Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38214 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.38212 * 120.00042 * 359.97438 * 5 4 3 7 7 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 8 8 C 1.50698 * 119.99834 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.47190 * 90.00472 * 8 7 2 10 10 O 1.42105 * 109.46317 * 296.38240 * 9 8 7 11 11 C 1.81396 * 102.99949 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.47370 * 64.99771 * 11 9 8 13 13 C 1.52990 * 109.47319 * 304.99747 * 11 9 8 14 14 C 1.53004 * 109.47077 * 184.99601 * 11 9 8 15 15 C 1.50701 * 109.46839 * 295.00203 * 14 11 9 16 16 H 1.07994 * 120.00319 * 359.97438 * 15 14 11 17 17 C 1.37885 * 119.99406 * 180.02562 * 15 14 11 18 18 N 1.31503 * 120.00078 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99635 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46925 * 59.99606 * 19 17 15 21 21 H 1.48500 * 109.47044 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47062 * 300.00028 * 19 17 15 23 23 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 25 25 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 26 26 H 1.07999 * 120.00073 * 0.02562 * 3 2 1 27 27 H 1.07991 * 120.00008 * 180.02562 * 4 3 2 28 28 H 1.08002 * 119.99635 * 179.97438 * 5 4 3 29 29 H 1.08000 * 119.99941 * 179.97438 * 6 5 4 30 30 H 1.09000 * 109.47001 * 209.99872 * 8 7 2 31 31 H 1.08998 * 109.47342 * 329.99886 * 8 7 2 32 32 H 1.09002 * 109.47235 * 299.99867 * 13 11 9 33 33 H 1.09000 * 109.47317 * 59.99926 * 13 11 9 34 34 H 1.08999 * 109.47515 * 180.02562 * 13 11 9 35 35 H 1.08997 * 109.46788 * 55.00091 * 14 11 9 36 36 H 1.08995 * 109.47148 * 175.00099 * 14 11 9 37 37 H 0.97011 * 119.99804 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 2.1981 -1.1969 0.0057 8 6 1.4447 -2.5020 0.0125 9 16 1.1418 -3.0343 -1.6950 10 8 0.3038 -2.0879 -2.3444 11 6 0.2413 -4.5945 -1.4824 12 1 -0.7212 -4.3972 -1.0104 13 6 1.0586 -5.5387 -0.5986 14 6 0.0154 -5.2434 -2.8495 15 6 -0.8915 -4.3691 -3.6767 16 1 -1.2693 -3.4436 -3.2681 17 6 -1.2397 -4.7515 -4.9549 18 7 -0.7801 -5.8788 -5.4522 19 14 -2.3645 -3.6682 -5.9800 20 1 -1.7360 -2.3352 -6.1629 21 1 -2.5846 -4.2985 -7.3065 22 1 -3.6674 -3.5100 -5.2853 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8901 0.5137 25 1 -0.3634 0.8900 0.5138 26 1 1.6583 2.1327 0.0004 27 1 4.1203 2.1327 0.0010 28 1 5.3518 0.0002 0.0005 29 1 4.1208 -2.1321 0.0001 30 1 2.0340 -3.2590 0.5299 31 1 0.4925 -2.3691 0.5261 32 1 2.0211 -5.7361 -1.0706 33 1 1.2196 -5.0765 0.3754 34 1 0.5178 -6.4764 -0.4712 35 1 0.9719 -5.3595 -3.3590 36 1 -0.4461 -6.2217 -2.7155 37 1 -1.0254 -6.1480 -6.3513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = -53.724595 kcal Electronic energy + Delta-G solvation = -18001.788192 eV Core-core repulsion = 15255.100526 eV Total energy + Delta-G solvation = -2746.687665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.31448 -36.51041 -36.32518 -34.30240 -33.95948 -32.99728 -29.48714 -28.37881 -27.26985 -25.17756 -22.99852 -22.49152 -21.51297 -18.56320 -18.07953 -17.26491 -16.84068 -16.63602 -16.56284 -15.92090 -15.54816 -15.06849 -14.54413 -14.38142 -13.97076 -13.93313 -13.70657 -13.62702 -13.35268 -13.25448 -13.04859 -12.93528 -12.67892 -12.48647 -12.33086 -12.24345 -11.83519 -11.76631 -11.53655 -11.14547 -10.79172 -10.55553 -9.61624 -9.44877 -8.80634 -8.24607 -6.30901 0.25798 0.53586 1.04308 1.28517 1.31318 1.41055 2.03048 2.36409 2.92666 3.06461 3.20519 3.76058 3.93502 4.09897 4.12560 4.19597 4.36614 4.41121 4.44465 4.58427 4.69374 4.78044 4.82304 4.85012 4.91965 5.11546 5.16555 5.25336 5.30415 5.40495 5.49844 5.60043 5.62233 5.67534 5.77653 5.79442 6.19403 6.20198 6.84978 7.37848 8.86094 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.005626 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.582954 B = 4976.036654 C = 5575.643623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.136 4.136 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.414 4.414 9 S 1.276 4.724 10 O -0.888 6.888 11 C -0.396 4.396 12 H 0.053 0.947 13 C -0.124 4.124 14 C 0.049 3.951 15 C -0.546 4.546 16 H 0.050 0.950 17 C 0.014 3.986 18 N -0.922 5.922 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.277 1.277 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.145 0.855 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.004 0.996 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 8.188 14.379 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.107 4.107 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.081 4.081 8 C -0.549 4.549 9 S 1.477 4.523 10 O -0.883 6.883 11 C -0.514 4.514 12 H 0.072 0.928 13 C -0.182 4.182 14 C 0.011 3.989 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.562 5.562 19 Si 0.767 3.233 20 H -0.207 1.207 21 H -0.194 1.194 22 H -0.202 1.202 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.022 0.978 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.556 8.507 13.362 20.849 hybrid contribution -3.376 0.718 0.158 3.455 sum 10.180 9.224 13.520 19.275 Atomic orbital electron populations 1.20863 0.92639 1.02497 1.01639 1.19988 0.95778 0.94198 1.00745 1.21215 0.95493 0.97062 1.01619 1.21482 0.93572 0.99740 0.99664 1.21546 1.01475 0.91835 0.99472 1.21496 0.92164 1.00564 0.99201 1.19226 0.94714 0.92173 1.02015 1.26921 1.05405 1.02179 1.20408 1.69678 1.11901 0.85272 0.85423 1.93022 1.71289 1.58567 1.65449 1.27341 1.07198 1.14471 1.02416 0.92816 1.21614 1.00156 0.97973 0.98451 1.18711 0.96218 0.94702 0.89310 1.21815 1.30200 1.06611 0.99862 0.93226 1.25637 0.97651 0.96251 0.98947 1.70011 1.46164 1.22934 1.17086 0.85878 0.79571 0.79301 0.78551 1.20662 1.19360 1.20210 0.92983 0.92462 0.90253 0.85439 0.83686 0.82685 0.81953 0.81924 0.89839 0.89102 0.89718 0.92916 0.95758 0.97803 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 9.37 71.24 0.67 -3.08 16 2 C -0.11 -3.10 5.88 -19.86 -0.12 -3.21 16 3 C -0.14 -3.36 9.70 22.27 0.22 -3.15 16 4 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 5 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 6 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 7 C -0.08 -2.11 5.14 -19.87 -0.10 -2.21 16 8 C -0.41 -10.60 5.04 71.24 0.36 -10.24 16 9 S 1.28 44.98 12.43 -56.49 -0.70 44.27 16 10 O -0.89 -43.96 15.20 -148.98 -2.26 -46.23 16 11 C -0.40 -15.36 2.84 30.59 0.09 -15.28 16 12 H 0.05 2.28 8.14 -2.39 -0.02 2.27 16 13 C -0.12 -3.26 8.94 71.98 0.64 -2.61 16 14 C 0.05 2.49 4.45 29.85 0.13 2.62 16 15 C -0.55 -32.88 8.24 25.60 0.21 -32.67 16 16 H 0.05 3.15 6.23 -2.91 -0.02 3.13 16 17 C 0.01 0.83 5.46 84.66 0.46 1.29 16 18 N -0.92 -56.36 13.28 21.45 0.28 -56.07 16 19 Si 0.94 48.48 29.54 68.60 2.03 50.50 16 20 H -0.28 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 23 H 0.05 1.98 7.49 -2.39 -0.02 1.96 16 24 H 0.06 1.77 5.94 -2.39 -0.01 1.76 16 25 H 0.08 2.04 8.09 -2.39 -0.02 2.02 16 26 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.15 2.02 8.06 -2.92 -0.02 1.99 16 28 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 30 H 0.16 2.68 6.84 -2.39 -0.02 2.66 16 31 H 0.08 2.33 5.94 -2.39 -0.01 2.32 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.58 6.51 -2.39 -0.02 1.56 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -80.25 314.93 3.61 -76.64 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.04 Total: 5.79 kcal Atomic # 6 Polarization: -78.13 SS G_CDS: 3.22 Total: -74.91 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -2.26 Total: -46.23 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.50 kcal Atomic # 16 Polarization: 44.98 SS G_CDS: -0.70 Total: 44.27 kcal Total: -80.25 3.61 -76.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.913 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds