Wall clock time and date at job start Mon Mar 30 2020 06:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 H 1.09000 * 109.46973 * 2 1
4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3
5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1
6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2
7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2
8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4
9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4
10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5
11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5
12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5
13 13 N 1.46496 * 109.46691 * 239.99707 * 2 1 3
14 14 C 1.36072 * 126.35423 * 299.68351 * 13 2 1
15 15 N 1.30089 * 110.08825 * 179.81925 * 14 13 2
16 16 C 1.35824 * 109.65829 * 0.45955 * 15 14 13
17 17 C 1.39793 * 133.50460 * 179.75292 * 16 15 14
18 18 C 1.37729 * 119.78387 * 180.02562 * 17 16 15
19 19 F 1.35097 * 119.77816 * 179.97438 * 18 17 16
20 20 C 1.39181 * 120.45158 * 359.95580 * 18 17 16
21 21 F 1.35107 * 119.80762 * 180.02562 * 20 18 17
22 22 C 1.37987 * 120.38935 * 359.97438 * 20 18 17
23 23 C 1.38161 * 126.35072 * 120.00542 * 13 2 1
24 24 H 1.09001 * 109.46930 * 60.00301 * 1 2 3
25 25 H 1.08999 * 109.46998 * 180.02562 * 1 2 3
26 26 H 1.09004 * 109.46896 * 300.00441 * 1 2 3
27 27 H 1.09004 * 109.47066 * 174.99977 * 4 2 1
28 28 H 1.08994 * 109.47405 * 54.99807 * 4 2 1
29 29 H 0.97005 * 119.99651 * 179.97438 * 8 7 5
30 30 H 1.08000 * 124.95355 * 0.02562 * 14 13 2
31 31 H 1.08002 * 120.10870 * 359.97438 * 17 16 15
32 32 H 1.08002 * 120.07831 * 180.02562 * 22 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.6414 0.0572 2.4766
6 1 1.0800 0.9744 2.3757
7 6 1.9879 -0.4047 3.7287
8 7 2.6711 -1.5217 3.8515
9 14 1.4871 0.5561 5.2502
10 1 0.7309 1.7678 4.8439
11 1 0.6298 -0.2955 6.1135
12 1 2.7019 0.9596 6.0031
13 7 2.0183 -0.6907 -1.1961
14 6 1.7754 -1.9859 -1.5353
15 7 2.3586 -2.2693 -2.6630
16 6 3.0246 -1.1774 -3.1202
17 6 3.8051 -0.9308 -4.2534
18 6 4.3622 0.3145 -4.4427
19 9 5.1168 0.5525 -5.5377
20 6 4.1526 1.3296 -3.5138
21 9 4.7049 2.5465 -3.7128
22 6 3.3832 1.1007 -2.3914
23 6 2.8159 -0.1495 -2.1860
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5139 0.8900
27 1 3.1264 -0.7994 1.2056
28 1 1.6054 -1.7196 1.2953
29 1 2.9152 -1.8465 4.7324
30 1 1.1821 -2.6767 -0.9546
31 1 3.9714 -1.7145 -4.9777
32 1 3.2236 1.8922 -1.6741
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695810201.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:29:05
Heat of formation + Delta-G solvation = -41.778484 kcal
Electronic energy + Delta-G solvation = -19458.729659 eV
Core-core repulsion = 16055.179286 eV
Total energy + Delta-G solvation = -3403.550373 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 266.093 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-50.50251 -49.57952 -43.28460 -38.30211 -36.94065 -34.75873 -32.81758 -30.70080
-29.98360 -28.91160 -25.85255 -24.76856 -23.63799 -23.35799 -20.91386 -19.35442
-18.72326 -18.36175 -18.29401 -17.43606 -16.87140 -16.60686 -16.26818 -16.11262
-16.01407 -15.40501 -15.10220 -14.94640 -14.52074 -14.41685 -14.26928 -13.79196
-13.21720 -12.93509 -12.85102 -12.62090 -12.37477 -12.26958 -12.09156 -11.86446
-11.36337 -11.18042 -11.10341 -10.60370 -9.37977 -9.27592 -8.23475 -6.34081
-0.43853 0.00779 1.42029 1.43872 1.52869 1.56782 1.63898 2.40733
2.42018 2.64944 3.04613 3.13147 3.17328 3.61248 3.71584 3.94149
4.07005 4.19931 4.23350 4.37301 4.40363 4.64236 4.70071 4.84417
4.94837 5.15986 5.24779 5.28659 5.37552 5.54366 5.61247 5.71900
6.00295 6.18852 6.71189 6.80737 7.36252 8.88489
Molecular weight = 266.09amu
Principal moments of inertia in cm(-1)
A = 0.027417 B = 0.004733 C = 0.004380
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1021.020668 B = 5914.091506 C = 6390.902716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.142 3.858
3 H 0.094 0.906
4 C 0.027 3.973
5 C -0.530 4.530
6 H 0.075 0.925
7 C 0.007 3.993
8 N -0.930 5.930
9 Si 0.960 3.040
10 H -0.256 1.256
11 H -0.281 1.281
12 H -0.287 1.287
13 N -0.472 5.472
14 C 0.284 3.716
15 N -0.520 5.520
16 C 0.045 3.955
17 C -0.068 4.068
18 C 0.057 3.943
19 F -0.130 7.130
20 C 0.075 3.925
21 F -0.129 7.129
22 C -0.108 4.108
23 C 0.047 3.953
24 H 0.065 0.935
25 H 0.065 0.935
26 H 0.082 0.918
27 H -0.013 1.013
28 H 0.014 0.986
29 H 0.263 0.737
30 H 0.237 0.763
31 H 0.170 0.830
32 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.129 3.683 -12.214 12.933
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.042 3.958
3 H 0.112 0.888
4 C -0.011 4.011
5 C -0.568 4.568
6 H 0.093 0.907
7 C -0.192 4.192
8 N -0.570 5.570
9 Si 0.785 3.215
10 H -0.180 1.180
11 H -0.207 1.207
12 H -0.213 1.213
13 N -0.158 5.158
14 C -0.001 4.001
15 N -0.240 5.240
16 C -0.075 4.075
17 C -0.088 4.088
18 C 0.034 3.966
19 F -0.108 7.108
20 C 0.053 3.947
21 F -0.108 7.108
22 C -0.130 4.130
23 C -0.065 4.065
24 H 0.084 0.916
25 H 0.084 0.916
26 H 0.101 0.899
27 H 0.005 0.995
28 H 0.032 0.968
29 H 0.072 0.928
30 H 0.253 0.747
31 H 0.188 0.812
32 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -2.106 2.935 -12.423 12.937
hybrid contribution 0.382 1.108 1.373 1.805
sum -1.724 4.043 -11.050 11.892
Atomic orbital electron populations
1.22004 0.91507 1.03401 1.02966 1.21752 0.96616 0.96460 0.81005
0.88756 1.19295 0.94748 0.95898 0.91133 1.21458 1.35446 1.09004
0.90925 0.90740 1.25850 0.94925 0.95823 1.02573 1.70092 1.39686
1.22738 1.24510 0.85465 0.77889 0.79063 0.79053 1.17988 1.20717
1.21298 1.46150 1.39339 1.11414 1.18897 1.25872 0.97233 0.84550
0.92482 1.70512 1.15191 1.26695 1.11571 1.18993 1.01725 0.90542
0.96275 1.20020 0.96247 0.95575 0.96976 1.17024 0.99313 0.93937
0.86280 1.91509 1.73704 1.94857 1.50761 1.17018 1.00407 0.80995
0.96254 1.91514 1.83622 1.40689 1.94953 1.19738 0.99221 0.96066
0.97967 1.18756 0.99309 0.95999 0.92446 0.91645 0.91580 0.89876
0.99492 0.96816 0.92807 0.74696 0.81243 0.82466
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.95 9.06 71.98 0.65 -3.29 16
2 C 0.14 4.78 3.01 44.99 0.14 4.91 16
3 H 0.09 3.09 7.61 -2.39 -0.02 3.07 16
4 C 0.03 1.20 4.45 29.85 0.13 1.34 16
5 C -0.53 -25.70 8.41 25.60 0.22 -25.49 16
6 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16
7 C 0.01 0.36 5.46 84.66 0.46 0.83 16
8 N -0.93 -52.25 13.29 21.45 0.28 -51.96 16
9 Si 0.96 40.31 29.54 68.60 2.03 42.34 16
10 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16
11 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16
12 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16
13 N -0.47 -15.12 2.67 -497.77 -1.33 -16.44 16
14 C 0.28 8.64 11.60 180.05 2.09 10.73 16
15 N -0.52 -16.87 11.27 -191.99 -2.16 -19.04 16
16 C 0.04 1.40 7.23 39.44 0.29 1.69 16
17 C -0.07 -1.82 10.07 22.53 0.23 -1.59 16
18 C 0.06 1.53 7.29 22.38 0.16 1.70 16
19 F -0.13 -3.43 17.16 44.97 0.77 -2.66 16
20 C 0.08 2.08 7.30 22.44 0.16 2.25 16
21 F -0.13 -3.59 17.17 44.97 0.77 -2.82 16
22 C -0.11 -3.07 9.85 22.35 0.22 -2.85 16
23 C 0.05 1.47 6.87 38.83 0.27 1.74 16
24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
25 H 0.07 1.75 7.95 -2.39 -0.02 1.73 16
26 H 0.08 2.44 6.95 -2.38 -0.02 2.42 16
27 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16
28 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16
29 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16
30 H 0.24 5.79 8.06 -2.91 -0.02 5.76 16
31 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16
32 H 0.16 3.97 7.74 -2.91 -0.02 3.95 16
Total: -1.00 -58.22 289.09 6.52 -51.70
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: 1.15 Total: 6.93 kcal
Atomic # 6 Polarization: -13.06 SS G_CDS: 5.01 Total: -8.05 kcal
Atomic # 7 Polarization: -84.23 SS G_CDS: -3.21 Total: -87.44 kcal
Atomic # 9 Polarization: -7.02 SS G_CDS: 1.54 Total: -5.48 kcal
Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal
Total: -58.22 6.52 -51.70 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695810201.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.924 kcal
(2) G-P(sol) polarization free energy of solvation -58.225 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds