Wall clock time and date at job start Mon Mar 30 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00277 * 2 1 4 4 C 1.38215 * 119.99832 * 179.72656 * 3 2 1 5 5 C 1.38256 * 120.00131 * 0.50915 * 4 3 2 6 6 S 1.76202 * 119.99755 * 179.76689 * 5 4 3 7 7 O 1.42096 * 103.00520 * 23.57988 * 6 5 4 8 8 C 1.81399 * 103.00130 * 269.72129 * 6 5 4 9 9 H 1.09000 * 109.46960 * 65.00263 * 8 6 5 10 10 C 1.53006 * 109.47007 * 305.00521 * 8 6 5 11 11 C 1.52997 * 109.47412 * 185.00363 * 8 6 5 12 12 C 1.50695 * 109.47112 * 295.00328 * 11 8 6 13 13 H 1.08006 * 119.99891 * 359.97438 * 12 11 8 14 14 C 1.37881 * 120.00385 * 179.97438 * 12 11 8 15 15 N 1.31509 * 119.99617 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46794 * 90.00492 * 16 14 12 18 18 H 1.48501 * 109.47178 * 210.00047 * 16 14 12 19 19 H 1.48498 * 109.47488 * 330.00292 * 16 14 12 20 20 C 1.38205 * 120.00034 * 359.49035 * 5 4 3 21 21 C 1.38220 * 119.99877 * 179.97438 * 2 1 3 22 22 C 1.50705 * 119.99891 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.46775 * 270.02500 * 1 2 3 24 24 H 1.08997 * 109.46993 * 30.01847 * 1 2 3 25 25 H 1.08997 * 109.47464 * 150.01820 * 1 2 3 26 26 H 1.07999 * 119.99861 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99820 * 180.27281 * 4 3 2 28 28 H 1.09000 * 109.47050 * 299.99686 * 10 8 6 29 29 H 1.09001 * 109.46801 * 59.99798 * 10 8 6 30 30 H 1.09001 * 109.46998 * 179.97438 * 10 8 6 31 31 H 1.09001 * 109.47096 * 55.00128 * 11 8 6 32 32 H 1.08994 * 109.47065 * 175.00287 * 11 8 6 33 33 H 0.97000 * 120.00438 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.00456 * 180.28057 * 20 5 4 35 35 H 1.08994 * 109.46791 * 270.02662 * 22 21 2 36 36 H 1.08996 * 109.46810 * 30.02215 * 22 21 2 37 37 H 1.08999 * 109.47240 * 150.02418 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2717 -0.0002 0.0008 6 16 6.0337 -0.0002 0.0019 7 8 6.3531 1.2662 0.5616 8 6 6.4429 -0.0009 -1.7654 9 1 6.1017 0.9303 -2.2176 10 6 5.7517 -1.1828 -2.4484 11 6 7.9579 -0.1267 -1.9381 12 6 8.6312 1.0974 -1.3734 13 1 8.0379 1.8866 -0.9355 14 6 10.0048 1.2102 -1.4158 15 7 10.7272 0.2496 -1.9494 16 14 10.8393 2.7280 -0.7165 17 1 11.1504 2.5049 0.7184 18 1 12.0975 2.9884 -1.4610 19 1 9.9337 3.8971 -0.8507 20 6 3.5806 -1.1971 0.0008 21 6 2.1981 -1.1970 0.0005 22 6 1.4445 -2.5022 0.0017 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 0.0102 28 1 6.0929 -2.1140 -1.9961 29 1 4.6724 -1.0930 -2.3253 30 1 5.9972 -1.1829 -3.5104 31 1 8.3115 -1.0122 -1.4098 32 1 8.1965 -0.2164 -2.9978 33 1 11.6934 0.3289 -1.9796 34 1 4.1205 -2.1324 0.0015 35 1 1.2628 -2.8158 1.0296 36 1 0.4921 -2.3722 -0.5122 37 1 2.0335 -3.2623 -0.5115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695890119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:26 Heat of formation + Delta-G solvation = -36.437922 kcal Electronic energy + Delta-G solvation = -17904.851579 eV Core-core repulsion = 15158.913519 eV Total energy + Delta-G solvation = -2745.938059 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.38751 -34.92727 -34.48706 -33.34984 -32.19222 -31.87496 -27.85670 -27.22471 -26.37179 -23.27011 -22.15167 -21.07599 -20.46271 -17.20545 -16.34853 -15.91387 -15.75539 -15.04920 -14.65607 -14.43146 -14.33599 -13.60248 -13.37381 -13.08167 -12.92270 -12.77834 -12.36234 -12.14197 -12.03779 -11.72740 -11.63510 -11.48830 -11.25397 -11.05379 -10.83508 -10.64585 -10.50791 -10.40422 -9.68414 -9.17576 -8.89070 -8.74290 -8.56288 -8.35506 -7.51024 -5.99777 -4.01961 1.14630 1.48551 2.52814 3.38028 3.43312 3.43727 3.52011 3.85243 4.52367 4.64125 4.75531 4.84759 4.98407 5.08908 5.34300 5.36915 5.37951 5.50995 5.54624 5.70087 5.70723 5.76773 5.79065 5.86855 6.02195 6.10828 6.18067 6.43667 6.49881 6.54047 6.62718 6.63907 6.84059 7.09421 7.58741 7.61750 8.01910 8.36728 9.09495 9.65406 11.10985 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.004927 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.112406 B = 5682.088472 C = 6119.919499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.058 4.058 5 C -0.455 4.455 6 S 1.325 4.675 7 O -0.842 6.842 8 C -0.396 4.396 9 H 0.078 0.922 10 C -0.124 4.124 11 C 0.047 3.953 12 C -0.537 4.537 13 H 0.070 0.930 14 C 0.063 3.937 15 N -0.895 5.895 16 Si 0.891 3.109 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.043 4.043 21 C -0.110 4.110 22 C -0.114 4.114 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.664 -7.878 3.511 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.549 4.549 6 S 1.522 4.478 7 O -0.837 6.837 8 C -0.514 4.514 9 H 0.097 0.903 10 C -0.183 4.183 11 C 0.008 3.992 12 C -0.575 4.575 13 H 0.088 0.912 14 C -0.138 4.138 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.062 4.062 21 C -0.111 4.111 22 C -0.171 4.171 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.909 -7.894 4.264 20.030 hybrid contribution -0.374 2.830 -0.856 2.981 sum -18.283 -5.063 3.408 19.275 Atomic orbital electron populations 1.20886 0.91562 1.02764 1.02267 1.19829 0.95670 0.92908 0.98308 1.21072 0.94444 0.97305 1.02715 1.21148 0.94082 0.98047 0.94374 1.28473 1.21876 0.96443 1.08099 1.69382 0.79067 1.10114 0.89255 1.93063 1.76870 1.44341 1.69441 1.27452 1.05878 1.02084 1.15998 0.90332 1.21532 0.98592 0.97120 1.01031 1.18856 0.84204 0.97585 0.98507 1.21582 0.92134 1.04968 1.38826 0.91208 1.24944 0.97501 0.96318 0.95067 1.69956 1.05842 1.32703 1.44971 0.86596 0.78616 0.83679 0.79233 1.20401 1.21323 1.19896 1.20711 0.92973 0.96878 0.95619 1.19830 0.94087 0.94698 1.02523 1.20829 0.99945 0.94096 1.02202 0.91143 0.91756 0.91077 0.86441 0.85763 0.91879 0.93454 0.92544 0.95434 0.95298 0.92965 0.84925 0.91324 0.91513 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 36.01 0.35 -0.69 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.14 -1.92 9.70 -39.59 -0.38 -2.30 16 4 C -0.06 -0.97 9.44 -39.58 -0.37 -1.35 16 5 C -0.46 -7.27 4.81 -39.59 -0.19 -7.46 16 6 S 1.33 24.43 12.71 -107.50 -1.37 23.06 16 7 O -0.84 -20.67 15.24 -35.23 -0.54 -21.20 16 8 C -0.40 -7.98 2.81 -26.73 -0.08 -8.05 16 9 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 10 C -0.12 -1.93 8.84 37.16 0.33 -1.60 16 11 C 0.05 1.17 4.45 -27.89 -0.12 1.05 16 12 C -0.54 -15.61 8.39 -34.44 -0.29 -15.90 16 13 H 0.07 2.13 6.35 -52.48 -0.33 1.80 16 14 C 0.06 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.89 23.02 29.54 -169.99 -5.02 18.00 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 20 C -0.04 -0.55 8.19 -39.59 -0.32 -0.87 16 21 C -0.11 -1.30 5.88 -104.62 -0.62 -1.91 16 22 C -0.11 -0.94 9.60 36.01 0.35 -0.59 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 25 H 0.07 0.53 5.95 -51.93 -0.31 0.22 16 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.12 2.32 7.45 -52.48 -0.39 1.93 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.65 6.37 -51.93 -0.33 0.32 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.48 5.95 -51.93 -0.31 0.17 16 37 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 314.82 15.07 4.74 4.74 Total: -1.00 -35.62 314.82 -8.96 -44.58 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.45 Total: -3.78 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: -2.07 Total: -39.37 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.54 Total: -21.20 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Atomic # 16 Polarization: 24.43 SS G_CDS: -1.37 Total: 23.06 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.62 -8.96 -44.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.145 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds