Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 N 1.46500 * 109.46959 * 119.99432 * 2 1 3 14 14 C 1.36077 * 126.35223 * 60.03174 * 13 2 1 15 15 N 1.30091 * 110.09068 * 179.97438 * 14 13 2 16 16 C 1.35826 * 109.65544 * 359.97438 * 15 14 13 17 17 C 1.39788 * 133.50260 * 180.02562 * 16 15 14 18 18 C 1.37735 * 119.78209 * 179.97438 * 17 16 15 19 19 F 1.35101 * 119.77318 * 179.97438 * 18 17 16 20 20 C 1.39183 * 120.45445 * 359.97438 * 18 17 16 21 21 F 1.35099 * 119.80335 * 180.02562 * 20 18 17 22 22 C 1.37981 * 120.38666 * 0.04215 * 20 18 17 23 23 C 1.38161 * 126.35516 * 239.71733 * 13 2 1 24 24 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 26 26 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 27 27 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 28 28 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 29 29 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 30 30 H 1.07997 * 124.95376 * 359.95885 * 14 13 2 31 31 H 1.08000 * 120.11010 * 359.97438 * 17 16 15 32 32 H 1.08001 * 120.08119 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 1.6458 0.2776 -4.7993 9 14 2.9637 -1.9884 -3.9026 10 1 2.0246 -3.1328 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1756 -2.7077 13 7 2.0183 -0.6905 1.1962 14 6 1.7710 -1.9842 1.5383 15 7 2.3593 -2.2693 2.6630 16 6 3.0254 -1.1773 3.1199 17 6 3.8070 -0.9310 4.2524 18 6 4.3639 0.3145 4.4416 19 9 5.1188 0.5525 5.5364 20 6 4.1543 1.3295 3.5126 21 9 4.7073 2.5460 3.7110 22 6 3.3848 1.1005 2.3904 23 6 2.8203 -0.1508 2.1834 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 1.6055 -1.7198 -1.2951 28 1 3.1264 -0.7994 -1.2055 29 1 1.8931 -0.0454 -5.6799 30 1 1.1734 -2.6735 0.9604 31 1 3.9736 -1.7146 4.9766 32 1 3.2250 1.8918 1.6729 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -38.705812 kcal Electronic energy + Delta-G solvation = -19524.096968 eV Core-core repulsion = 16120.679836 eV Total energy + Delta-G solvation = -3403.417132 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.51107 -49.58822 -43.30664 -38.34088 -36.97929 -34.73884 -32.95329 -30.82963 -30.03623 -29.31427 -25.63775 -24.77915 -23.47168 -23.31375 -20.86630 -19.48552 -19.02829 -18.40182 -18.34053 -17.44770 -16.85055 -16.60503 -16.28145 -16.02838 -16.02249 -15.45562 -15.12463 -15.05962 -14.76654 -14.53965 -14.19405 -13.90477 -13.28950 -13.05259 -12.93592 -12.63858 -12.36558 -12.09841 -11.98906 -11.86491 -11.51508 -11.26234 -11.12410 -10.78975 -9.39698 -9.29250 -8.30972 -6.35836 -0.44731 -0.00759 1.34524 1.39321 1.46367 1.51096 1.60863 2.32966 2.41164 2.63645 3.03644 3.05312 3.15669 3.60382 3.67422 3.90848 4.06286 4.12484 4.21512 4.32551 4.36569 4.63904 4.69753 4.79523 4.88931 5.02692 5.13435 5.19959 5.28874 5.44505 5.52372 5.59133 6.05247 6.21972 6.69943 6.71835 7.29025 8.84207 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.005070 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.542223 B = 5521.623087 C = 5786.588921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.013 4.013 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.017 3.983 8 N -0.943 5.943 9 Si 0.936 3.064 10 H -0.261 1.261 11 H -0.291 1.291 12 H -0.256 1.256 13 N -0.474 5.474 14 C 0.284 3.716 15 N -0.518 5.518 16 C 0.047 3.953 17 C -0.067 4.067 18 C 0.057 3.943 19 F -0.130 7.130 20 C 0.075 3.925 21 F -0.130 7.130 22 C -0.110 4.110 23 C 0.048 3.952 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.014 0.986 29 H 0.267 0.733 30 H 0.245 0.755 31 H 0.171 0.829 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -2.743 15.619 15.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.050 3.950 3 H 0.110 0.890 4 C -0.051 4.051 5 C -0.559 4.559 6 H 0.070 0.930 7 C -0.181 4.181 8 N -0.583 5.583 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.217 1.217 12 H -0.180 1.180 13 N -0.161 5.161 14 C -0.001 4.001 15 N -0.238 5.238 16 C -0.073 4.073 17 C -0.087 4.087 18 C 0.034 3.966 19 F -0.109 7.109 20 C 0.053 3.947 21 F -0.109 7.109 22 C -0.131 4.131 23 C -0.064 4.064 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.261 0.739 31 H 0.188 0.812 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.297 -3.383 15.766 16.177 hybrid contribution 0.684 0.702 -1.011 1.408 sum 1.981 -2.681 14.755 15.127 Atomic orbital electron populations 1.22007 0.91660 1.03755 1.02650 1.21498 0.96481 0.96380 0.80683 0.89009 1.19849 0.96377 0.96893 0.92001 1.21123 1.35395 1.09260 0.90096 0.93015 1.25766 0.96471 1.00251 0.95636 1.70018 1.48215 1.41202 0.98834 0.85875 0.79559 0.80505 0.78011 1.18543 1.21705 1.17954 1.46124 1.39289 1.11716 1.19003 1.26025 0.97120 0.84394 0.92607 1.70526 1.15026 1.26568 1.11642 1.18958 1.01677 0.90567 0.96098 1.20027 0.96165 0.95492 0.97053 1.17050 0.99308 0.93971 0.86238 1.91512 1.73705 1.94868 1.50795 1.17049 1.00373 0.80996 0.96301 1.91513 1.83583 1.40822 1.94965 1.19744 0.99326 0.96120 0.97959 1.18722 0.99250 0.95901 0.92490 0.90723 0.91732 0.90787 0.94398 0.96814 0.92442 0.73916 0.81188 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.06 71.98 0.65 -3.28 16 2 C 0.15 4.73 3.01 44.99 0.14 4.86 16 3 H 0.09 2.96 7.61 -2.39 -0.02 2.94 16 4 C -0.01 -0.51 3.52 29.85 0.11 -0.41 16 5 C -0.52 -25.74 8.96 25.60 0.23 -25.51 16 6 H 0.05 2.78 7.30 -2.91 -0.02 2.76 16 7 C 0.02 0.90 5.47 84.66 0.46 1.36 16 8 N -0.94 -54.53 13.96 21.45 0.30 -54.24 16 9 Si 0.94 40.57 27.47 68.60 1.88 42.46 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -10.53 6.54 99.48 0.65 -9.88 16 13 N -0.47 -13.70 2.67 -497.75 -1.33 -15.03 16 14 C 0.28 7.43 11.60 180.05 2.09 9.51 16 15 N -0.52 -15.02 11.27 -191.99 -2.16 -17.18 16 16 C 0.05 1.35 7.23 39.44 0.28 1.63 16 17 C -0.07 -1.66 10.07 22.53 0.23 -1.43 16 18 C 0.06 1.45 7.29 22.38 0.16 1.61 16 19 F -0.13 -3.31 17.16 44.97 0.77 -2.54 16 20 C 0.07 1.99 7.30 22.44 0.16 2.15 16 21 F -0.13 -3.55 17.17 44.97 0.77 -2.78 16 22 C -0.11 -2.97 9.85 22.35 0.22 -2.75 16 23 C 0.05 1.40 6.87 38.83 0.27 1.66 16 24 H 0.07 1.80 7.95 -2.39 -0.02 1.78 16 25 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 2.36 6.95 -2.39 -0.02 2.34 16 27 H 0.04 1.38 7.51 -2.39 -0.02 1.36 16 28 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 29 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 30 H 0.24 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.16 3.82 7.74 -2.91 -0.02 3.80 16 Total: -1.00 -59.42 285.49 6.33 -53.09 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.10 Total: 6.78 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 5.00 Total: -10.57 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.19 Total: -86.45 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 1.54 Total: -5.32 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.46 kcal Total: -59.42 6.33 -53.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.387 kcal (2) G-P(sol) polarization free energy of solvation -59.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds