Wall clock time and date at job start Mon Mar 30 2020 06:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38253 * 119.99938 * 2 1 4 4 C 1.38217 * 119.99650 * 179.97438 * 3 2 1 5 5 C 1.38263 * 120.00274 * 0.02562 * 4 3 2 6 6 S 1.76200 * 120.00240 * 180.02562 * 5 4 3 7 7 O 1.42098 * 103.00047 * 203.85426 * 6 5 4 8 8 C 1.81392 * 102.99801 * 90.00084 * 6 5 4 9 9 H 1.08996 * 109.47469 * 294.99816 * 8 6 5 10 10 C 1.52994 * 109.47215 * 55.00318 * 8 6 5 11 11 C 1.53001 * 109.46995 * 175.00074 * 8 6 5 12 12 C 1.50703 * 109.47195 * 64.99911 * 11 8 6 13 13 H 1.07997 * 119.99982 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99872 * 179.97438 * 12 11 8 15 15 N 1.31510 * 120.00174 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99660 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46957 * 60.00202 * 16 14 12 18 18 H 1.48496 * 109.46776 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47067 * 299.99783 * 16 14 12 20 20 C 1.38212 * 119.99580 * 359.74597 * 5 4 3 21 21 C 1.38214 * 119.99714 * 179.97438 * 2 1 3 22 22 C 1.50703 * 120.00023 * 359.97438 * 21 2 1 23 23 H 1.09000 * 109.47362 * 270.02244 * 1 2 3 24 24 H 1.09003 * 109.47180 * 30.01946 * 1 2 3 25 25 H 1.09000 * 109.47415 * 150.01619 * 1 2 3 26 26 H 1.07994 * 120.00426 * 0.02562 * 3 2 1 27 27 H 1.08001 * 119.99823 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46981 * 299.99632 * 10 8 6 29 29 H 1.09003 * 109.47661 * 59.99540 * 10 8 6 30 30 H 1.08999 * 109.47109 * 179.97438 * 10 8 6 31 31 H 1.08999 * 109.47074 * 184.99986 * 11 8 6 32 32 H 1.08997 * 109.47180 * 305.00144 * 11 8 6 33 33 H 0.97002 * 120.00061 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.00026 * 180.26820 * 20 5 4 35 35 H 1.09002 * 109.47152 * 90.00127 * 22 21 2 36 36 H 1.09001 * 109.46980 * 330.00228 * 22 21 2 37 37 H 1.09004 * 109.47113 * 210.00208 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 16 6.0337 -0.0002 0.0019 7 8 6.3538 -1.2663 -0.5584 8 6 6.4403 -0.0011 1.7697 9 1 6.0986 0.9301 2.2216 10 6 5.7484 -1.1830 2.4516 11 6 7.9551 -0.1269 1.9445 12 6 8.6293 1.0974 1.3809 13 1 8.0366 1.8865 0.9423 14 6 10.0027 1.2105 1.4261 15 7 10.7243 0.2503 1.9616 16 14 10.8382 2.7285 0.7281 17 1 10.3550 3.9344 1.4475 18 1 12.3084 2.6062 0.8977 19 1 10.5156 2.8511 -0.7162 20 6 3.5806 -1.1970 0.0053 21 6 2.1980 -1.1970 0.0005 22 6 1.4444 -2.5021 0.0017 23 1 -0.3634 0.0004 1.0276 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5136 26 1 1.6583 2.1326 0.0004 27 1 4.1204 2.1325 0.0010 28 1 4.6692 -1.0933 2.3271 29 1 6.0901 -2.1142 1.9997 30 1 5.9931 -1.1837 3.5137 31 1 8.1923 -0.2168 3.0045 32 1 8.3095 -1.0122 1.4166 33 1 11.6905 0.3297 1.9930 34 1 4.1205 -2.1324 0.0097 35 1 1.2624 -2.8174 -1.0257 36 1 0.4922 -2.3713 0.5158 37 1 2.0337 -3.2614 0.5159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:21 Heat of formation + Delta-G solvation = -61.144644 kcal Electronic energy + Delta-G solvation = -17895.725699 eV Core-core repulsion = 15148.716276 eV Total energy + Delta-G solvation = -2747.009423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.39389 -36.78858 -36.31437 -34.41226 -33.95129 -33.03253 -29.53273 -28.45499 -27.33508 -25.28388 -23.16756 -22.50813 -21.81647 -18.56253 -18.48076 -17.54032 -16.70693 -16.59439 -16.44759 -15.79722 -15.21891 -14.85729 -14.84461 -14.17930 -13.98141 -13.81720 -13.73384 -13.65993 -13.46230 -13.30858 -13.00611 -12.91023 -12.73120 -12.55290 -12.42621 -12.33321 -12.02809 -11.88263 -11.49411 -11.17377 -10.82716 -10.50983 -9.83081 -9.60446 -9.04519 -8.14740 -6.29084 0.01260 0.44918 1.09665 1.51746 1.56499 1.62568 2.02932 2.49153 2.71418 3.08047 3.21189 3.84271 3.95654 4.06381 4.10171 4.16869 4.34872 4.40651 4.41190 4.60345 4.68507 4.80048 4.81229 4.83878 4.89460 4.98165 5.00969 5.04284 5.21320 5.28529 5.42610 5.44002 5.45610 5.52391 5.65823 5.81416 6.10321 6.17003 6.88476 7.43098 8.98117 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034749 B = 0.004881 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.583488 B = 5734.931347 C = 6087.587469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.046 4.046 5 C -0.472 4.472 6 S 1.370 4.630 7 O -0.922 6.922 8 C -0.395 4.395 9 H 0.140 0.860 10 C -0.135 4.135 11 C 0.049 3.951 12 C -0.547 4.547 13 H 0.100 0.900 14 C -0.004 4.004 15 N -0.942 5.942 16 Si 0.965 3.035 17 H -0.252 1.252 18 H -0.296 1.296 19 H -0.254 1.254 20 C -0.079 4.079 21 C -0.121 4.121 22 C -0.114 4.114 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.162 0.838 27 H 0.170 0.830 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.059 0.941 31 H -0.003 1.003 32 H -0.028 1.028 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.826 6.060 -4.120 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.153 4.153 4 C -0.065 4.065 5 C -0.570 4.570 6 S 1.570 4.430 7 O -0.918 6.918 8 C -0.512 4.512 9 H 0.158 0.842 10 C -0.192 4.192 11 C 0.011 3.989 12 C -0.584 4.584 13 H 0.118 0.882 14 C -0.202 4.202 15 N -0.581 5.581 16 Si 0.788 3.212 17 H -0.176 1.176 18 H -0.222 1.222 19 H -0.178 1.178 20 C -0.098 4.098 21 C -0.123 4.123 22 C -0.171 4.171 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.094 0.906 26 H 0.180 0.820 27 H 0.188 0.812 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.015 0.985 32 H -0.010 1.010 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.043 5.969 -4.864 22.407 hybrid contribution 0.484 -2.069 1.138 2.410 sum -20.559 3.900 -3.726 21.255 Atomic orbital electron populations 1.20950 0.88625 1.04213 1.03505 1.20364 0.97820 0.92240 0.95819 1.21578 0.94113 0.98702 1.00930 1.21307 0.94822 0.96812 0.93578 1.27851 1.19204 0.98035 1.11865 1.68953 0.80423 1.06850 0.86731 1.92890 1.80645 1.47267 1.71031 1.27439 1.01986 1.03891 1.17913 0.84227 1.21742 0.99722 0.96513 1.01272 1.18675 0.88337 0.96051 0.95802 1.21834 0.92477 1.04764 1.39359 0.88180 1.26158 0.98717 0.99897 0.95389 1.70153 1.06293 1.35478 1.46223 0.85485 0.76478 0.79136 0.80056 1.17646 1.22177 1.17803 1.20938 0.94836 0.96916 0.97134 1.20137 0.92911 0.96984 1.02236 1.20856 1.00404 0.92906 1.02891 0.89789 0.89467 0.90630 0.82005 0.81231 0.91417 0.95729 0.92213 0.98511 1.00973 0.92937 0.89216 0.90565 0.89048 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.19 71.24 0.65 -0.80 16 2 C -0.06 -1.28 5.88 -19.87 -0.12 -1.39 16 3 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 4 C -0.05 -1.04 9.75 22.27 0.22 -0.83 16 5 C -0.47 -14.75 4.81 22.27 0.11 -14.64 16 6 S 1.37 52.06 12.42 -56.49 -0.70 51.36 16 7 O -0.92 -46.95 16.78 -148.98 -2.50 -49.45 16 8 C -0.40 -16.25 2.81 30.59 0.09 -16.17 16 9 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 10 C -0.13 -5.37 8.78 71.98 0.63 -4.74 16 11 C 0.05 2.66 4.45 29.85 0.13 2.79 16 12 C -0.55 -28.91 8.53 25.60 0.22 -28.69 16 13 H 0.10 4.45 7.60 -2.91 -0.02 4.43 16 14 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 15 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.97 41.53 29.54 68.60 2.03 43.56 16 17 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.30 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 20 C -0.08 -2.64 7.86 22.27 0.17 -2.46 16 21 C -0.12 -3.17 5.88 -19.86 -0.12 -3.29 16 22 C -0.11 -2.34 9.19 71.24 0.66 -1.69 16 23 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 0.78 8.09 -2.39 -0.02 0.76 16 25 H 0.07 0.86 6.70 -2.39 -0.02 0.84 16 26 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 27 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 28 H 0.07 2.36 6.36 -2.39 -0.02 2.35 16 29 H 0.02 1.08 8.10 -2.39 -0.02 1.06 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H -0.03 -1.77 8.14 -2.39 -0.02 -1.79 16 33 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.09 3.52 7.46 -2.91 -0.02 3.50 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.39 6.70 -2.39 -0.02 1.37 16 37 H 0.05 1.21 8.08 -2.38 -0.02 1.19 16 Total: -1.00 -79.02 318.01 3.47 -75.55 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.04 Total: 10.67 kcal Atomic # 6 Polarization: -77.31 SS G_CDS: 3.32 Total: -73.99 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.28 Total: -57.70 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -2.50 Total: -49.45 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.70 Total: 51.36 kcal Total: -79.02 3.47 -75.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.406 kcal (2) G-P(sol) polarization free energy of solvation -79.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds