Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00213 * 2 1 4 4 C 1.38211 * 119.99788 * 180.28358 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2 6 6 S 1.76201 * 120.00171 * 180.27951 * 5 4 3 7 7 O 1.42098 * 103.00051 * 341.15179 * 6 5 4 8 8 C 1.81406 * 102.99963 * 95.00225 * 6 5 4 9 9 H 1.09000 * 109.46811 * 64.99768 * 8 6 5 10 10 C 1.53005 * 109.46845 * 305.00376 * 8 6 5 11 11 C 1.52997 * 109.47262 * 185.00154 * 8 6 5 12 12 C 1.50700 * 109.47244 * 294.99984 * 11 8 6 13 13 H 1.08009 * 119.99874 * 0.02562 * 12 11 8 14 14 C 1.37870 * 120.00085 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00222 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47168 * 59.99717 * 16 14 12 18 18 H 1.48499 * 109.47393 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47276 * 300.00066 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.50701 * 120.00231 * 180.02562 * 20 5 4 22 22 C 1.38212 * 119.99687 * 179.72372 * 2 1 3 23 23 H 1.08998 * 109.46800 * 270.28143 * 1 2 3 24 24 H 1.09007 * 109.47085 * 30.27480 * 1 2 3 25 25 H 1.08997 * 109.47544 * 150.28187 * 1 2 3 26 26 H 1.07998 * 119.99812 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.74545 * 4 3 2 28 28 H 1.08990 * 109.46861 * 299.99522 * 10 8 6 29 29 H 1.08992 * 109.47146 * 60.00045 * 10 8 6 30 30 H 1.09006 * 109.46419 * 179.97438 * 10 8 6 31 31 H 1.08999 * 109.46931 * 55.00316 * 11 8 6 32 32 H 1.08996 * 109.47175 * 175.00126 * 11 8 6 33 33 H 0.97002 * 120.00200 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.46845 * 89.99850 * 21 20 5 35 35 H 1.08997 * 109.46777 * 209.99863 * 21 20 5 36 36 H 1.08999 * 109.46887 * 329.99904 * 21 20 5 37 37 H 1.08001 * 120.00342 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0059 5 6 4.2717 -0.0001 -0.0006 6 16 6.0337 -0.0002 -0.0007 7 8 6.3534 1.3080 -0.4539 8 6 6.4418 -0.1464 1.7608 9 1 6.1003 -1.1119 2.1340 10 6 5.7504 0.9747 2.5393 11 6 7.9567 -0.0355 1.9443 12 6 8.6303 -1.2087 1.2803 13 1 8.0372 -1.9583 0.7773 14 6 10.0037 -1.3247 1.3139 15 7 10.7260 -0.4118 1.9259 16 14 10.8388 -2.7786 0.4902 17 1 10.5139 -2.7802 -0.9588 18 1 12.3091 -2.6711 0.6683 19 1 10.3570 -4.0407 1.1068 20 6 3.5806 -1.1971 0.0052 21 6 4.3340 -2.5022 0.0117 22 6 2.1980 -1.1970 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0101 28 1 6.0919 1.9402 2.1661 29 1 4.6712 0.8957 2.4086 30 1 5.9953 0.8866 3.5978 31 1 8.3107 0.8907 1.4916 32 1 8.1948 -0.0342 3.0079 33 1 11.6923 -0.4936 1.9499 34 1 4.5156 -2.8118 1.0409 35 1 3.7449 -3.2643 -0.4985 36 1 5.2865 -2.3744 -0.5027 37 1 1.6580 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = -40.572558 kcal Electronic energy + Delta-G solvation = -18112.943485 eV Core-core repulsion = 15366.826134 eV Total energy + Delta-G solvation = -2746.117350 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.27161 -35.08495 -34.47856 -33.52329 -32.10894 -31.78455 -27.67057 -27.29006 -26.50724 -23.33708 -22.14451 -20.96335 -20.35471 -17.45106 -16.41881 -16.13515 -15.50871 -15.04218 -14.68841 -14.43785 -14.04285 -13.65774 -13.29037 -13.07447 -13.04837 -12.71307 -12.30964 -12.02430 -11.92811 -11.84137 -11.54378 -11.48975 -11.36818 -11.23200 -10.89995 -10.78964 -10.58944 -10.30817 -9.60420 -9.22909 -9.19220 -8.75782 -8.55418 -8.44095 -7.44885 -6.06494 -4.12966 1.14284 1.50983 2.53418 3.31283 3.36845 3.37191 3.42646 3.87562 4.40130 4.55509 4.76698 4.86217 5.04213 5.26796 5.30306 5.34057 5.43199 5.51668 5.68216 5.73479 5.77039 5.81612 5.85578 5.96037 6.02029 6.08613 6.31371 6.46013 6.46996 6.59147 6.62214 6.67467 6.82711 7.11280 7.56909 7.62315 7.89565 8.24831 8.93348 9.53064 11.04444 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031880 B = 0.005409 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.075209 B = 5175.035808 C = 5583.629181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.148 4.148 4 C -0.046 4.046 5 C -0.463 4.463 6 S 1.333 4.667 7 O -0.861 6.861 8 C -0.391 4.391 9 H 0.108 0.892 10 C -0.140 4.140 11 C 0.044 3.956 12 C -0.539 4.539 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.890 3.110 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.007 4.007 21 C -0.136 4.136 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 -4.336 -3.608 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.062 4.062 3 C -0.167 4.167 4 C -0.065 4.065 5 C -0.557 4.557 6 S 1.532 4.468 7 O -0.856 6.856 8 C -0.510 4.510 9 H 0.127 0.873 10 C -0.198 4.198 11 C 0.006 3.994 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.008 4.008 21 C -0.193 4.193 22 C -0.162 4.162 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.500 -4.184 -4.353 17.570 hybrid contribution -0.456 1.025 0.996 1.501 sum -16.956 -3.158 -3.357 17.571 Atomic orbital electron populations 1.20821 0.91441 1.02662 1.02266 1.19978 0.95731 0.93393 0.97144 1.21052 0.94412 0.97349 1.03921 1.21104 0.94021 0.97882 0.93533 1.28240 1.21675 0.96067 1.09764 1.69833 0.78933 1.06719 0.91362 1.92976 1.77725 1.41331 1.73617 1.27457 1.05799 1.02744 1.14964 0.87338 1.21801 0.98508 0.98447 1.01076 1.18879 0.84310 0.97765 0.98487 1.21237 0.91920 1.08524 1.36083 0.91648 1.25029 0.97570 0.96229 0.95131 1.69957 1.06110 1.34190 1.42369 0.86678 0.78504 0.82804 0.80296 1.19650 1.21281 1.19876 1.19565 0.93303 0.94123 0.93834 1.21085 1.00800 0.93598 1.03815 1.20965 0.93829 0.97309 1.04089 0.91158 0.91641 0.91487 0.86489 0.85684 0.92814 0.93738 0.92583 0.95994 0.95433 0.92673 0.89721 0.90772 0.89896 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.06 -0.77 5.88 -104.62 -0.62 -1.39 16 3 C -0.15 -2.08 9.70 -39.58 -0.38 -2.46 16 4 C -0.05 -0.78 8.68 -39.58 -0.34 -1.12 16 5 C -0.46 -7.63 4.66 -39.58 -0.18 -7.81 16 6 S 1.33 25.37 10.62 -107.50 -1.14 24.23 16 7 O -0.86 -20.83 16.66 -35.23 -0.59 -21.42 16 8 C -0.39 -7.94 2.81 -26.73 -0.08 -8.01 16 9 H 0.11 1.96 8.14 -51.92 -0.42 1.53 16 10 C -0.14 -2.71 8.87 37.16 0.33 -2.38 16 11 C 0.04 1.12 4.45 -27.88 -0.12 0.99 16 12 C -0.54 -14.05 8.53 -34.44 -0.29 -14.34 16 13 H 0.07 1.50 7.60 -52.48 -0.40 1.10 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 16 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 C -0.01 -0.10 5.88 -104.62 -0.62 -0.71 16 21 C -0.14 -1.47 9.56 36.01 0.34 -1.13 16 22 C -0.14 -1.76 9.36 -39.58 -0.37 -2.13 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.13 2.28 7.34 -52.49 -0.39 1.89 16 28 H 0.05 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.04 0.77 6.62 -51.93 -0.34 0.43 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 36 H 0.08 0.86 6.76 -51.93 -0.35 0.51 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -33.49 319.23 -8.95 -42.43 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.68 Total: -0.39 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: -2.07 Total: -39.51 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.59 Total: -21.42 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 25.37 SS G_CDS: -1.14 Total: 24.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.49 -8.95 -42.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.861 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds