Wall clock time and date at job start Mon Mar 30 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 119.99938 * 2 1 4 4 C 1.38217 * 119.99650 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00274 * 0.02562 * 4 3 2 6 6 S 1.76200 * 120.00240 * 180.02562 * 5 4 3 7 7 O 1.42098 * 103.00047 * 203.85426 * 6 5 4 8 8 C 1.81392 * 102.99801 * 90.00084 * 6 5 4 9 9 H 1.08996 * 109.47469 * 294.99816 * 8 6 5 10 10 C 1.52994 * 109.47215 * 55.00318 * 8 6 5 11 11 C 1.53001 * 109.46995 * 175.00074 * 8 6 5 12 12 C 1.50703 * 109.47195 * 64.99911 * 11 8 6 13 13 H 1.07997 * 119.99982 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99872 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00174 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99660 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46957 * 60.00202 * 16 14 12 18 18 H 1.48496 * 109.46776 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47067 * 299.99783 * 16 14 12 20 20 C 1.38212 * 119.99580 * 359.74597 * 5 4 3 21 21 C 1.38214 * 119.99714 * 179.97438 * 2 1 3 22 22 C 1.50703 * 120.00023 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47362 * 270.02244 * 1 2 3 24 24 H 1.09003 * 109.47180 * 30.01946 * 1 2 3 25 25 H 1.09000 * 109.47415 * 150.01619 * 1 2 3 26 26 H 1.07994 * 120.00426 * 0.02562 * 3 2 1 27 27 H 1.08001 * 119.99823 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46981 * 299.99632 * 10 8 6 29 29 H 1.09003 * 109.47661 * 59.99540 * 10 8 6 30 30 H 1.08999 * 109.47109 * 179.97438 * 10 8 6 31 31 H 1.08999 * 109.47074 * 184.99986 * 11 8 6 32 32 H 1.08997 * 109.47180 * 305.00144 * 11 8 6 33 33 H 0.97002 * 120.00061 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.00026 * 180.26820 * 20 5 4 35 35 H 1.09002 * 109.47152 * 90.00127 * 22 21 2 36 36 H 1.09001 * 109.46980 * 330.00228 * 22 21 2 37 37 H 1.09004 * 109.47113 * 210.00208 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 16 6.0337 -0.0002 0.0019 7 8 6.3538 -1.2663 -0.5584 8 6 6.4403 -0.0011 1.7697 9 1 6.0986 0.9301 2.2216 10 6 5.7484 -1.1830 2.4516 11 6 7.9551 -0.1269 1.9445 12 6 8.6293 1.0974 1.3809 13 1 8.0366 1.8865 0.9423 14 6 10.0027 1.2105 1.4261 15 7 10.7243 0.2503 1.9616 16 14 10.8382 2.7285 0.7281 17 1 10.3550 3.9344 1.4475 18 1 12.3084 2.6062 0.8977 19 1 10.5156 2.8511 -0.7162 20 6 3.5806 -1.1970 0.0053 21 6 2.1980 -1.1970 0.0005 22 6 1.4444 -2.5021 0.0017 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1325 0.0010 28 1 4.6692 -1.0933 2.3271 29 1 6.0901 -2.1142 1.9997 30 1 5.9931 -1.1837 3.5137 31 1 8.1923 -0.2168 3.0045 32 1 8.3095 -1.0122 1.4166 33 1 11.6905 0.3297 1.9930 34 1 4.1205 -2.1324 0.0097 35 1 1.2624 -2.8174 -1.0257 36 1 0.4922 -2.3713 0.5158 37 1 2.0337 -3.2614 0.5159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695890111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:21 Heat of formation + Delta-G solvation = -39.929382 kcal Electronic energy + Delta-G solvation = -17894.805736 eV Core-core repulsion = 15148.716276 eV Total energy + Delta-G solvation = -2746.089460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.37654 -35.05521 -34.44263 -33.36650 -32.19264 -31.91525 -27.88795 -27.25763 -26.38829 -23.33392 -22.10086 -21.12667 -20.39267 -17.20066 -16.40984 -16.16514 -15.63707 -15.16717 -14.72509 -14.42279 -14.26244 -13.68346 -13.20896 -12.99342 -12.94442 -12.73310 -12.33472 -12.15100 -12.01496 -11.92539 -11.63753 -11.50056 -11.29920 -11.20894 -10.91116 -10.78432 -10.58212 -10.29965 -9.59666 -9.22390 -9.18568 -8.74412 -8.55242 -8.43534 -7.47088 -6.05855 -4.12189 1.14682 1.49658 2.52902 3.32124 3.37508 3.38095 3.42700 3.84542 4.40994 4.58048 4.78998 4.82628 5.00239 5.20071 5.30925 5.33160 5.41432 5.48489 5.53212 5.68442 5.71064 5.77078 5.80939 5.84107 6.01927 6.12868 6.20154 6.42073 6.47122 6.54244 6.63457 6.67116 6.83686 7.10051 7.57780 7.62973 7.90359 8.25716 8.94327 9.53853 11.05080 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.004881 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.583488 B = 5734.931347 C = 6087.587469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.138 4.138 4 C -0.049 4.049 5 C -0.456 4.456 6 S 1.335 4.665 7 O -0.858 6.858 8 C -0.392 4.392 9 H 0.109 0.891 10 C -0.141 4.141 11 C 0.044 3.956 12 C -0.539 4.539 13 H 0.066 0.934 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.271 1.271 20 C -0.050 4.050 21 C -0.109 4.109 22 C -0.114 4.114 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.135 0.865 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.475 2.599 -3.441 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.157 4.157 4 C -0.068 4.068 5 C -0.550 4.550 6 S 1.533 4.467 7 O -0.854 6.854 8 C -0.511 4.511 9 H 0.127 0.873 10 C -0.199 4.199 11 C 0.006 3.994 12 C -0.578 4.578 13 H 0.084 0.916 14 C -0.140 4.140 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.069 4.069 21 C -0.110 4.110 22 C -0.171 4.171 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.153 0.847 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.708 2.508 -4.192 18.370 hybrid contribution -0.339 -0.957 0.922 1.372 sum -18.047 1.550 -3.269 18.406 Atomic orbital electron populations 1.20850 0.91540 1.02713 1.02233 1.19843 0.95671 0.92915 0.98296 1.21084 0.94585 0.97184 1.02837 1.20850 0.93771 0.96938 0.95228 1.28456 1.21822 0.96517 1.08231 1.69922 0.78706 1.08986 0.89116 1.92989 1.77718 1.44928 1.69722 1.27473 1.05772 1.02253 1.15587 0.87288 1.21814 0.98537 0.98081 1.01447 1.18877 0.84354 0.97735 0.98464 1.21252 0.91936 1.04295 1.40294 0.91610 1.25033 0.97581 0.96369 0.95004 1.69957 1.06121 1.32627 1.43967 0.86665 0.78456 0.83152 0.79918 1.19904 1.21300 1.19668 1.21027 0.93291 0.97965 0.94621 1.19847 0.93941 0.94841 1.02409 1.20801 0.99808 0.94329 1.02122 0.91177 0.91518 0.91418 0.85930 0.84744 0.93680 0.92850 0.92623 0.95488 0.95994 0.92687 0.85850 0.91385 0.91535 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.19 36.00 0.33 -0.69 16 2 C -0.07 -0.82 5.88 -104.63 -0.62 -1.44 16 3 C -0.14 -1.65 9.70 -39.58 -0.38 -2.03 16 4 C -0.05 -0.64 9.75 -39.58 -0.39 -1.03 16 5 C -0.46 -7.35 4.81 -39.58 -0.19 -7.54 16 6 S 1.34 24.97 12.42 -107.50 -1.34 23.63 16 7 O -0.86 -20.51 16.78 -35.23 -0.59 -21.10 16 8 C -0.39 -7.93 2.81 -26.73 -0.08 -8.01 16 9 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 10 C -0.14 -2.70 8.78 37.15 0.33 -2.37 16 11 C 0.04 1.12 4.45 -27.88 -0.12 1.00 16 12 C -0.54 -14.14 8.53 -34.44 -0.29 -14.44 16 13 H 0.07 1.52 7.60 -52.49 -0.40 1.12 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 16 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 C -0.05 -0.83 7.86 -39.58 -0.31 -1.14 16 21 C -0.11 -1.51 5.88 -104.62 -0.62 -2.13 16 22 C -0.11 -1.25 9.19 36.01 0.33 -0.92 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.07 0.54 6.70 -51.93 -0.35 0.19 16 26 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 27 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.04 0.77 6.36 -51.93 -0.33 0.44 16 29 H 0.05 1.10 8.10 -51.93 -0.42 0.68 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.12 2.23 7.46 -52.49 -0.39 1.84 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 37 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -33.68 318.01 -9.12 -42.80 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.59 Total: -0.89 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: -2.10 Total: -39.11 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.74 Total: -25.51 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.59 Total: -21.10 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 24.97 SS G_CDS: -1.34 Total: 23.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.68 -9.12 -42.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.866 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds