Wall clock time and date at job start Mon Mar 30 2020 07:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47217 * 2 1 4 4 O 1.42898 * 109.46749 * 239.99982 * 2 1 3 5 5 C 1.50700 * 109.46818 * 120.00079 * 2 1 3 6 6 C 1.38301 * 119.91778 * 264.99555 * 5 2 1 7 7 C 1.38086 * 120.07799 * 179.97438 * 6 5 2 8 8 C 1.38976 * 119.92259 * 0.02562 * 7 6 5 9 9 S 1.76193 * 120.07997 * 180.02562 * 8 7 6 10 10 C 1.81405 * 102.99808 * 85.75929 * 9 8 7 11 11 H 1.08997 * 109.46655 * 307.50100 * 10 9 8 12 12 C 1.52996 * 109.47298 * 67.50400 * 10 9 8 13 13 C 1.53006 * 109.46947 * 187.50317 * 10 9 8 14 14 C 1.50703 * 109.47196 * 64.99515 * 13 10 9 15 15 H 1.08005 * 119.99576 * 0.02562 * 14 13 10 16 16 C 1.37868 * 119.99938 * 180.02562 * 14 13 10 17 17 N 1.31519 * 120.00248 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00231 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47086 * 89.99861 * 18 16 14 20 20 H 1.48499 * 109.47334 * 210.00196 * 18 16 14 21 21 H 1.48507 * 109.47133 * 330.00247 * 18 16 14 22 22 C 1.38975 * 119.83478 * 0.27891 * 8 7 6 23 23 C 1.38081 * 119.92029 * 359.39809 * 22 8 7 24 24 H 1.09000 * 109.47096 * 59.99789 * 1 2 3 25 25 H 1.08998 * 109.47217 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46635 * 300.00233 * 1 2 3 27 27 H 0.96692 * 114.00306 * 60.00320 * 4 2 1 28 28 H 1.07998 * 119.96130 * 0.02562 * 6 5 2 29 29 H 1.08003 * 120.03805 * 179.97438 * 7 6 5 30 30 H 1.08997 * 109.47601 * 54.77727 * 12 10 9 31 31 H 1.08998 * 109.47059 * 174.77778 * 12 10 9 32 32 H 1.09003 * 109.46837 * 294.77775 * 12 10 9 33 33 H 1.08993 * 109.46762 * 184.99835 * 13 10 9 34 34 H 1.09003 * 109.46953 * 305.00243 * 13 10 9 35 35 H 0.96992 * 120.00361 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.03891 * 179.72840 * 22 8 7 37 37 H 1.08006 * 119.96098 * 180.32013 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 2.3608 0.0160 2.3606 7 6 2.8208 -0.6317 3.4901 8 6 2.9541 -2.0150 3.4901 9 16 3.5400 -2.8457 4.9293 10 6 2.0303 -3.0829 5.9066 11 1 1.5174 -2.1279 6.0203 12 6 1.1101 -4.0740 5.1912 13 6 2.3972 -3.6324 7.2866 14 6 3.2019 -2.6041 8.0391 15 1 3.4285 -1.6535 7.5791 16 6 3.6487 -2.8768 9.3145 17 7 4.3506 -1.9792 9.9714 18 14 3.2573 -4.5211 10.1097 19 1 4.3340 -5.4933 9.7922 20 1 3.1638 -4.3493 11.5818 21 1 1.9629 -5.0280 9.5873 22 6 2.6290 -2.7410 2.3505 23 6 2.1633 -2.0873 1.2270 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7210 -0.2702 -1.9979 28 1 2.2566 1.0909 2.3600 29 1 3.0775 -0.0637 4.3721 30 1 1.6539 -4.9980 4.9947 31 1 0.2465 -4.2877 5.8210 32 1 0.7743 -3.6425 4.2483 33 1 1.4867 -3.8584 7.8415 34 1 2.9872 -4.5415 7.1706 35 1 4.6652 -2.1712 10.8686 36 1 2.7355 -3.8157 2.3455 37 1 1.9056 -2.6513 0.3427 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:20 Heat of formation + Delta-G solvation = -62.379406 kcal Electronic energy + Delta-G solvation = -17375.015840 eV Core-core repulsion = 14627.952874 eV Total energy + Delta-G solvation = -2747.062966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45373 -37.89359 -36.42902 -34.13872 -33.19355 -31.97895 -30.24709 -29.69498 -25.00323 -24.94647 -23.71535 -22.33004 -21.75532 -18.88909 -18.54542 -18.11849 -17.03923 -16.55331 -16.36034 -15.98903 -15.30018 -15.19051 -14.95519 -14.43452 -14.37226 -14.16048 -14.10805 -13.63368 -13.48085 -13.37745 -12.92623 -12.69584 -12.60302 -12.20892 -12.10402 -11.84403 -11.69650 -11.51115 -11.40052 -11.17325 -10.88567 -10.72761 -9.94702 -9.55720 -8.55572 -8.23299 -6.26858 -0.05861 0.39765 0.96909 1.37093 1.37915 1.48704 1.88299 2.37989 2.70054 3.11120 3.28217 3.81470 3.93294 4.01462 4.03673 4.19635 4.19830 4.30085 4.45841 4.50189 4.54730 4.73413 4.85686 4.87258 4.89278 4.92059 5.05800 5.06686 5.19840 5.25939 5.28822 5.35884 5.42796 5.54404 5.63303 5.90115 6.32150 6.79613 6.92942 7.35121 8.92488 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041208 B = 0.004012 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.315497 B = 6977.959558 C = 7199.649821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.145 3.855 3 H 0.082 0.918 4 O -0.580 6.580 5 C -0.072 4.072 6 C -0.116 4.116 7 C -0.093 4.093 8 C -0.120 4.120 9 S -0.189 6.189 10 C -0.037 4.037 11 H 0.065 0.935 12 C -0.135 4.135 13 C 0.006 3.994 14 C -0.518 4.518 15 H 0.040 0.960 16 C 0.005 3.995 17 N -0.951 5.951 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.242 1.242 22 C -0.082 4.082 23 C -0.105 4.105 24 H 0.086 0.914 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.399 0.601 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.136 0.864 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 1.748 -22.439 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.086 3.914 3 H 0.100 0.900 4 O -0.389 6.389 5 C -0.072 4.072 6 C -0.136 4.136 7 C -0.114 4.114 8 C -0.232 4.232 9 S 0.045 5.955 10 C -0.165 4.165 11 H 0.083 0.917 12 C -0.194 4.194 13 C -0.032 4.032 14 C -0.556 4.556 15 H 0.058 0.942 16 C -0.191 4.191 17 N -0.592 5.592 18 Si 0.767 3.233 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.165 1.165 22 C -0.103 4.103 23 C -0.124 4.124 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.250 0.750 28 H 0.169 0.831 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.671 1.065 -21.529 23.234 hybrid contribution -1.020 0.422 0.356 1.160 sum -9.691 1.487 -21.173 23.333 Atomic orbital electron populations 1.22454 0.94089 1.02993 1.03809 1.20564 0.93689 0.94485 0.82641 0.90010 1.86501 1.77380 1.58272 1.16738 1.20100 0.97921 0.94142 0.95084 1.21166 0.99398 1.01046 0.91988 1.21655 0.97316 0.93443 0.98947 1.21970 1.06499 0.96586 0.98109 1.86000 1.18227 1.76136 1.15152 1.23179 0.94399 1.01676 0.97222 0.91672 1.22056 0.98890 0.98623 0.99839 1.19412 0.96824 0.95928 0.91026 1.21376 1.32667 1.02004 0.99542 0.94185 1.25932 0.94610 1.00723 0.97855 1.70066 1.38867 1.37092 1.13167 0.85757 0.80308 0.79779 0.77432 1.19692 1.21035 1.16529 1.21707 0.96190 1.00456 0.91935 1.21155 0.99049 0.94508 0.97717 0.89546 0.92508 0.91406 0.74990 0.83112 0.86327 0.91250 0.90748 0.92165 0.94019 0.95967 0.92685 0.84646 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.52 71.98 0.69 -1.38 16 2 C 0.14 2.17 3.79 29.85 0.11 2.29 16 3 H 0.08 0.97 8.05 -2.39 -0.02 0.96 16 4 O -0.58 -8.69 12.46 -148.98 -1.86 -10.54 16 5 C -0.07 -1.61 5.01 -19.83 -0.10 -1.71 16 6 C -0.12 -2.82 9.67 22.25 0.22 -2.61 16 7 C -0.09 -2.94 9.79 22.41 0.22 -2.72 16 8 C -0.12 -4.09 5.32 22.62 0.12 -3.97 16 9 S -0.19 -7.84 20.40 -56.49 -1.15 -8.99 16 10 C -0.04 -1.50 2.73 30.59 0.08 -1.41 16 11 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 12 C -0.14 -4.22 9.06 71.98 0.65 -3.56 16 13 C 0.01 0.30 3.51 29.85 0.10 0.41 16 14 C -0.52 -30.17 9.09 25.60 0.23 -29.94 16 15 H 0.04 2.59 7.85 -2.91 -0.02 2.57 16 16 C 0.01 0.31 5.47 84.65 0.46 0.77 16 17 N -0.95 -60.79 13.96 21.44 0.30 -60.49 16 18 Si 0.94 44.75 27.47 68.60 1.88 46.63 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 22 C -0.08 -2.35 9.38 22.41 0.21 -2.14 16 23 C -0.10 -2.55 9.34 22.25 0.21 -2.35 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.40 2.05 9.08 -74.06 -0.67 1.38 16 28 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.06 1.71 7.47 -2.39 -0.02 1.69 16 33 H 0.04 1.89 7.20 -2.39 -0.02 1.87 16 34 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 35 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.14 3.01 7.62 -2.91 -0.02 2.99 16 Total: -1.00 -71.84 322.89 2.70 -69.14 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.32 Total: 12.57 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.21 Total: -48.32 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.30 Total: -60.49 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -1.86 Total: -10.54 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.15 Total: -8.99 kcal Total: -71.84 2.70 -69.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.762 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds