 0.85866 0.83590 0.91310 0.90648 0.91783 0.76305 0.82953 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 8.71 71.98 0.63 -4.03 16 2 C -0.05 -2.08 1.98 30.59 0.06 -2.02 16 3 H 0.08 3.28 6.84 -2.39 -0.02 3.26 16 4 C 0.05 2.39 4.45 29.85 0.13 2.53 16 5 C -0.53 -29.83 8.53 25.60 0.22 -29.61 16 6 H 0.06 3.36 7.60 -2.91 -0.02 3.33 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 9 Si 0.96 44.68 29.54 68.60 2.03 46.70 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 S -0.14 -5.65 20.62 -56.49 -1.16 -6.82 16 14 C -0.09 -3.02 5.97 22.62 0.14 -2.89 16 15 C -0.15 -4.27 8.03 22.41 0.18 -4.09 16 16 C -0.09 -2.15 9.67 22.25 0.22 -1.93 16 17 C -0.13 -2.68 5.01 -19.83 -0.10 -2.78 16 18 C 0.15 2.36 3.83 29.85 0.11 2.48 16 19 H 0.11 1.60 8.05 -2.39 -0.02 1.59 16 20 C -0.18 -2.21 9.52 71.98 0.69 -1.53 16 21 O -0.57 -9.40 13.13 -148.98 -1.96 -11.36 16 22 C -0.09 -1.94 9.32 22.25 0.21 -1.73 16 23 C -0.12 -3.18 9.79 22.41 0.22 -2.96 16 24 H 0.07 2.04 6.11 -2.38 -0.01 2.02 16 25 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.12 3.64 5.00 -2.91 -0.01 3.62 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.39 3.76 7.38 -74.06 -0.55 3.21 16 36 H 0.15 2.07 6.60 -2.91 -0.02 2.05 16 37 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -66.49 317.18 2.86 -63.63 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.51 Total: 11.61 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 3.16 Total: -47.79 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.96 Total: -11.36 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.16 Total: -6.82 kcal Total: -66.49 2.86 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.377 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds