Wall clock time and date at job start Mon Mar 30 2020 07:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47344 * 2 1 4 4 O 1.42903 * 109.46548 * 119.99736 * 2 1 3 5 5 C 1.50698 * 109.46923 * 239.99637 * 2 1 3 6 6 C 1.38325 * 119.96112 * 279.99781 * 5 2 1 7 7 C 1.38278 * 120.15937 * 179.97438 * 6 5 2 8 8 C 1.38105 * 120.08193 * 0.02893 * 7 6 5 9 9 C 1.38947 * 119.91785 * 359.97438 * 8 7 6 10 10 S 1.76200 * 120.07999 * 180.02562 * 9 8 7 11 11 C 1.81397 * 103.00148 * 95.47179 * 10 9 8 12 12 H 1.09003 * 109.46806 * 52.87749 * 11 10 9 13 13 C 1.52998 * 109.47016 * 292.87471 * 11 10 9 14 14 C 1.52997 * 109.47372 * 172.87268 * 11 10 9 15 15 C 1.50708 * 109.47377 * 295.00303 * 14 11 10 16 16 H 1.07996 * 119.99645 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00122 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99761 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00202 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47304 * 89.99855 * 19 17 15 21 21 H 1.48496 * 109.47310 * 210.00071 * 19 17 15 22 22 H 1.48504 * 109.47098 * 329.99925 * 19 17 15 23 23 C 1.38059 * 119.95646 * 100.28627 * 5 2 1 24 24 H 1.08995 * 109.47869 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47244 * 300.00398 * 1 2 3 26 26 H 1.09007 * 109.46956 * 59.99739 * 1 2 3 27 27 H 0.96702 * 114.00033 * 60.00541 * 4 2 1 28 28 H 1.08002 * 119.92025 * 359.97438 * 6 5 2 29 29 H 1.08001 * 119.95542 * 180.02562 * 7 6 5 30 30 H 1.07998 * 120.04341 * 179.97438 * 8 7 6 31 31 H 1.08995 * 109.47200 * 65.21442 * 13 11 10 32 32 H 1.09007 * 109.46780 * 185.21211 * 13 11 10 33 33 H 1.08993 * 109.47096 * 305.20964 * 13 11 10 34 34 H 1.09007 * 109.47322 * 54.99729 * 14 11 10 35 35 H 1.09002 * 109.47648 * 175.00003 * 14 11 10 36 36 H 0.97001 * 119.99617 * 179.97438 * 18 17 15 37 37 H 1.07997 * 120.04819 * 0.02562 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.0323 -0.7105 -1.2304 6 6 2.0664 -2.0929 -1.2643 7 6 2.5260 -2.7490 -2.3914 8 6 2.9533 -2.0257 -3.4875 9 6 2.9206 -0.6370 -3.4570 10 16 3.4642 0.2901 -4.8533 11 6 1.9215 0.6239 -5.7472 12 1 1.1989 1.0769 -5.0683 13 6 1.3549 -0.6878 -6.2941 14 6 2.2011 1.5816 -6.9072 15 6 2.6428 2.9155 -6.3622 16 1 2.7162 3.0652 -5.2952 17 6 2.9530 3.9445 -7.2257 18 7 3.3379 5.1087 -6.7500 19 14 2.8267 3.6853 -9.0713 20 1 1.4606 4.0445 -9.5293 21 1 3.8220 4.5447 -9.7612 22 1 3.0972 2.2604 -9.3907 23 6 2.4634 0.0193 -2.3202 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.7209 -1.5952 1.2330 28 1 1.7332 -2.6611 -0.4084 29 1 2.5508 -3.8285 -2.4145 30 1 3.3126 -2.5388 -4.3673 31 1 1.0693 -1.3342 -5.4643 32 1 0.4795 -0.4773 -6.9086 33 1 2.1121 -1.1863 -6.8992 34 1 2.9883 1.1683 -7.5379 35 1 1.2940 1.7125 -7.4972 36 1 3.5566 5.8325 -7.3576 37 1 2.4413 1.0987 -2.2912 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:25 Heat of formation + Delta-G solvation = -63.346736 kcal Electronic energy + Delta-G solvation = -17550.346190 eV Core-core repulsion = 14803.241277 eV Total energy + Delta-G solvation = -2747.104913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58787 -37.92683 -36.43815 -34.14218 -33.09852 -31.93414 -30.25759 -29.78094 -25.04417 -24.88105 -23.77834 -22.55336 -21.78979 -18.92819 -18.87443 -17.28643 -16.98512 -16.82755 -16.45391 -16.25457 -15.31522 -15.18236 -14.91172 -14.59848 -14.47462 -14.17132 -14.06032 -13.50906 -13.30678 -13.19448 -12.97858 -12.74113 -12.63776 -12.57282 -11.92627 -11.87580 -11.78437 -11.60132 -11.41281 -11.26173 -10.90173 -10.74721 -9.83640 -9.64736 -8.56509 -8.24296 -6.28085 -0.00540 0.33300 0.96650 1.35055 1.38245 1.48735 1.88175 2.37211 2.70515 3.10093 3.49702 3.55847 3.90596 4.00420 4.05493 4.17723 4.19067 4.23833 4.38412 4.49303 4.52853 4.68700 4.80027 4.85932 4.91534 4.97804 4.99345 5.04939 5.18302 5.19146 5.35846 5.37908 5.41734 5.48353 5.62335 5.91337 6.30762 6.77703 6.78394 7.34030 8.91547 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.004749 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.837935 B = 5895.117033 C = 6460.151046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.147 3.853 3 H 0.092 0.908 4 O -0.567 6.567 5 C -0.125 4.125 6 C -0.092 4.092 7 C -0.117 4.117 8 C -0.083 4.083 9 C -0.119 4.119 10 S -0.191 6.191 11 C -0.037 4.037 12 H 0.063 0.937 13 C -0.134 4.134 14 C 0.006 3.994 15 C -0.518 4.518 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.944 3.056 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.247 1.247 23 C -0.090 4.090 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.389 0.611 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.138 0.862 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.264 0.736 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -19.390 10.301 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.088 3.912 3 H 0.110 0.890 4 O -0.375 6.375 5 C -0.127 4.127 6 C -0.109 4.109 7 C -0.136 4.136 8 C -0.104 4.104 9 C -0.230 4.230 10 S 0.043 5.957 11 C -0.165 4.165 12 H 0.081 0.919 13 C -0.193 4.193 14 C -0.032 4.032 15 C -0.556 4.556 16 H 0.056 0.944 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.768 3.232 20 H -0.188 1.188 21 H -0.213 1.213 22 H -0.171 1.171 23 C -0.111 4.111 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.240 0.760 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.427 -18.297 10.037 21.563 hybrid contribution -1.114 0.157 -0.620 1.285 sum -6.541 -18.139 9.417 21.459 Atomic orbital electron populations 1.22420 0.93781 1.03882 1.02975 1.20712 0.94133 0.95357 0.81042 0.89034 1.86623 1.77660 1.30470 1.42788 1.20728 1.00514 0.95392 0.96100 1.21367 0.97565 0.92832 0.99170 1.21529 0.98287 1.01520 0.92302 1.21793 0.96981 0.91744 0.99866 1.21935 1.06345 0.97007 0.97725 1.86034 1.16691 1.68508 1.24513 1.23168 0.94658 0.99433 0.99200 0.91879 1.22050 1.01501 0.94436 1.01330 1.19413 0.97177 0.92943 0.93708 1.21365 1.44188 0.96070 0.93997 0.94387 1.25944 0.94447 0.94598 1.04136 1.70075 1.48027 1.04144 1.36976 0.85744 0.78565 0.79430 0.79474 1.18835 1.21281 1.17051 1.21454 0.97044 0.99622 0.92992 0.90324 0.90686 0.92239 0.76048 0.82166 0.81987 0.84455 0.91985 0.90751 0.91239 0.95763 0.94177 0.92687 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 9.51 71.98 0.68 -2.17 16 2 C 0.15 3.04 3.83 29.85 0.11 3.16 16 3 H 0.09 2.19 8.00 -2.39 -0.02 2.17 16 4 O -0.57 -10.78 13.19 -148.98 -1.96 -12.74 16 5 C -0.13 -2.95 4.97 -19.89 -0.10 -3.05 16 6 C -0.09 -1.61 9.32 22.30 0.21 -1.40 16 7 C -0.12 -2.15 10.04 22.25 0.22 -1.92 16 8 C -0.08 -2.10 9.44 22.41 0.21 -1.89 16 9 C -0.12 -3.88 5.29 22.62 0.12 -3.76 16 10 S -0.19 -7.83 20.40 -56.49 -1.15 -8.98 16 11 C -0.04 -1.47 2.73 30.59 0.08 -1.38 16 12 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 13 C -0.13 -4.04 9.06 71.98 0.65 -3.39 16 14 C 0.01 0.28 3.52 29.85 0.10 0.38 16 15 C -0.52 -30.15 9.09 25.60 0.23 -29.92 16 16 H 0.04 2.47 7.85 -2.91 -0.02 2.45 16 17 C 0.01 0.31 5.47 84.65 0.46 0.77 16 18 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 19 Si 0.94 44.59 27.47 68.60 1.88 46.47 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 23 C -0.09 -2.84 9.41 22.41 0.21 -2.63 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 27 H 0.39 3.83 7.50 -74.06 -0.56 3.27 16 28 H 0.16 1.46 6.78 -2.91 -0.02 1.44 16 29 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.06 1.67 7.51 -2.39 -0.02 1.65 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.02 1.15 7.20 -2.38 -0.02 1.13 16 35 H 0.04 1.78 7.57 -2.39 -0.02 1.77 16 36 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.11 3.78 8.03 -2.91 -0.02 3.76 16 Total: -1.00 -72.36 321.15 2.71 -69.65 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.44 Total: 13.37 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 3.21 Total: -47.21 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.30 Total: -60.55 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -1.96 Total: -12.74 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.15 Total: -8.98 kcal Total: -72.36 2.71 -69.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.302 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds