Wall clock time and date at job start Mon Mar 30 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 O 1.42898 * 109.46749 * 239.99982 * 2 1 3 5 5 C 1.50700 * 109.46818 * 120.00079 * 2 1 3 6 6 C 1.38301 * 119.91778 * 264.99555 * 5 2 1 7 7 C 1.38086 * 120.07799 * 179.97438 * 6 5 2 8 8 C 1.38976 * 119.92259 * 0.02562 * 7 6 5 9 9 S 1.76193 * 120.07997 * 180.02562 * 8 7 6 10 10 C 1.81405 * 102.99808 * 85.75929 * 9 8 7 11 11 H 1.08997 * 109.46655 * 307.50100 * 10 9 8 12 12 C 1.52996 * 109.47298 * 67.50400 * 10 9 8 13 13 C 1.53006 * 109.46947 * 187.50317 * 10 9 8 14 14 C 1.50703 * 109.47196 * 64.99515 * 13 10 9 15 15 H 1.08005 * 119.99576 * 0.02562 * 14 13 10 16 16 C 1.37868 * 119.99938 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00248 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00231 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47086 * 89.99861 * 18 16 14 20 20 H 1.48499 * 109.47334 * 210.00196 * 18 16 14 21 21 H 1.48507 * 109.47133 * 330.00247 * 18 16 14 22 22 C 1.38975 * 119.83478 * 0.27891 * 8 7 6 23 23 C 1.38081 * 119.92029 * 359.39809 * 22 8 7 24 24 H 1.09000 * 109.47096 * 59.99789 * 1 2 3 25 25 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46635 * 300.00233 * 1 2 3 27 27 H 0.96692 * 114.00306 * 60.00320 * 4 2 1 28 28 H 1.07998 * 119.96130 * 0.02562 * 6 5 2 29 29 H 1.08003 * 120.03805 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47601 * 54.77727 * 12 10 9 31 31 H 1.08998 * 109.47059 * 174.77778 * 12 10 9 32 32 H 1.09003 * 109.46837 * 294.77775 * 12 10 9 33 33 H 1.08993 * 109.46762 * 184.99835 * 13 10 9 34 34 H 1.09003 * 109.46953 * 305.00243 * 13 10 9 35 35 H 0.96992 * 120.00361 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.03891 * 179.72840 * 22 8 7 37 37 H 1.08006 * 119.96098 * 180.32013 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.3608 0.0160 2.3606 7 6 2.8208 -0.6317 3.4901 8 6 2.9541 -2.0150 3.4901 9 16 3.5400 -2.8457 4.9293 10 6 2.0303 -3.0829 5.9066 11 1 1.5174 -2.1279 6.0203 12 6 1.1101 -4.0740 5.1912 13 6 2.3972 -3.6324 7.2866 14 6 3.2019 -2.6041 8.0391 15 1 3.4285 -1.6535 7.5791 16 6 3.6487 -2.8768 9.3145 17 7 4.3506 -1.9792 9.9714 18 14 3.2573 -4.5211 10.1097 19 1 4.3340 -5.4933 9.7922 20 1 3.1638 -4.3493 11.5818 21 1 1.9629 -5.0280 9.5873 22 6 2.6290 -2.7410 2.3505 23 6 2.1633 -2.0873 1.2270 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7210 -0.2702 -1.9979 28 1 2.2566 1.0909 2.3600 29 1 3.0775 -0.0637 4.3721 30 1 1.6539 -4.9980 4.9947 31 1 0.2465 -4.2877 5.8210 32 1 0.7743 -3.6425 4.2483 33 1 1.4867 -3.8584 7.8415 34 1 2.9872 -4.5415 7.1706 35 1 4.6652 -2.1712 10.8686 36 1 2.7355 -3.8157 2.3455 37 1 1.9056 -2.6513 0.3427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:21 Heat of formation + Delta-G solvation = -42.286725 kcal Electronic energy + Delta-G solvation = -17374.144556 eV Core-core repulsion = 14627.952874 eV Total energy + Delta-G solvation = -2746.191682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45759 -37.11040 -34.62966 -32.38224 -32.00248 -30.87537 -29.29498 -27.95639 -24.10894 -23.13336 -22.58342 -21.05680 -20.34022 -17.46657 -17.28006 -16.69626 -15.90172 -15.22040 -14.99507 -14.42946 -14.34848 -14.17308 -13.34454 -13.30150 -13.08959 -12.80332 -12.67332 -12.46664 -12.17892 -12.09136 -11.75457 -11.38646 -11.06249 -10.99474 -10.79142 -10.44446 -10.34132 -9.91266 -9.72711 -9.51417 -9.24005 -8.83686 -8.52990 -8.31078 -6.96341 -6.00365 -3.98108 1.10306 1.50886 2.38312 3.29449 3.32601 3.39776 3.41522 3.82633 3.99939 4.46915 4.57862 4.77237 4.87595 5.04962 5.13496 5.33264 5.37895 5.40565 5.56080 5.56659 5.67558 5.71972 5.83119 5.85249 5.93199 6.13231 6.29228 6.34964 6.44895 6.54886 6.55860 6.59424 6.98312 7.06037 7.21593 7.35244 7.74738 8.55592 9.07146 9.60613 11.12597 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041208 B = 0.004012 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.315497 B = 6977.959558 C = 7199.649821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.143 3.857 3 H 0.064 0.936 4 O -0.562 6.562 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.074 4.074 8 C -0.108 4.108 9 S -0.132 6.132 10 C -0.044 4.044 11 H 0.079 0.921 12 C -0.146 4.146 13 C 0.003 3.997 14 C -0.515 4.515 15 H 0.082 0.918 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.874 3.126 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.080 4.080 23 C -0.105 4.105 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.378 0.622 28 H 0.123 0.877 29 H 0.134 0.866 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.128 0.872 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 2.530 -20.136 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.084 3.916 3 H 0.082 0.918 4 O -0.368 6.368 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.095 4.095 8 C -0.219 4.219 9 S 0.102 5.898 10 C -0.172 4.172 11 H 0.098 0.902 12 C -0.206 4.206 13 C -0.035 4.035 14 C -0.553 4.553 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.701 3.299 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.101 4.101 23 C -0.125 4.125 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.225 0.775 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.723 1.846 -19.196 20.423 hybrid contribution -1.638 0.021 -0.186 1.649 sum -8.361 1.868 -19.382 21.191 Atomic orbital electron populations 1.22492 0.95506 1.03233 1.02573 1.20547 0.92796 0.94353 0.83886 0.91812 1.86564 1.76996 1.57558 1.15692 1.19631 0.99905 0.94215 0.93945 1.20928 1.00627 0.99614 0.92953 1.21664 0.95980 0.93725 0.98127 1.22213 1.04020 0.96329 0.99348 1.85971 1.16442 1.75170 1.12256 1.23324 0.94008 1.01444 0.98403 0.90213 1.22163 0.99390 0.99549 0.99460 1.19498 0.97385 0.97290 0.89371 1.21133 1.32543 1.02435 0.99230 0.90026 1.24973 0.94693 0.96460 0.97087 1.69903 1.36990 1.34478 1.12553 0.86877 0.79419 0.85042 0.78560 1.20223 1.21382 1.19120 1.21645 0.96225 1.00020 0.92213 1.20945 0.99719 0.93847 0.97945 0.92112 0.91543 0.91233 0.77516 0.85906 0.84776 0.91965 0.92246 0.93546 0.95006 0.96117 0.92782 0.85368 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.52 37.16 0.35 -1.03 16 2 C 0.14 1.33 3.79 -27.88 -0.11 1.22 16 3 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 4 O -0.56 -5.21 12.46 -35.23 -0.44 -5.65 16 5 C -0.08 -0.95 5.01 -104.57 -0.52 -1.47 16 6 C -0.12 -1.57 9.67 -39.61 -0.38 -1.95 16 7 C -0.07 -1.16 9.79 -39.36 -0.39 -1.54 16 8 C -0.11 -1.82 5.32 -39.03 -0.21 -2.03 16 9 S -0.13 -2.65 20.40 -107.50 -2.19 -4.84 16 10 C -0.04 -0.88 2.73 -26.73 -0.07 -0.95 16 11 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 12 C -0.15 -2.41 9.06 37.16 0.34 -2.07 16 13 C 0.00 0.07 3.51 -27.88 -0.10 -0.03 16 14 C -0.52 -14.52 9.09 -34.44 -0.31 -14.83 16 15 H 0.08 2.49 7.85 -52.48 -0.41 2.08 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 18 Si 0.87 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 22 C -0.08 -1.19 9.38 -39.37 -0.37 -1.56 16 23 C -0.10 -1.39 9.34 -39.61 -0.37 -1.76 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.38 1.69 9.08 45.56 0.41 2.10 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.70 7.47 -51.93 -0.39 0.31 16 33 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 34 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.13 1.51 7.62 -52.48 -0.40 1.11 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -32.16 322.89 -8.84 -41.00 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.94 Total: 0.75 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -2.24 Total: -26.09 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.02 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.44 Total: -5.65 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.19 Total: -4.84 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.16 -8.84 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.288 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds