Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47190 * 90.00472 * 8 7 2 10 10 O 1.42105 * 109.46317 * 296.38240 * 9 8 7 11 11 C 1.81396 * 102.99949 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47370 * 64.99771 * 11 9 8 13 13 C 1.52990 * 109.47319 * 304.99747 * 11 9 8 14 14 C 1.53004 * 109.47077 * 184.99601 * 11 9 8 15 15 C 1.50701 * 109.46839 * 295.00203 * 14 11 9 16 16 H 1.07994 * 120.00319 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99406 * 180.02562 * 15 14 11 18 18 N 1.31503 * 120.00078 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46925 * 59.99606 * 19 17 15 21 21 H 1.48500 * 109.47044 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47062 * 300.00028 * 19 17 15 23 23 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 25 25 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 26 26 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 27 27 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47001 * 209.99872 * 8 7 2 31 31 H 1.08998 * 109.47342 * 329.99886 * 8 7 2 32 32 H 1.09002 * 109.47235 * 299.99867 * 13 11 9 33 33 H 1.09000 * 109.47317 * 59.99926 * 13 11 9 34 34 H 1.08999 * 109.47515 * 180.02562 * 13 11 9 35 35 H 1.08997 * 109.46788 * 55.00091 * 14 11 9 36 36 H 1.08995 * 109.47148 * 175.00099 * 14 11 9 37 37 H 0.97011 * 119.99804 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 16 1.1418 -3.0343 -1.6950 10 8 0.3038 -2.0879 -2.3444 11 6 0.2413 -4.5945 -1.4824 12 1 -0.7212 -4.3972 -1.0104 13 6 1.0586 -5.5387 -0.5986 14 6 0.0154 -5.2434 -2.8495 15 6 -0.8915 -4.3691 -3.6767 16 1 -1.2693 -3.4436 -3.2681 17 6 -1.2397 -4.7515 -4.9549 18 7 -0.7801 -5.8788 -5.4522 19 14 -2.3645 -3.6682 -5.9800 20 1 -1.7360 -2.3352 -6.1629 21 1 -2.5846 -4.2985 -7.3065 22 1 -3.6674 -3.5100 -5.2853 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8901 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 1.6583 2.1327 0.0004 27 1 4.1203 2.1327 0.0010 28 1 5.3518 0.0002 0.0005 29 1 4.1208 -2.1321 0.0001 30 1 2.0340 -3.2590 0.5299 31 1 0.4925 -2.3691 0.5261 32 1 2.0211 -5.7361 -1.0706 33 1 1.2196 -5.0765 0.3754 34 1 0.5178 -6.4764 -0.4712 35 1 0.9719 -5.3595 -3.3590 36 1 -0.4461 -6.2217 -2.7155 37 1 -1.0254 -6.1480 -6.3513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = -31.718004 kcal Electronic energy + Delta-G solvation = -18000.833914 eV Core-core repulsion = 15255.100526 eV Total energy + Delta-G solvation = -2745.733388 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36456 -34.86611 -34.52217 -33.25431 -32.10669 -31.88402 -27.86159 -27.12746 -26.17756 -23.28145 -22.01319 -21.04531 -20.31461 -16.65755 -16.39045 -16.24969 -15.66017 -15.25356 -14.95621 -14.45627 -14.21910 -13.63391 -13.15614 -13.03531 -13.00583 -12.68486 -12.32781 -12.03581 -11.92417 -11.87191 -11.59776 -11.41051 -11.03122 -10.87238 -10.77376 -10.67466 -10.57131 -10.42796 -9.76019 -9.30852 -8.99935 -8.64958 -8.41158 -8.17755 -7.37477 -5.98473 -3.99854 1.32957 1.47259 2.32530 3.39536 3.41312 3.42368 3.50964 3.89573 4.52517 4.53714 4.83214 4.90780 5.04928 5.10808 5.29061 5.39575 5.41834 5.61463 5.69709 5.72228 5.77943 5.79673 5.90648 5.93691 6.04931 6.18368 6.38386 6.40989 6.54222 6.56667 6.58983 6.77573 6.80088 7.10405 7.57472 7.59493 8.03198 8.36815 9.10520 9.66839 11.12477 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.005626 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.582954 B = 4976.036654 C = 5575.643623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 C -0.120 4.120 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.437 4.437 9 S 1.254 4.746 10 O -0.816 6.816 11 C -0.398 4.398 12 H 0.076 0.924 13 C -0.126 4.126 14 C 0.047 3.953 15 C -0.532 4.532 16 H 0.070 0.930 17 C 0.062 3.938 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.288 1.288 22 H -0.279 1.279 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.028 0.972 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 7.747 12.786 18.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.135 4.135 7 C -0.054 4.054 8 C -0.569 4.569 9 S 1.451 4.549 10 O -0.812 6.812 11 C -0.516 4.516 12 H 0.095 0.905 13 C -0.184 4.184 14 C 0.009 3.991 15 C -0.570 4.570 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.537 5.537 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.136 0.864 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.045 8.097 11.810 18.084 hybrid contribution -2.692 0.758 0.521 2.845 sum 8.353 8.855 12.331 17.327 Atomic orbital electron populations 1.20949 0.91417 1.01791 1.03817 1.19810 0.96184 0.92744 0.98924 1.20970 0.94321 0.97228 1.01293 1.21066 0.94172 0.98012 1.01248 1.21067 0.99659 0.92466 1.01211 1.21047 0.93142 0.98502 1.00811 1.19068 0.93419 0.92803 1.00143 1.27194 1.04782 1.00555 1.24323 1.70725 1.13894 0.87025 0.83259 1.93110 1.70435 1.56625 1.60990 1.27424 1.06857 1.12498 1.04868 0.90501 1.21550 1.00066 0.99283 0.97500 1.18840 0.97554 0.96145 0.86535 1.21519 1.29613 1.06855 0.99030 0.91177 1.24937 0.96191 0.94989 0.97782 1.69948 1.45173 1.21976 1.16589 0.86666 0.81270 0.81125 0.79094 1.19909 1.21357 1.20430 0.89357 0.91920 0.92129 0.86387 0.86398 0.86098 0.85354 0.86327 0.89046 0.91685 0.93554 0.92387 0.95558 0.95383 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.37 36.01 0.34 -1.52 16 2 C -0.08 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 5 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 6 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 7 C -0.05 -0.75 5.14 -104.62 -0.54 -1.29 16 8 C -0.44 -6.06 5.04 36.00 0.18 -5.88 16 9 S 1.25 22.14 12.43 -107.50 -1.34 20.81 16 10 O -0.82 -19.30 15.20 -35.23 -0.54 -19.83 16 11 C -0.40 -7.68 2.84 -26.73 -0.08 -7.75 16 12 H 0.08 1.59 8.14 -51.92 -0.42 1.16 16 13 C -0.13 -1.81 8.94 37.15 0.33 -1.48 16 14 C 0.05 1.18 4.45 -27.88 -0.12 1.06 16 15 C -0.53 -15.42 8.24 -34.44 -0.28 -15.71 16 16 H 0.07 2.12 6.23 -52.49 -0.33 1.79 16 17 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.90 -27.00 13.28 55.43 0.74 -26.26 16 19 Si 0.89 23.13 29.54 -169.99 -5.02 18.10 16 20 H -0.27 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 23 H 0.09 1.56 7.49 -51.93 -0.39 1.17 16 24 H 0.06 0.93 5.94 -51.93 -0.31 0.63 16 25 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 26 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.27 6.84 -51.92 -0.36 0.91 16 31 H 0.09 1.33 5.94 -51.93 -0.31 1.02 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.53 6.51 -51.93 -0.34 0.19 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 314.93 15.07 4.75 4.75 Total: -1.00 -34.99 314.93 -9.24 -44.23 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.39 Total: -1.85 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: -2.45 Total: -39.94 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.54 Total: -19.83 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Atomic # 16 Polarization: 22.14 SS G_CDS: -1.34 Total: 20.81 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.99 -9.24 -44.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.510 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds