Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00028 * 2 1 4 4 C 1.38216 * 119.99963 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99862 * 0.02562 * 4 3 2 6 6 S 1.76202 * 119.99472 * 179.97438 * 5 4 3 7 7 O 1.42091 * 103.00234 * 341.14909 * 6 5 4 8 8 C 1.81398 * 102.99971 * 95.00405 * 6 5 4 9 9 H 1.09002 * 109.47231 * 294.99483 * 8 6 5 10 10 C 1.53001 * 109.47311 * 54.99660 * 8 6 5 11 11 C 1.52999 * 109.47051 * 174.99828 * 8 6 5 12 12 C 1.50702 * 109.47522 * 64.99950 * 11 8 6 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38208 * 120.00239 * 0.25571 * 5 4 3 21 21 C 1.50706 * 120.00043 * 179.72209 * 20 5 4 22 22 C 1.38210 * 120.00123 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47106 * 90.00048 * 1 2 3 24 24 H 1.09000 * 109.47340 * 210.00127 * 1 2 3 25 25 H 1.09001 * 109.47529 * 330.00421 * 1 2 3 26 26 H 1.08002 * 119.99723 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99458 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46990 * 299.99864 * 10 8 6 29 29 H 1.08994 * 109.47308 * 60.00042 * 10 8 6 30 30 H 1.09003 * 109.46775 * 180.02562 * 10 8 6 31 31 H 1.09000 * 109.47527 * 304.99549 * 11 8 6 32 32 H 1.09001 * 109.47054 * 184.99639 * 11 8 6 33 33 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 34 34 H 1.09006 * 109.46552 * 90.00168 * 21 20 5 35 35 H 1.08996 * 109.46967 * 209.99657 * 21 20 5 36 36 H 1.08991 * 109.46792 * 330.00203 * 21 20 5 37 37 H 1.08003 * 120.00033 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 16 6.0336 0.0001 0.0005 7 8 6.3533 1.3104 -0.4468 8 6 6.4417 -0.1540 1.7613 9 1 6.1003 0.7344 2.2925 10 6 5.7503 -1.3907 2.3387 11 6 7.9566 -0.2944 1.9233 12 6 8.6303 0.9743 1.4675 13 1 8.0372 1.7981 1.0988 14 6 10.0037 1.0828 1.5204 15 7 10.5920 2.1879 1.1175 16 14 11.0295 -0.3424 2.1576 17 1 11.2162 -0.2011 3.6240 18 1 10.3333 -1.6217 1.8682 19 1 12.3545 -0.3373 1.4871 20 6 3.5806 -1.1969 -0.0053 21 6 4.3341 -2.5020 -0.0117 22 6 2.1980 -1.1969 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1327 -0.0004 27 1 4.1203 2.1327 0.0010 28 1 4.6710 -1.2907 2.2233 29 1 6.0917 -2.2791 1.8076 30 1 5.9952 -1.4830 3.3969 31 1 8.3106 -1.1306 1.3204 32 1 8.1946 -0.4757 2.9714 33 1 11.5585 2.2628 1.1509 34 1 4.5157 -2.8216 1.0145 35 1 3.7451 -3.2591 -0.5292 36 1 5.2865 -2.3691 -0.5247 37 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = -29.364138 kcal Electronic energy + Delta-G solvation = -18181.925573 eV Core-core repulsion = 15436.294256 eV Total energy + Delta-G solvation = -2745.631317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32032 -35.02262 -34.71207 -33.57850 -31.98247 -31.83470 -28.23055 -27.14685 -26.68763 -23.09733 -22.13175 -20.90792 -20.45113 -17.40700 -16.68916 -15.97453 -15.71141 -14.99072 -14.66962 -14.47214 -14.00132 -13.72956 -13.43199 -13.13222 -12.90562 -12.76737 -12.58336 -12.20927 -12.07704 -11.88197 -11.77397 -11.51482 -11.37320 -11.05389 -10.88653 -10.75004 -10.61562 -9.89580 -9.69946 -9.42079 -8.91900 -8.77370 -8.57017 -8.51059 -7.53866 -5.98419 -3.99740 1.12194 1.49181 2.50197 3.30827 3.38234 3.39399 3.40292 3.85330 4.45812 4.61262 4.73816 4.85446 5.01652 5.24747 5.28721 5.33284 5.41960 5.47484 5.56896 5.62783 5.67468 5.74049 5.80458 5.86825 5.93338 6.06035 6.26597 6.34674 6.44118 6.48897 6.57853 6.60394 6.62683 7.07358 7.09873 7.21922 7.74844 8.56903 9.17441 9.60872 11.14803 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.005397 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.877637 B = 5187.035003 C = 5604.353582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.047 4.047 5 C -0.465 4.465 6 S 1.327 4.673 7 O -0.833 6.833 8 C -0.392 4.392 9 H 0.084 0.916 10 C -0.132 4.132 11 C 0.011 3.989 12 C -0.542 4.542 13 H 0.088 0.912 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.872 3.128 17 H -0.278 1.278 18 H -0.261 1.261 19 H -0.286 1.286 20 C -0.007 4.007 21 C -0.143 4.143 22 C -0.144 4.144 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.128 0.872 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.392 -12.468 -2.167 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.165 4.165 4 C -0.065 4.065 5 C -0.559 4.559 6 S 1.523 4.477 7 O -0.828 6.828 8 C -0.509 4.509 9 H 0.102 0.898 10 C -0.190 4.190 11 C -0.027 4.027 12 C -0.580 4.580 13 H 0.106 0.894 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.699 3.301 17 H -0.203 1.203 18 H -0.186 1.186 19 H -0.212 1.212 20 C -0.009 4.009 21 C -0.199 4.199 22 C -0.163 4.163 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.627 -12.274 -2.979 20.880 hybrid contribution -0.355 1.307 1.696 2.170 sum -16.982 -10.967 -1.283 20.256 Atomic orbital electron populations 1.20822 0.91426 1.02684 1.02277 1.19985 0.95748 0.93396 0.97085 1.21078 0.94424 0.97401 1.03641 1.21174 0.94094 0.98100 0.93178 1.28299 1.21769 0.96046 1.09806 1.69323 0.79458 1.08077 0.90802 1.93122 1.76573 1.40251 1.72868 1.27305 1.04189 1.02035 1.17407 0.89752 1.21818 0.99104 0.96660 1.01443 1.19323 0.87565 0.98232 0.97617 1.21475 0.92668 1.00680 1.43170 0.89354 1.25020 0.97822 0.95476 0.94675 1.69943 1.09812 1.26406 1.47205 0.86896 0.80003 0.83849 0.79325 1.20338 1.18575 1.21220 1.19499 0.93254 0.93977 0.94133 1.21354 1.00713 0.93816 1.04057 1.20951 0.93825 0.97276 1.04257 0.91107 0.91521 0.91619 0.86410 0.85444 0.92847 0.91560 0.92594 0.95686 0.95840 0.92747 0.89139 0.90911 0.90171 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.01 36.00 0.36 -0.65 16 2 C -0.06 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.15 -2.08 9.70 -39.58 -0.38 -2.46 16 4 C -0.05 -0.80 9.45 -39.58 -0.37 -1.17 16 5 C -0.47 -7.52 4.98 -39.59 -0.20 -7.72 16 6 S 1.33 24.62 10.99 -107.50 -1.18 23.44 16 7 O -0.83 -21.20 15.13 -35.23 -0.53 -21.73 16 8 C -0.39 -7.65 2.81 -26.73 -0.08 -7.72 16 9 H 0.08 1.84 8.14 -51.92 -0.42 1.42 16 10 C -0.13 -1.89 7.29 37.16 0.27 -1.62 16 11 C 0.01 0.26 3.51 -27.88 -0.10 0.16 16 12 C -0.54 -15.90 8.95 -34.44 -0.31 -16.21 16 13 H 0.09 2.95 6.59 -52.49 -0.35 2.60 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -28.64 13.96 55.43 0.77 -27.86 16 16 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.01 -0.09 4.77 -104.62 -0.50 -0.59 16 21 C -0.14 -1.32 8.27 36.01 0.30 -1.02 16 22 C -0.14 -1.69 9.36 -39.58 -0.37 -2.06 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.13 2.44 7.34 -52.49 -0.39 2.06 16 28 H 0.05 0.69 5.59 -51.93 -0.29 0.40 16 29 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 32 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 33 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 34 H 0.09 0.74 5.32 -51.93 -0.28 0.47 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.08 0.67 6.76 -51.93 -0.35 0.32 16 37 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -37.34 304.91 -8.41 -45.75 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.30 Total: -0.50 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: -2.09 Total: -40.39 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.77 Total: -27.86 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.53 Total: -21.73 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 24.62 SS G_CDS: -1.18 Total: 23.44 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -37.34 -8.41 -45.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.383 kcal (2) G-P(sol) polarization free energy of solvation -37.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds