Wall clock time and date at job start Mon Mar 30 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47344 * 2 1 4 4 O 1.42903 * 109.46548 * 119.99736 * 2 1 3 5 5 C 1.50698 * 109.46923 * 239.99637 * 2 1 3 6 6 C 1.38325 * 119.96112 * 279.99781 * 5 2 1 7 7 C 1.38278 * 120.15937 * 179.97438 * 6 5 2 8 8 C 1.38105 * 120.08193 * 0.02893 * 7 6 5 9 9 C 1.38947 * 119.91785 * 359.97438 * 8 7 6 10 10 S 1.76200 * 120.07999 * 180.02562 * 9 8 7 11 11 C 1.81397 * 103.00148 * 95.47179 * 10 9 8 12 12 H 1.09003 * 109.46806 * 52.87749 * 11 10 9 13 13 C 1.52998 * 109.47016 * 292.87471 * 11 10 9 14 14 C 1.52997 * 109.47372 * 172.87268 * 11 10 9 15 15 C 1.50708 * 109.47377 * 295.00303 * 14 11 10 16 16 H 1.07996 * 119.99645 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00122 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99761 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00202 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47304 * 89.99855 * 19 17 15 21 21 H 1.48496 * 109.47310 * 210.00071 * 19 17 15 22 22 H 1.48504 * 109.47098 * 329.99925 * 19 17 15 23 23 C 1.38059 * 119.95646 * 100.28627 * 5 2 1 24 24 H 1.08995 * 109.47869 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47244 * 300.00398 * 1 2 3 26 26 H 1.09007 * 109.46956 * 59.99739 * 1 2 3 27 27 H 0.96702 * 114.00033 * 60.00541 * 4 2 1 28 28 H 1.08002 * 119.92025 * 359.97438 * 6 5 2 29 29 H 1.08001 * 119.95542 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.04341 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.47200 * 65.21442 * 13 11 10 32 32 H 1.09007 * 109.46780 * 185.21211 * 13 11 10 33 33 H 1.08993 * 109.47096 * 305.20964 * 13 11 10 34 34 H 1.09007 * 109.47322 * 54.99729 * 14 11 10 35 35 H 1.09002 * 109.47648 * 175.00003 * 14 11 10 36 36 H 0.97001 * 119.99617 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.04819 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0323 -0.7105 -1.2304 6 6 2.0664 -2.0929 -1.2643 7 6 2.5260 -2.7490 -2.3914 8 6 2.9533 -2.0257 -3.4875 9 6 2.9206 -0.6370 -3.4570 10 16 3.4642 0.2901 -4.8533 11 6 1.9215 0.6239 -5.7472 12 1 1.1989 1.0769 -5.0683 13 6 1.3549 -0.6878 -6.2941 14 6 2.2011 1.5816 -6.9072 15 6 2.6428 2.9155 -6.3622 16 1 2.7162 3.0652 -5.2952 17 6 2.9530 3.9445 -7.2257 18 7 3.3379 5.1087 -6.7500 19 14 2.8267 3.6853 -9.0713 20 1 1.4606 4.0445 -9.5293 21 1 3.8220 4.5447 -9.7612 22 1 3.0972 2.2604 -9.3907 23 6 2.4634 0.0193 -2.3202 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5952 1.2330 28 1 1.7332 -2.6611 -0.4084 29 1 2.5508 -3.8285 -2.4145 30 1 3.3126 -2.5388 -4.3673 31 1 1.0693 -1.3342 -5.4643 32 1 0.4795 -0.4773 -6.9086 33 1 2.1121 -1.1863 -6.8992 34 1 2.9883 1.1683 -7.5379 35 1 1.2940 1.7125 -7.4972 36 1 3.5566 5.8325 -7.3576 37 1 2.4413 1.0987 -2.2912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:26 Heat of formation + Delta-G solvation = -43.644893 kcal Electronic energy + Delta-G solvation = -17549.491854 eV Core-core repulsion = 14803.241277 eV Total energy + Delta-G solvation = -2746.250577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.62163 -37.03049 -34.66521 -32.23242 -32.05875 -30.88616 -29.33937 -27.99916 -24.07968 -23.12047 -22.73628 -21.33979 -20.31361 -17.91646 -16.72811 -16.08359 -15.98378 -15.83582 -15.01286 -14.49027 -14.26118 -14.15368 -13.63042 -13.50945 -13.09802 -12.66775 -12.36769 -12.26873 -12.19437 -11.98287 -11.78621 -11.77782 -11.06731 -11.05682 -10.92466 -10.46193 -10.21976 -10.07290 -9.72509 -9.56226 -9.26536 -8.80799 -8.57547 -8.42796 -7.01409 -6.02442 -4.00402 1.07994 1.35220 2.31858 3.24256 3.29850 3.38228 3.40612 3.77643 4.26162 4.44980 4.48390 4.77054 4.93478 5.01223 5.07219 5.31089 5.34300 5.46847 5.51160 5.56665 5.60554 5.63867 5.83806 5.88606 5.93649 5.98542 6.24960 6.33629 6.40894 6.43331 6.48035 6.52468 6.88252 7.00467 7.20439 7.38585 7.72317 8.53117 9.04796 9.58435 11.10465 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.004749 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.837935 B = 5895.117033 C = 6460.151046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.144 3.856 3 H 0.110 0.890 4 O -0.557 6.557 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.128 4.128 8 C -0.077 4.077 9 C -0.107 4.107 10 S -0.129 6.129 11 C -0.044 4.044 12 H 0.079 0.921 13 C -0.146 4.146 14 C 0.003 3.997 15 C -0.516 4.516 16 H 0.081 0.919 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.873 3.127 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.065 4.065 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.371 0.629 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.025 0.975 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 -15.773 10.206 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.085 3.915 3 H 0.128 0.872 4 O -0.363 6.363 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.148 4.148 8 C -0.098 4.098 9 C -0.218 4.218 10 S 0.105 5.895 11 C -0.172 4.172 12 H 0.098 0.902 13 C -0.206 4.206 14 C -0.036 4.036 15 C -0.554 4.554 16 H 0.099 0.901 17 C -0.132 4.132 18 N -0.538 5.538 19 Si 0.700 3.300 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.085 4.085 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.218 0.782 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.036 -14.652 9.940 18.160 hybrid contribution -1.555 -0.919 -0.821 1.984 sum -5.591 -15.571 9.119 18.891 Atomic orbital electron populations 1.22484 0.95407 1.02653 1.03181 1.20829 0.93031 0.96195 0.81470 0.87236 1.86639 1.77365 1.28909 1.43359 1.20556 1.01266 0.94342 0.96753 1.20858 0.99543 0.93645 0.97968 1.21100 1.00392 0.99710 0.93595 1.21650 0.96792 0.93061 0.98313 1.22189 1.03868 0.96263 0.99509 1.86011 1.15274 1.66583 1.21622 1.23323 0.95055 0.98106 1.00739 0.90247 1.22162 1.01103 0.96643 1.00643 1.19497 0.97101 0.94619 0.92354 1.21121 1.44835 0.93702 0.95770 0.90052 1.24972 0.94701 0.95072 0.98426 1.69906 1.46075 1.02890 1.34959 0.86886 0.78033 0.78627 0.86429 1.20341 1.21286 1.19021 1.21554 0.94970 1.00392 0.91604 0.92311 0.91436 0.91054 0.78161 0.86478 0.85893 0.85346 0.93588 0.92211 0.91947 0.95656 0.95428 0.92759 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.51 37.16 0.35 -1.29 16 2 C 0.14 1.57 3.83 -27.88 -0.11 1.46 16 3 H 0.11 1.25 8.00 -51.93 -0.42 0.84 16 4 O -0.56 -5.99 13.19 -35.23 -0.46 -6.45 16 5 C -0.13 -1.58 4.97 -104.66 -0.52 -2.10 16 6 C -0.10 -1.10 9.32 -39.53 -0.37 -1.47 16 7 C -0.13 -1.45 10.04 -39.62 -0.40 -1.85 16 8 C -0.08 -1.06 9.44 -39.37 -0.37 -1.43 16 9 C -0.11 -1.73 5.29 -39.04 -0.21 -1.94 16 10 S -0.13 -2.52 20.40 -107.50 -2.19 -4.72 16 11 C -0.04 -0.87 2.73 -26.73 -0.07 -0.94 16 12 H 0.08 1.60 8.14 -51.92 -0.42 1.17 16 13 C -0.15 -2.33 9.06 37.16 0.34 -2.00 16 14 C 0.00 0.06 3.52 -27.88 -0.10 -0.03 16 15 C -0.52 -14.40 9.09 -34.44 -0.31 -14.71 16 16 H 0.08 2.46 7.85 -52.49 -0.41 2.05 16 17 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 18 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 19 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 23 C -0.06 -0.98 9.41 -39.36 -0.37 -1.35 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.37 2.59 7.50 45.56 0.34 2.93 16 28 H 0.12 0.89 6.78 -52.49 -0.36 0.54 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 31 H 0.05 0.67 7.51 -51.93 -0.39 0.28 16 32 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.61 7.20 -51.93 -0.37 0.23 16 35 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.13 2.08 8.03 -52.49 -0.42 1.66 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -31.57 321.15 -8.92 -40.49 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -4.97 Total: 1.61 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.23 Total: -25.74 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: 0.77 Total: -26.83 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.46 Total: -6.45 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: -2.52 SS G_CDS: -2.19 Total: -4.72 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.57 -8.92 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.156 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds