Wall clock time and date at job start Mon Mar 30 2020 06:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.09000 * 109.46973 * 2 1
4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3
5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1
6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2
7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2
8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4
9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4
10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5
11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5
12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5
13 13 N 1.46496 * 109.46691 * 239.99707 * 2 1 3
14 14 C 1.36072 * 126.35423 * 299.68351 * 13 2 1
15 15 N 1.30089 * 110.08825 * 179.81925 * 14 13 2
16 16 C 1.35824 * 109.65829 * 0.45955 * 15 14 13
17 17 C 1.39793 * 133.50460 * 179.75292 * 16 15 14
18 18 C 1.37729 * 119.78387 * 180.02562 * 17 16 15
19 19 F 1.35097 * 119.77816 * 179.97438 * 18 17 16
20 20 C 1.39181 * 120.45158 * 359.95580 * 18 17 16
21 21 F 1.35107 * 119.80762 * 180.02562 * 20 18 17
22 22 C 1.37987 * 120.38935 * 359.97438 * 20 18 17
23 23 C 1.38161 * 126.35072 * 120.00542 * 13 2 1
24 24 H 1.09001 * 109.46930 * 60.00301 * 1 2 3
25 25 H 1.08999 * 109.46998 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.46896 * 300.00441 * 1 2 3
27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1
28 28 H 1.08994 * 109.47405 * 54.99807 * 4 2 1
29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5
30 30 H 1.08000 * 124.95355 * 0.02562 * 14 13 2
31 31 H 1.08002 * 120.10870 * 359.97438 * 17 16 15
32 32 H 1.08002 * 120.07831 * 180.02562 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.6414 0.0572 2.4766
6 1 1.0800 0.9744 2.3757
7 6 1.9879 -0.4047 3.7287
8 7 2.6711 -1.5217 3.8515
9 14 1.4871 0.5561 5.2502
10 1 0.7309 1.7678 4.8439
11 1 0.6298 -0.2955 6.1135
12 1 2.7019 0.9596 6.0031
13 7 2.0183 -0.6907 -1.1961
14 6 1.7754 -1.9859 -1.5353
15 7 2.3586 -2.2693 -2.6630
16 6 3.0246 -1.1774 -3.1202
17 6 3.8051 -0.9308 -4.2534
18 6 4.3622 0.3145 -4.4427
19 9 5.1168 0.5525 -5.5377
20 6 4.1526 1.3296 -3.5138
21 9 4.7049 2.5465 -3.7128
22 6 3.3832 1.1007 -2.3914
23 6 2.8159 -0.1495 -2.1860
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 3.1264 -0.7994 1.2056
28 1 1.6054 -1.7196 1.2953
29 1 2.9152 -1.8465 4.7324
30 1 1.1821 -2.6767 -0.9546
31 1 3.9714 -1.7145 -4.9777
32 1 3.2236 1.8922 -1.6741
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695810201.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:29:05
Heat of formation + Delta-G solvation = -29.234429 kcal
Electronic energy + Delta-G solvation = -19458.185708 eV
Core-core repulsion = 16055.179286 eV
Total energy + Delta-G solvation = -3403.006422 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 266.093 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-49.34526 -48.42406 -42.05097 -37.04670 -35.54704 -33.00145 -31.43017 -29.41961
-28.75902 -27.31478 -24.23171 -23.58921 -22.24145 -22.04352 -19.61102 -18.10449
-17.34760 -17.18801 -16.63493 -16.26354 -15.50017 -15.07864 -15.04896 -14.86114
-14.60475 -14.19516 -13.92619 -13.59027 -13.29800 -13.01181 -12.74666 -12.23448
-11.89755 -11.52411 -11.19600 -11.10395 -11.06188 -10.79348 -10.56801 -10.37359
-9.88896 -9.67055 -9.47791 -8.63269 -8.16176 -8.06175 -6.26993 -4.32787
0.72577 1.20096 2.79265 2.86637 3.15932 3.25077 3.26861 3.62381
3.81835 4.20499 4.24096 4.36445 4.75507 4.99183 5.09684 5.17005
5.21944 5.43556 5.53640 5.54542 5.74313 5.80835 5.82937 6.05423
6.29077 6.41906 6.48660 6.58762 6.77003 7.17087 7.28742 7.37139
7.68347 7.95034 8.01675 8.71585 9.33527 10.84006
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.027417 B = 0.004733 C = 0.004380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.020668 B = 5914.091506 C = 6390.902716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.129 3.871
3 H 0.091 0.909
4 C 0.019 3.981
5 C -0.528 4.528
6 H 0.062 0.938
7 C 0.063 3.937
8 N -0.888 5.888
9 Si 0.896 3.104
10 H -0.271 1.271
11 H -0.282 1.282
12 H -0.282 1.282
13 N -0.466 5.466
14 C 0.288 3.712
15 N -0.507 5.507
16 C 0.061 3.939
17 C -0.075 4.075
18 C 0.055 3.945
19 F -0.132 7.132
20 C 0.074 3.926
21 F -0.129 7.129
22 C -0.107 4.107
23 C 0.061 3.939
24 H 0.043 0.957
25 H 0.058 0.942
26 H 0.089 0.911
27 H 0.025 0.975
28 H 0.027 0.973
29 H 0.264 0.736
30 H 0.216 0.784
31 H 0.149 0.851
32 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.292 2.713 -11.662 12.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.029 3.971
3 H 0.109 0.891
4 C -0.019 4.019
5 C -0.566 4.566
6 H 0.080 0.920
7 C -0.140 4.140
8 N -0.525 5.525
9 Si 0.724 3.276
10 H -0.196 1.196
11 H -0.208 1.208
12 H -0.208 1.208
13 N -0.152 5.152
14 C 0.002 3.998
15 N -0.226 5.226
16 C -0.060 4.060
17 C -0.095 4.095
18 C 0.032 3.968
19 F -0.111 7.111
20 C 0.052 3.948
21 F -0.108 7.108
22 C -0.128 4.128
23 C -0.051 4.051
24 H 0.062 0.938
25 H 0.077 0.923
26 H 0.107 0.893
27 H 0.043 0.957
28 H 0.046 0.954
29 H 0.074 0.926
30 H 0.232 0.768
31 H 0.167 0.833
32 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -1.264 1.949 -11.843 12.069
hybrid contribution 0.064 1.418 1.282 1.913
sum -1.199 3.367 -10.561 11.150
Atomic orbital electron populations
1.22077 0.93626 1.02659 1.02268 1.22073 0.95148 0.97214 0.82664
0.89116 1.19493 0.97223 0.96123 0.89041 1.21000 1.36576 1.08810
0.90212 0.92001 1.24992 0.94714 0.94975 0.99323 1.69962 1.37775
1.20805 1.24000 0.86464 0.78458 0.79979 0.82716 1.19572 1.20796
1.20832 1.46245 1.38841 1.11058 1.19057 1.25387 0.97328 0.84527
0.92533 1.70524 1.14693 1.26339 1.11037 1.18712 1.01139 0.90580
0.95529 1.19847 0.97260 0.95136 0.97270 1.17017 0.99455 0.93968
0.86350 1.91499 1.73783 1.94876 1.50894 1.16963 1.00614 0.80956
0.96255 1.91512 1.83651 1.40655 1.94966 1.19633 0.99418 0.96149
0.97648 1.18535 0.98948 0.95349 0.92290 0.93789 0.92254 0.89272
0.95717 0.95440 0.92611 0.76779 0.83335 0.83687
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.23 9.06 37.16 0.34 -1.90 16
2 C 0.13 2.23 3.01 -67.93 -0.20 2.03 16
3 H 0.09 1.55 7.61 -51.93 -0.40 1.15 16
4 C 0.02 0.42 4.45 -27.88 -0.12 0.29 16
5 C -0.53 -12.92 8.41 -34.44 -0.29 -13.21 16
6 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16
7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
8 N -0.89 -24.51 13.29 55.43 0.74 -23.78 16
9 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16
10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16
11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
13 N -0.47 -7.69 2.67 -108.68 -0.29 -7.98 16
14 C 0.29 4.51 11.60 -89.77 -1.04 3.47 16
15 N -0.51 -8.46 11.27 -12.04 -0.14 -8.60 16
16 C 0.06 0.99 7.23 -84.68 -0.61 0.38 16
17 C -0.07 -1.06 10.07 -39.19 -0.39 -1.45 16
18 C 0.05 0.78 7.29 -39.42 -0.29 0.49 16
19 F -0.13 -1.87 17.16 2.25 0.04 -1.83 16
20 C 0.07 1.08 7.30 -39.32 -0.29 0.79 16
21 F -0.13 -1.90 17.17 2.25 0.04 -1.86 16
22 C -0.11 -1.58 9.85 -39.46 -0.39 -1.97 16
23 C 0.06 1.00 6.87 -83.96 -0.58 0.42 16
24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
25 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16
26 H 0.09 1.41 6.95 -51.93 -0.36 1.05 16
27 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16
28 H 0.03 0.63 8.08 -51.93 -0.42 0.21 16
29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
30 H 0.22 2.74 8.06 -52.49 -0.42 2.32 16
31 H 0.15 1.79 8.06 -52.49 -0.42 1.36 16
32 H 0.15 1.94 7.74 -52.49 -0.41 1.53 16
LS Contribution 289.09 15.07 4.36 4.36
Total: -1.00 -27.64 289.09 -7.43 -35.07
By element:
Atomic # 1 Polarization: 2.12 SS G_CDS: -3.19 Total: -1.07 kcal
Atomic # 6 Polarization: -5.15 SS G_CDS: -3.97 Total: -9.12 kcal
Atomic # 7 Polarization: -40.66 SS G_CDS: 0.31 Total: -40.35 kcal
Atomic # 9 Polarization: -3.76 SS G_CDS: 0.08 Total: -3.69 kcal
Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -27.64 -7.43 -35.07 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695810201.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.838 kcal
(2) G-P(sol) polarization free energy of solvation -27.639 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.072 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds