Wall clock time and date at job start Mon Mar 30 2020 06:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38259 * 120.00213 * 2 1 4 4 C 1.38211 * 119.99788 * 180.28358 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.45940 * 4 3 2 6 6 S 1.76201 * 120.00171 * 180.27951 * 5 4 3 7 7 O 1.42098 * 103.00051 * 341.15179 * 6 5 4 8 8 C 1.81406 * 102.99963 * 95.00225 * 6 5 4 9 9 H 1.09000 * 109.46811 * 64.99768 * 8 6 5 10 10 C 1.53005 * 109.46845 * 305.00376 * 8 6 5 11 11 C 1.52997 * 109.47262 * 185.00154 * 8 6 5 12 12 C 1.50700 * 109.47244 * 294.99984 * 11 8 6 13 13 H 1.08009 * 119.99874 * 0.02562 * 12 11 8 14 14 C 1.37870 * 120.00085 * 179.97438 * 12 11 8 15 15 N 1.31514 * 120.00222 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47168 * 59.99717 * 16 14 12 18 18 H 1.48499 * 109.47393 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47276 * 300.00066 * 16 14 12 20 20 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 21 21 C 1.50701 * 120.00231 * 180.02562 * 20 5 4 22 22 C 1.38212 * 119.99687 * 179.72372 * 2 1 3 23 23 H 1.08998 * 109.46800 * 270.28143 * 1 2 3 24 24 H 1.09007 * 109.47085 * 30.27480 * 1 2 3 25 25 H 1.08997 * 109.47544 * 150.28187 * 1 2 3 26 26 H 1.07998 * 119.99812 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.00200 * 179.74545 * 4 3 2 28 28 H 1.08990 * 109.46861 * 299.99522 * 10 8 6 29 29 H 1.08992 * 109.47146 * 60.00045 * 10 8 6 30 30 H 1.09006 * 109.46419 * 179.97438 * 10 8 6 31 31 H 1.08999 * 109.46931 * 55.00316 * 11 8 6 32 32 H 1.08996 * 109.47175 * 175.00126 * 11 8 6 33 33 H 0.97002 * 120.00200 * 179.97438 * 15 14 12 34 34 H 1.08998 * 109.46845 * 89.99850 * 21 20 5 35 35 H 1.08997 * 109.46777 * 209.99863 * 21 20 5 36 36 H 1.08999 * 109.46887 * 329.99904 * 21 20 5 37 37 H 1.08001 * 120.00342 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0059 5 6 4.2717 -0.0001 -0.0006 6 16 6.0337 -0.0002 -0.0007 7 8 6.3534 1.3080 -0.4539 8 6 6.4418 -0.1464 1.7608 9 1 6.1003 -1.1119 2.1340 10 6 5.7504 0.9747 2.5393 11 6 7.9567 -0.0355 1.9443 12 6 8.6303 -1.2087 1.2803 13 1 8.0372 -1.9583 0.7773 14 6 10.0037 -1.3247 1.3139 15 7 10.7260 -0.4118 1.9259 16 14 10.8388 -2.7786 0.4902 17 1 10.5139 -2.7802 -0.9588 18 1 12.3091 -2.6711 0.6683 19 1 10.3570 -4.0407 1.1068 20 6 3.5806 -1.1971 0.0052 21 6 4.3340 -2.5022 0.0117 22 6 2.1980 -1.1970 0.0058 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3634 -0.8925 -0.5094 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 -0.0101 28 1 6.0919 1.9402 2.1661 29 1 4.6712 0.8957 2.4086 30 1 5.9953 0.8866 3.5978 31 1 8.3107 0.8907 1.4916 32 1 8.1948 -0.0342 3.0079 33 1 11.6923 -0.4936 1.9499 34 1 4.5156 -2.8118 1.0409 35 1 3.7449 -3.2643 -0.4985 36 1 5.2865 -2.3744 -0.5027 37 1 1.6580 -2.1323 0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:18 Heat of formation + Delta-G solvation = -61.548425 kcal Electronic energy + Delta-G solvation = -18113.853067 eV Core-core repulsion = 15366.826134 eV Total energy + Delta-G solvation = -2747.026932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.32511 -36.82478 -36.34055 -34.52186 -33.97757 -32.90364 -29.50273 -28.17029 -27.55150 -25.28307 -23.28495 -22.45105 -21.63041 -18.82585 -18.47617 -17.57995 -16.64113 -16.59097 -16.39364 -15.69788 -15.14843 -14.86504 -14.72222 -14.21346 -14.01471 -13.91957 -13.80389 -13.64977 -13.37015 -13.30866 -12.94138 -12.80566 -12.57457 -12.52185 -12.42438 -12.33023 -12.07872 -11.93056 -11.49271 -11.17149 -10.85931 -10.50729 -9.87867 -9.62123 -9.02963 -8.14204 -6.28639 -0.02253 0.43366 1.08669 1.52296 1.56987 1.62989 2.01128 2.49597 2.72225 3.02467 3.21777 3.85304 3.93990 4.01676 4.07385 4.15572 4.38757 4.39952 4.47123 4.68404 4.75312 4.78683 4.82825 4.91340 4.99453 5.00833 5.04685 5.10149 5.17665 5.36993 5.44210 5.47063 5.52847 5.57580 5.60961 5.81696 6.08493 6.17109 6.88597 7.43547 8.98686 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031880 B = 0.005409 C = 0.005013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.075209 B = 5175.035808 C = 5583.629181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.159 4.159 4 C -0.073 4.073 5 C -0.482 4.482 6 S 1.364 4.636 7 O -0.926 6.926 8 C -0.393 4.393 9 H 0.140 0.860 10 C -0.135 4.135 11 C 0.049 3.951 12 C -0.546 4.546 13 H 0.101 0.899 14 C -0.003 4.003 15 N -0.941 5.941 16 Si 0.964 3.036 17 H -0.254 1.254 18 H -0.296 1.296 19 H -0.251 1.251 20 C -0.002 4.002 21 C -0.146 4.146 22 C -0.142 4.142 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.093 0.907 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.061 0.939 31 H -0.029 1.029 32 H -0.002 1.002 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.477 -8.020 -4.427 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.178 4.178 4 C -0.092 4.092 5 C -0.580 4.580 6 S 1.566 4.434 7 O -0.922 6.922 8 C -0.510 4.510 9 H 0.158 0.842 10 C -0.193 4.193 11 C 0.011 3.989 12 C -0.584 4.584 13 H 0.119 0.881 14 C -0.201 4.201 15 N -0.581 5.581 16 Si 0.787 3.213 17 H -0.178 1.178 18 H -0.222 1.222 19 H -0.175 1.175 20 C -0.003 4.003 21 C -0.203 4.203 22 C -0.160 4.160 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.150 0.850 27 H 0.111 0.889 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.080 0.920 31 H -0.011 1.011 32 H 0.017 0.983 33 H 0.071 0.929 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.686 -7.870 -5.167 21.821 hybrid contribution 0.315 2.202 1.262 2.557 sum -19.371 -5.668 -3.905 20.558 Atomic orbital electron populations 1.20914 0.88457 1.04177 1.03514 1.20476 0.97874 0.92621 0.94418 1.21262 0.93218 0.99252 1.04038 1.21013 0.95509 0.96881 0.95792 1.27633 1.19069 0.97594 1.13664 1.68922 0.80681 1.04580 0.89249 1.92877 1.80626 1.43885 1.74799 1.27409 1.02113 1.04523 1.16970 0.84177 1.21738 0.99657 0.96771 1.01135 1.18680 0.88193 0.95825 0.96172 1.21816 0.92454 1.08767 1.35322 0.88147 1.26151 0.98697 0.99435 0.95827 1.70154 1.06276 1.36980 1.44724 0.85507 0.76501 0.79324 0.79987 1.17794 1.22219 1.17464 1.19946 0.94345 0.93962 0.92057 1.21300 1.01089 0.92796 1.05103 1.21443 0.93256 0.98878 1.02435 0.89819 0.90888 0.89357 0.84997 0.88908 0.95729 0.91537 0.91980 1.01062 0.98328 0.92937 0.88471 0.87428 0.89949 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 71.24 0.71 -0.75 16 2 C -0.05 -1.12 5.88 -19.87 -0.12 -1.24 16 3 C -0.16 -4.21 9.70 22.27 0.22 -3.99 16 4 C -0.07 -2.47 8.68 22.27 0.19 -2.28 16 5 C -0.48 -15.53 4.66 22.27 0.10 -15.43 16 6 S 1.36 53.04 10.62 -56.49 -0.60 52.44 16 7 O -0.93 -47.86 16.66 -148.98 -2.48 -50.35 16 8 C -0.39 -16.22 2.81 30.59 0.09 -16.14 16 9 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 10 C -0.14 -5.42 8.87 71.98 0.64 -4.78 16 11 C 0.05 2.65 4.45 29.85 0.13 2.78 16 12 C -0.55 -28.66 8.53 25.60 0.22 -28.44 16 13 H 0.10 4.41 7.60 -2.91 -0.02 4.39 16 14 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 15 N -0.94 -57.73 13.29 21.44 0.28 -57.44 16 16 Si 0.96 41.15 29.54 68.60 2.03 43.17 16 17 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 20 C 0.00 -0.04 5.88 -19.86 -0.12 -0.16 16 21 C -0.15 -2.52 9.56 71.24 0.68 -1.84 16 22 C -0.14 -2.80 9.36 22.27 0.21 -2.59 16 23 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 25 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 26 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 27 H 0.09 3.67 7.34 -2.91 -0.02 3.65 16 28 H 0.02 1.08 8.10 -2.39 -0.02 1.07 16 29 H 0.07 2.34 6.62 -2.39 -0.02 2.33 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 31 H -0.03 -1.83 8.14 -2.39 -0.02 -1.85 16 32 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 36 H 0.08 1.44 6.76 -2.39 -0.02 1.42 16 37 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -78.57 319.23 3.68 -74.89 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.03 Total: 11.87 kcal Atomic # 6 Polarization: -78.00 SS G_CDS: 3.42 Total: -74.57 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.28 Total: -57.44 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -2.48 Total: -50.35 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 53.04 SS G_CDS: -0.60 Total: 52.44 kcal Total: -78.57 3.68 -74.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.337 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds