Wall clock time and date at job start Mon Mar 30 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38260 * 120.00028 * 2 1 4 4 C 1.38216 * 119.99963 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99862 * 0.02562 * 4 3 2 6 6 S 1.76202 * 119.99472 * 179.97438 * 5 4 3 7 7 O 1.42091 * 103.00234 * 341.14909 * 6 5 4 8 8 C 1.81398 * 102.99971 * 95.00405 * 6 5 4 9 9 H 1.09002 * 109.47231 * 294.99483 * 8 6 5 10 10 C 1.53001 * 109.47311 * 54.99660 * 8 6 5 11 11 C 1.52999 * 109.47051 * 174.99828 * 8 6 5 12 12 C 1.50702 * 109.47522 * 64.99950 * 11 8 6 13 13 H 1.08002 * 119.99446 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00072 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99826 * 179.72119 * 14 12 11 16 16 Si 1.86800 * 120.00406 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.46758 * 269.72576 * 16 14 12 18 18 H 1.48499 * 109.47026 * 29.72423 * 16 14 12 19 19 H 1.48496 * 109.47474 * 149.72459 * 16 14 12 20 20 C 1.38208 * 120.00239 * 0.25571 * 5 4 3 21 21 C 1.50706 * 120.00043 * 179.72209 * 20 5 4 22 22 C 1.38210 * 120.00123 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47106 * 90.00048 * 1 2 3 24 24 H 1.09000 * 109.47340 * 210.00127 * 1 2 3 25 25 H 1.09001 * 109.47529 * 330.00421 * 1 2 3 26 26 H 1.08002 * 119.99723 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.99458 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.46990 * 299.99864 * 10 8 6 29 29 H 1.08994 * 109.47308 * 60.00042 * 10 8 6 30 30 H 1.09003 * 109.46775 * 180.02562 * 10 8 6 31 31 H 1.09000 * 109.47527 * 304.99549 * 11 8 6 32 32 H 1.09001 * 109.47054 * 184.99639 * 11 8 6 33 33 H 0.96999 * 120.00128 * 180.27192 * 15 14 12 34 34 H 1.09006 * 109.46552 * 90.00168 * 21 20 5 35 35 H 1.08996 * 109.46967 * 209.99657 * 21 20 5 36 36 H 1.08991 * 109.46792 * 330.00203 * 21 20 5 37 37 H 1.08003 * 120.00033 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0000 0.0005 6 16 6.0336 0.0001 0.0005 7 8 6.3533 1.3104 -0.4468 8 6 6.4417 -0.1540 1.7613 9 1 6.1003 0.7344 2.2925 10 6 5.7503 -1.3907 2.3387 11 6 7.9566 -0.2944 1.9233 12 6 8.6303 0.9743 1.4675 13 1 8.0372 1.7981 1.0988 14 6 10.0037 1.0828 1.5204 15 7 10.5920 2.1879 1.1175 16 14 11.0295 -0.3424 2.1576 17 1 11.2162 -0.2011 3.6240 18 1 10.3333 -1.6217 1.8682 19 1 12.3545 -0.3373 1.4871 20 6 3.5806 -1.1969 -0.0053 21 6 4.3341 -2.5020 -0.0117 22 6 2.1980 -1.1969 0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.6582 2.1327 -0.0004 27 1 4.1203 2.1327 0.0010 28 1 4.6710 -1.2907 2.2233 29 1 6.0917 -2.2791 1.8076 30 1 5.9952 -1.4830 3.3969 31 1 8.3106 -1.1306 1.3204 32 1 8.1946 -0.4757 2.9714 33 1 11.5585 2.2628 1.1509 34 1 4.5157 -2.8216 1.0145 35 1 3.7451 -3.2591 -0.5292 36 1 5.2865 -2.3691 -0.5247 37 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:13 Heat of formation + Delta-G solvation = -56.091926 kcal Electronic energy + Delta-G solvation = -18183.084577 eV Core-core repulsion = 15436.294256 eV Total energy + Delta-G solvation = -2746.790321 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37347 -36.74831 -36.44089 -34.70872 -33.94849 -32.90928 -29.90203 -28.08506 -27.65948 -24.90074 -23.25041 -22.38178 -21.69818 -18.99372 -18.65078 -17.43244 -16.84249 -16.53317 -16.21118 -15.76347 -15.28544 -15.00622 -14.61579 -14.51497 -14.11930 -14.01182 -13.81941 -13.58794 -13.44963 -13.07435 -12.88285 -12.81283 -12.48900 -12.47211 -12.36233 -12.04740 -11.95341 -11.70671 -11.55367 -11.32745 -10.84138 -10.63530 -9.90965 -9.63440 -9.10191 -8.26188 -6.35355 -0.03682 0.40431 1.09292 1.37953 1.42520 1.54682 2.02271 2.39129 2.70591 3.05113 3.15329 3.82980 3.92103 3.99852 4.06616 4.30494 4.37096 4.46288 4.62092 4.68085 4.73028 4.81720 4.90835 5.00695 5.03363 5.06265 5.07268 5.14343 5.16568 5.34428 5.38086 5.44474 5.51622 5.55913 5.58892 5.63821 6.07592 6.29861 6.80777 7.29924 8.92434 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036266 B = 0.005397 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.877637 B = 5187.035003 C = 5604.353582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.160 4.160 4 C -0.083 4.083 5 C -0.483 4.483 6 S 1.364 4.636 7 O -0.924 6.924 8 C -0.391 4.391 9 H 0.041 0.959 10 C -0.127 4.127 11 C 0.010 3.990 12 C -0.555 4.555 13 H 0.021 0.979 14 C -0.004 4.004 15 N -0.960 5.960 16 Si 0.956 3.044 17 H -0.269 1.269 18 H -0.214 1.214 19 H -0.285 1.285 20 C 0.004 3.996 21 C -0.154 4.154 22 C -0.140 4.140 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 -18.364 -1.258 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.179 4.179 4 C -0.103 4.103 5 C -0.580 4.580 6 S 1.565 4.435 7 O -0.920 6.920 8 C -0.510 4.510 9 H 0.060 0.940 10 C -0.185 4.185 11 C -0.029 4.029 12 C -0.593 4.593 13 H 0.040 0.960 14 C -0.200 4.200 15 N -0.601 5.601 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.136 1.136 19 H -0.211 1.211 20 C 0.002 3.998 21 C -0.210 4.210 22 C -0.158 4.158 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.900 -18.173 -2.072 26.301 hybrid contribution 0.104 3.225 1.380 3.509 sum -18.796 -14.948 -0.692 24.025 Atomic orbital electron populations 1.20916 0.88366 1.04144 1.03614 1.20488 0.97928 0.92568 0.94420 1.21231 0.93039 0.99410 1.04249 1.21029 0.95771 0.97025 0.96444 1.27693 1.19219 0.97524 1.13577 1.67917 0.80806 1.05286 0.89485 1.92999 1.80052 1.43666 1.75251 1.27272 1.02678 1.03302 1.17718 0.94024 1.21902 0.99525 0.94992 1.02069 1.19340 0.89404 0.95794 0.98329 1.21789 0.92966 1.01712 1.42814 0.96041 1.26298 0.99488 0.99409 0.94798 1.70169 1.10364 1.29952 1.49582 0.85592 0.77545 0.80654 0.78516 1.19461 1.13566 1.21086 1.19972 0.94238 0.93914 0.91659 1.21610 1.01192 0.92275 1.05908 1.21501 0.93368 0.98777 1.02156 0.89624 0.89064 0.91261 0.85515 0.90077 0.91307 0.87302 0.91823 0.92284 0.94714 0.92611 0.87129 0.87316 0.89637 0.81501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.23 0.71 -0.78 16 2 C -0.05 -1.15 5.88 -19.87 -0.12 -1.27 16 3 C -0.16 -4.62 9.70 22.27 0.22 -4.40 16 4 C -0.08 -3.11 9.45 22.27 0.21 -2.90 16 5 C -0.48 -15.89 4.98 22.27 0.11 -15.78 16 6 S 1.36 53.27 10.99 -56.49 -0.62 52.65 16 7 O -0.92 -52.64 15.13 -148.98 -2.25 -54.89 16 8 C -0.39 -15.53 2.81 30.59 0.09 -15.44 16 9 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 10 C -0.13 -3.20 7.29 71.98 0.52 -2.67 16 11 C 0.01 0.44 3.51 29.85 0.10 0.55 16 12 C -0.55 -34.43 8.95 25.60 0.23 -34.20 16 13 H 0.02 1.58 6.59 -2.91 -0.02 1.56 16 14 C 0.00 -0.26 5.47 84.65 0.46 0.20 16 15 N -0.96 -65.18 13.96 21.45 0.30 -64.89 16 16 Si 0.96 43.78 27.47 68.60 1.88 45.67 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.21 -8.12 6.54 99.48 0.65 -7.47 16 19 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 20 C 0.00 0.08 4.77 -19.86 -0.09 -0.01 16 21 C -0.15 -1.99 8.27 71.24 0.59 -1.40 16 22 C -0.14 -2.61 9.36 22.27 0.21 -2.40 16 23 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 25 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 26 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.08 3.66 7.34 -2.91 -0.02 3.64 16 28 H 0.07 1.53 5.59 -2.39 -0.01 1.52 16 29 H 0.11 1.83 6.69 -2.39 -0.02 1.81 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 2.33 7.20 -2.39 -0.02 2.31 16 32 H 0.03 1.52 7.57 -2.39 -0.02 1.51 16 33 H 0.27 16.58 8.31 -92.71 -0.77 15.81 16 34 H 0.11 1.06 5.32 -2.38 -0.01 1.05 16 35 H 0.11 0.73 8.09 -2.39 -0.02 0.71 16 36 H 0.08 1.05 6.76 -2.39 -0.02 1.04 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -94.51 304.91 3.55 -90.96 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 1.00 Total: 11.02 kcal Atomic # 6 Polarization: -83.75 SS G_CDS: 3.24 Total: -80.51 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 0.30 Total: -64.89 kcal Atomic # 8 Polarization: -52.64 SS G_CDS: -2.25 Total: -54.89 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.67 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.62 Total: 52.65 kcal Total: -94.51 3.55 -90.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.864 kcal (2) G-P(sol) polarization free energy of solvation -94.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds