Wall clock time and date at job start Mon Mar 30 2020 07:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47059 * 2 1 4 4 O 1.42900 * 109.46971 * 240.00858 * 2 1 3 5 5 C 1.50691 * 109.47470 * 120.00571 * 2 1 3 6 6 C 1.38329 * 119.96199 * 85.25433 * 5 2 1 7 7 C 1.38282 * 120.16253 * 180.29844 * 6 5 2 8 8 C 1.38104 * 120.07694 * 359.72860 * 7 6 5 9 9 C 1.38955 * 119.92200 * 359.97438 * 8 7 6 10 10 S 1.76199 * 120.07963 * 180.02562 * 9 8 7 11 11 C 1.81401 * 103.00070 * 263.95227 * 10 9 8 12 12 H 1.08997 * 109.47069 * 307.34056 * 11 10 9 13 13 C 1.53001 * 109.47211 * 67.34086 * 11 10 9 14 14 C 1.53004 * 109.47151 * 187.34079 * 11 10 9 15 15 C 1.50706 * 109.47049 * 64.99783 * 14 11 10 16 16 H 1.08001 * 119.99442 * 0.02562 * 15 14 11 17 17 C 1.37868 * 119.99695 * 179.97438 * 15 14 11 18 18 N 1.31519 * 119.99862 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00233 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.46946 * 90.00009 * 19 17 15 21 21 H 1.48506 * 109.46865 * 209.99747 * 19 17 15 22 22 H 1.48497 * 109.46870 * 329.99689 * 19 17 15 23 23 C 1.38066 * 119.96067 * 264.99863 * 5 2 1 24 24 H 1.08998 * 109.47146 * 299.99029 * 1 2 3 25 25 H 1.09003 * 109.47310 * 59.99422 * 1 2 3 26 26 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 27 27 H 0.96700 * 113.99795 * 299.99663 * 4 2 1 28 28 H 1.08002 * 119.91703 * 0.04933 * 6 5 2 29 29 H 1.07997 * 119.96111 * 179.69972 * 7 6 5 30 30 H 1.08003 * 120.03581 * 179.97438 * 8 7 6 31 31 H 1.08996 * 109.46982 * 181.56602 * 13 11 10 32 32 H 1.08997 * 109.46661 * 301.56800 * 13 11 10 33 33 H 1.08998 * 109.46910 * 61.56595 * 13 11 10 34 34 H 1.08993 * 109.47207 * 184.99977 * 14 11 10 35 35 H 1.09008 * 109.46949 * 305.00114 * 14 11 10 36 36 H 0.96998 * 120.00254 * 180.02562 * 18 17 15 37 37 H 1.07994 * 120.03947 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0324 -0.7105 1.2303 6 6 2.1692 -2.0870 1.2257 7 6 2.6240 -2.7438 2.3544 8 6 2.9486 -2.0264 3.4890 9 6 2.8183 -0.6430 3.4953 10 16 3.2319 0.2764 4.9403 11 6 1.6285 0.4889 5.7617 12 1 0.9125 0.9115 5.0569 13 6 1.1219 -0.8695 6.2506 14 6 1.7879 1.4334 6.9548 15 6 2.1683 2.8058 6.4618 16 1 2.2844 2.9863 5.4033 17 6 2.3672 3.8310 7.3620 18 7 2.6987 5.0288 6.9317 19 14 2.1657 3.5188 9.1927 20 1 3.4668 3.0937 9.7685 21 1 1.7125 4.7654 9.8604 22 1 1.1575 2.4492 9.4043 23 6 2.3606 0.0137 2.3590 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7210 -1.5950 -1.2331 28 1 1.9164 -2.6505 0.3397 29 1 2.7250 -3.8190 2.3488 30 1 3.3034 -2.5401 4.3703 31 1 0.1458 -0.7458 6.7194 32 1 1.0350 -1.5508 5.4043 33 1 1.8243 -1.2793 6.9764 34 1 0.8462 1.4915 7.5005 35 1 2.5681 1.0555 7.6157 36 1 2.8390 5.7500 7.5650 37 1 2.2578 1.0888 2.3604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:30 Heat of formation + Delta-G solvation = -63.160645 kcal Electronic energy + Delta-G solvation = -17559.113303 eV Core-core repulsion = 14812.016460 eV Total energy + Delta-G solvation = -2747.096843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59314 -37.93020 -36.43814 -34.14186 -33.10696 -31.92360 -30.26281 -29.78518 -25.04585 -24.87126 -23.78353 -22.55278 -21.79012 -18.94013 -18.88162 -17.28098 -16.97020 -16.83134 -16.49465 -16.22787 -15.29141 -15.21559 -14.92192 -14.58719 -14.48553 -14.17952 -14.04426 -13.50120 -13.30456 -13.19639 -12.96732 -12.75178 -12.67802 -12.49208 -12.00521 -11.91297 -11.73541 -11.57114 -11.41582 -11.27242 -10.91401 -10.74434 -9.83011 -9.64779 -8.56304 -8.24259 -6.28043 -0.00418 0.33306 0.96790 1.36303 1.37195 1.47964 1.88253 2.37091 2.70544 3.10226 3.47897 3.55626 3.91181 4.00474 4.05951 4.17776 4.19091 4.23162 4.38560 4.48692 4.52781 4.68428 4.79354 4.85279 4.91539 4.97836 4.99052 5.05552 5.18913 5.19627 5.34473 5.37822 5.41669 5.48173 5.62271 5.91202 6.30797 6.77200 6.78414 7.34073 8.91582 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.004767 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.792015 B = 5872.665843 C = 6440.959633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.147 3.853 3 H 0.093 0.907 4 O -0.566 6.566 5 C -0.125 4.125 6 C -0.092 4.092 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.118 4.118 10 S -0.192 6.192 11 C -0.036 4.036 12 H 0.063 0.937 13 C -0.134 4.134 14 C 0.006 3.994 15 C -0.518 4.518 16 H 0.038 0.962 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.242 1.242 23 C -0.090 4.090 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.389 0.611 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.023 0.977 36 H 0.264 0.736 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -19.344 -10.978 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.088 3.912 3 H 0.111 0.889 4 O -0.375 6.375 5 C -0.127 4.127 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.230 4.230 10 S 0.042 5.958 11 C -0.164 4.164 12 H 0.081 0.919 13 C -0.193 4.193 14 C -0.032 4.032 15 C -0.556 4.556 16 H 0.056 0.944 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.767 3.233 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.165 1.165 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.240 0.760 28 H 0.178 0.822 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.805 -18.193 -10.645 21.419 hybrid contribution -1.135 0.075 0.593 1.283 sum -4.940 -18.118 -10.052 21.300 Atomic orbital electron populations 1.22419 0.93886 1.03810 1.02973 1.20701 0.94042 0.95408 0.81049 0.88891 1.86621 1.77592 1.30489 1.42781 1.20732 1.00759 0.95435 0.95782 1.21365 0.97347 0.92881 0.99435 1.21526 0.98591 1.01510 0.91984 1.21792 0.97127 0.91735 0.99803 1.21932 1.06562 0.97047 0.97428 1.86032 1.16919 1.69998 1.22804 1.23176 0.94122 0.99536 0.99603 0.91857 1.22043 1.01805 0.93809 1.01660 1.19413 0.97388 0.92935 0.93487 1.21364 1.45873 0.94146 0.94216 0.94359 1.25939 0.94467 0.94603 1.04095 1.70072 1.49910 1.02696 1.36543 0.85753 0.79685 0.78368 0.79447 1.19636 1.21050 1.16492 1.21431 0.97314 0.99588 0.92801 0.92308 0.90633 0.90446 0.76039 0.82211 0.82002 0.84441 0.90827 0.91954 0.91241 0.94032 0.95921 0.92687 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.52 71.98 0.69 -2.24 16 2 C 0.15 3.05 3.83 29.84 0.11 3.16 16 3 H 0.09 2.21 8.05 -2.38 -0.02 2.19 16 4 O -0.57 -10.61 13.13 -148.98 -1.96 -12.57 16 5 C -0.12 -2.94 5.00 -19.89 -0.10 -3.04 16 6 C -0.09 -1.64 9.33 22.30 0.21 -1.44 16 7 C -0.12 -2.15 10.04 22.25 0.22 -1.93 16 8 C -0.08 -2.12 9.21 22.41 0.21 -1.91 16 9 C -0.12 -3.86 5.22 22.62 0.12 -3.74 16 10 S -0.19 -7.81 20.40 -56.49 -1.15 -8.96 16 11 C -0.04 -1.46 2.73 30.60 0.08 -1.37 16 12 H 0.06 2.66 8.14 -2.39 -0.02 2.65 16 13 C -0.13 -4.04 9.12 71.98 0.66 -3.39 16 14 C 0.01 0.29 3.52 29.85 0.10 0.39 16 15 C -0.52 -30.09 9.09 25.60 0.23 -29.86 16 16 H 0.04 2.48 7.85 -2.91 -0.02 2.46 16 17 C 0.01 0.32 5.47 84.65 0.46 0.78 16 18 N -0.95 -60.80 13.96 21.44 0.30 -60.50 16 19 Si 0.94 44.55 27.47 68.60 1.88 46.43 16 20 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 23 C -0.09 -2.83 9.42 22.41 0.21 -2.62 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.39 3.76 7.38 -74.06 -0.55 3.21 16 28 H 0.16 1.50 6.60 -2.91 -0.02 1.48 16 29 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 30 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.68 7.13 -2.39 -0.02 1.66 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.87 7.20 -2.39 -0.02 1.85 16 35 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 36 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -72.08 320.30 2.73 -69.35 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.45 Total: 13.46 kcal Atomic # 6 Polarization: -50.42 SS G_CDS: 3.21 Total: -47.21 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.30 Total: -60.50 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.96 Total: -12.57 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.15 Total: -8.96 kcal Total: -72.08 2.73 -69.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.192 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds