Wall clock time and date at job start Mon Mar 30 2020 06:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00277 * 2 1 4 4 C 1.38215 * 119.99832 * 179.72656 * 3 2 1 5 5 C 1.38256 * 120.00131 * 0.50915 * 4 3 2 6 6 S 1.76202 * 119.99755 * 179.76689 * 5 4 3 7 7 O 1.42096 * 103.00520 * 23.57988 * 6 5 4 8 8 C 1.81399 * 103.00130 * 269.72129 * 6 5 4 9 9 H 1.09000 * 109.46960 * 65.00263 * 8 6 5 10 10 C 1.53006 * 109.47007 * 305.00521 * 8 6 5 11 11 C 1.52997 * 109.47412 * 185.00363 * 8 6 5 12 12 C 1.50695 * 109.47112 * 295.00328 * 11 8 6 13 13 H 1.08006 * 119.99891 * 359.97438 * 12 11 8 14 14 C 1.37881 * 120.00385 * 179.97438 * 12 11 8 15 15 N 1.31509 * 119.99617 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00134 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46794 * 90.00492 * 16 14 12 18 18 H 1.48501 * 109.47178 * 210.00047 * 16 14 12 19 19 H 1.48498 * 109.47488 * 330.00292 * 16 14 12 20 20 C 1.38205 * 120.00034 * 359.49035 * 5 4 3 21 21 C 1.38220 * 119.99877 * 179.97438 * 2 1 3 22 22 C 1.50705 * 119.99891 * 359.97438 * 21 2 1 23 23 H 1.08997 * 109.46775 * 270.02500 * 1 2 3 24 24 H 1.08997 * 109.46993 * 30.01847 * 1 2 3 25 25 H 1.08997 * 109.47464 * 150.01820 * 1 2 3 26 26 H 1.07999 * 119.99861 * 0.02562 * 3 2 1 27 27 H 1.08006 * 119.99820 * 180.27281 * 4 3 2 28 28 H 1.09000 * 109.47050 * 299.99686 * 10 8 6 29 29 H 1.09001 * 109.46801 * 59.99798 * 10 8 6 30 30 H 1.09001 * 109.46998 * 179.97438 * 10 8 6 31 31 H 1.09001 * 109.47096 * 55.00128 * 11 8 6 32 32 H 1.08994 * 109.47065 * 175.00287 * 11 8 6 33 33 H 0.97000 * 120.00438 * 179.97438 * 15 14 12 34 34 H 1.07997 * 120.00456 * 180.28057 * 20 5 4 35 35 H 1.08994 * 109.46791 * 270.02662 * 22 21 2 36 36 H 1.08996 * 109.46810 * 30.02215 * 22 21 2 37 37 H 1.08999 * 109.47240 * 150.02418 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1971 0.0057 5 6 4.2717 -0.0002 0.0008 6 16 6.0337 -0.0002 0.0019 7 8 6.3531 1.2662 0.5616 8 6 6.4429 -0.0009 -1.7654 9 1 6.1017 0.9303 -2.2176 10 6 5.7517 -1.1828 -2.4484 11 6 7.9579 -0.1267 -1.9381 12 6 8.6312 1.0974 -1.3734 13 1 8.0379 1.8866 -0.9355 14 6 10.0048 1.2102 -1.4158 15 7 10.7272 0.2496 -1.9494 16 14 10.8393 2.7280 -0.7165 17 1 11.1504 2.5049 0.7184 18 1 12.0975 2.9884 -1.4610 19 1 9.9337 3.8971 -0.8507 20 6 3.5806 -1.1971 0.0008 21 6 2.1981 -1.1970 0.0005 22 6 1.4445 -2.5022 0.0017 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5141 25 1 -0.3634 -0.8901 -0.5135 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1325 0.0102 28 1 6.0929 -2.1140 -1.9961 29 1 4.6724 -1.0930 -2.3253 30 1 5.9972 -1.1829 -3.5104 31 1 8.3115 -1.0122 -1.4098 32 1 8.1965 -0.2164 -2.9978 33 1 11.6934 0.3289 -1.9796 34 1 4.1205 -2.1324 0.0015 35 1 1.2628 -2.8158 1.0296 36 1 0.4921 -2.3722 -0.5122 37 1 2.0335 -3.2623 -0.5115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:26 Heat of formation + Delta-G solvation = -59.289119 kcal Electronic energy + Delta-G solvation = -17905.842481 eV Core-core repulsion = 15158.913519 eV Total energy + Delta-G solvation = -2746.928961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.40761 -36.66855 -36.35788 -34.42067 -33.92765 -33.04580 -29.40719 -28.41113 -27.27679 -25.21030 -23.18811 -22.47836 -21.84149 -18.57813 -18.54568 -17.33575 -16.80303 -16.63828 -16.35109 -15.83270 -15.32098 -14.93729 -14.77006 -14.24625 -14.01047 -13.91053 -13.56004 -13.51847 -13.41744 -13.22752 -12.88938 -12.74499 -12.67290 -12.56248 -12.46475 -12.26459 -12.13299 -11.85522 -11.55636 -11.16216 -10.73791 -10.51237 -9.86541 -9.60343 -9.09478 -8.26071 -6.33816 -0.00665 0.41864 1.10368 1.29511 1.31115 1.42947 2.04423 2.36155 2.69941 3.05281 3.17200 3.85476 3.93737 4.05150 4.15787 4.33189 4.39165 4.42790 4.59534 4.66997 4.75971 4.79600 4.92790 5.01739 5.05675 5.08752 5.13315 5.23160 5.33687 5.35597 5.40783 5.44839 5.47710 5.59102 5.67646 5.78087 6.08695 6.18838 6.82168 7.35850 8.84540 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.004927 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.112406 B = 5682.088472 C = 6119.919499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.092 4.092 5 C -0.468 4.468 6 S 1.368 4.632 7 O -0.914 6.914 8 C -0.396 4.396 9 H 0.045 0.955 10 C -0.119 4.119 11 C 0.050 3.950 12 C -0.556 4.556 13 H 0.044 0.956 14 C 0.018 3.982 15 N -0.917 5.917 16 Si 0.941 3.059 17 H -0.270 1.270 18 H -0.268 1.268 19 H -0.286 1.286 20 C -0.039 4.039 21 C -0.107 4.107 22 C -0.114 4.114 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.129 0.871 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.033 0.967 32 H 0.005 0.995 33 H 0.267 0.733 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 -10.447 3.814 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.064 4.064 3 C -0.165 4.165 4 C -0.112 4.112 5 C -0.565 4.565 6 S 1.569 4.431 7 O -0.910 6.910 8 C -0.514 4.514 9 H 0.063 0.937 10 C -0.177 4.177 11 C 0.012 3.988 12 C -0.594 4.594 13 H 0.063 0.937 14 C -0.181 4.181 15 N -0.557 5.557 16 Si 0.767 3.233 17 H -0.195 1.195 18 H -0.193 1.193 19 H -0.211 1.211 20 C -0.058 4.058 21 C -0.108 4.108 22 C -0.170 4.170 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.147 0.853 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.076 0.924 34 H 0.190 0.810 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.383 -10.462 4.556 23.360 hybrid contribution 0.204 3.593 -0.944 3.721 sum -20.179 -6.869 3.613 21.620 Atomic orbital electron populations 1.20983 0.88651 1.04170 1.03560 1.20326 0.97805 0.92216 0.96036 1.21246 0.93225 0.99174 1.02876 1.21039 0.95634 0.97092 0.97401 1.27867 1.19359 0.97809 1.11457 1.68289 0.80427 1.07649 0.86781 1.92944 1.80036 1.46969 1.71069 1.27389 1.03120 1.02837 1.18030 0.93655 1.21550 0.99435 0.96201 1.00500 1.18723 0.87391 0.96080 0.96614 1.21823 0.92652 1.05915 1.39058 0.93723 1.25619 0.98100 0.98902 0.95470 1.70005 1.06326 1.33864 1.45499 0.85817 0.78040 0.80200 0.79230 1.19527 1.19298 1.21124 1.21183 0.93945 0.96766 0.93875 1.20347 0.93816 0.96363 1.00260 1.20947 1.00351 0.92043 1.03667 0.89700 0.91226 0.88908 0.85293 0.89557 0.88465 0.91268 0.92896 0.94859 0.97623 0.92395 0.81034 0.89777 0.89971 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 9.60 71.24 0.68 -0.88 16 2 C -0.06 -1.36 5.88 -19.87 -0.12 -1.48 16 3 C -0.15 -4.04 9.70 22.27 0.22 -3.83 16 4 C -0.09 -3.26 9.44 22.27 0.21 -3.05 16 5 C -0.47 -14.86 4.81 22.27 0.11 -14.75 16 6 S 1.37 52.13 12.71 -56.49 -0.72 51.41 16 7 O -0.91 -48.09 15.24 -148.98 -2.27 -50.36 16 8 C -0.40 -16.48 2.81 30.60 0.09 -16.40 16 9 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 10 C -0.12 -3.50 8.84 71.98 0.64 -2.86 16 11 C 0.05 2.59 4.45 29.85 0.13 2.73 16 12 C -0.56 -33.79 8.39 25.60 0.21 -33.57 16 13 H 0.04 2.90 6.35 -2.91 -0.02 2.88 16 14 C 0.02 1.11 5.46 84.66 0.46 1.57 16 15 N -0.92 -55.51 13.29 21.45 0.28 -55.23 16 16 Si 0.94 48.25 29.54 68.60 2.03 50.27 16 17 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 20 C -0.04 -0.87 8.19 22.27 0.18 -0.69 16 21 C -0.11 -2.07 5.88 -19.86 -0.12 -2.19 16 22 C -0.11 -1.22 9.60 71.24 0.68 -0.53 16 23 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 25 H 0.09 0.87 5.95 -2.39 -0.01 0.86 16 26 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 27 H 0.09 3.60 7.45 -2.91 -0.02 3.58 16 28 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 1.74 6.37 -2.39 -0.02 1.72 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.08 0.67 5.95 -2.39 -0.01 0.66 16 37 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 Total: -1.00 -82.25 314.82 3.75 -78.50 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 1.04 Total: 1.34 kcal Atomic # 6 Polarization: -79.32 SS G_CDS: 3.38 Total: -75.94 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.28 Total: -55.23 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -2.27 Total: -50.36 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.72 Total: 51.41 kcal Total: -82.25 3.75 -78.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.212 kcal (2) G-P(sol) polarization free energy of solvation -82.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds