Wall clock time and date at job start Mon Mar 30 2020 06:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38262 * 119.99631 * 2 1 4 4 C 1.38213 * 119.99923 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99783 * 359.80890 * 4 3 2 6 6 C 1.38212 * 120.00167 * 0.42003 * 5 4 3 7 7 C 1.50702 * 120.00054 * 179.80620 * 6 5 4 8 8 S 1.81399 * 109.47410 * 269.72912 * 7 6 5 9 9 O 1.42095 * 109.46891 * 63.61361 * 8 7 6 10 10 C 1.81405 * 102.99706 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47340 * 294.99656 * 10 8 7 12 12 C 1.53000 * 109.47268 * 55.00295 * 10 8 7 13 13 C 1.53007 * 109.46788 * 175.00114 * 10 8 7 14 14 C 1.50708 * 109.47101 * 64.99834 * 13 10 8 15 15 H 1.08006 * 119.99725 * 0.02562 * 14 13 10 16 16 C 1.37867 * 119.99846 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47563 * 89.99729 * 18 16 14 20 20 H 1.48507 * 109.47325 * 209.99970 * 18 16 14 21 21 H 1.48495 * 109.46864 * 329.99428 * 18 16 14 22 22 C 1.38204 * 120.00225 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46910 * 270.02096 * 1 2 3 24 24 H 1.08994 * 109.47099 * 30.02440 * 1 2 3 25 25 H 1.09003 * 109.46643 * 150.02055 * 1 2 3 26 26 H 1.07999 * 119.99907 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99788 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.00169 * 180.23564 * 5 4 3 29 29 H 1.09004 * 109.46923 * 149.72898 * 7 6 5 30 30 H 1.09004 * 109.46818 * 29.73448 * 7 6 5 31 31 H 1.08995 * 109.46888 * 59.99829 * 12 10 8 32 32 H 1.09000 * 109.46813 * 180.02562 * 12 10 8 33 33 H 1.08998 * 109.46475 * 299.99789 * 12 10 8 34 34 H 1.08997 * 109.46840 * 184.99984 * 13 10 8 35 35 H 1.09005 * 109.47096 * 305.00152 * 13 10 8 36 36 H 0.97001 * 119.99679 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.00013 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0051 6 6 3.5807 -1.1968 0.0003 7 6 4.3343 -2.5019 0.0008 8 16 4.6362 -3.0265 -1.7092 9 8 5.4736 -2.0774 -2.3550 10 6 5.5369 -4.5878 -1.5039 11 1 6.4997 -4.3924 -1.0317 12 6 4.7201 -5.5359 -0.6238 13 6 5.7620 -5.2306 -2.8741 14 6 6.6684 -4.3526 -3.6981 15 1 7.0464 -3.4288 -3.2855 16 6 7.0149 -4.7288 -4.9784 17 7 6.5550 -5.8539 -5.4804 18 14 8.1390 -3.6410 -5.9995 19 1 9.5522 -4.0338 -5.7680 20 1 7.8099 -3.8017 -7.4386 21 1 7.9483 -2.2225 -5.6036 22 6 2.1981 -1.1969 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6582 2.1327 -0.0004 27 1 4.1203 2.1328 0.0010 28 1 5.3517 0.0002 0.0093 29 1 3.7454 -3.2612 0.5153 30 1 5.2868 -2.3711 0.5144 31 1 3.7574 -5.7312 -1.0961 32 1 5.2615 -6.4738 -0.5001 33 1 4.5598 -5.0779 0.3522 34 1 6.2236 -6.2095 -2.7447 35 1 4.8051 -5.3445 -3.3836 36 1 6.7991 -6.1187 -6.3811 37 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:41 Heat of formation + Delta-G solvation = -35.535210 kcal Electronic energy + Delta-G solvation = -17661.845176 eV Core-core repulsion = 14915.946261 eV Total energy + Delta-G solvation = -2745.898915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.31402 -34.87837 -34.52444 -33.48025 -32.07382 -31.82570 -27.82389 -27.08398 -26.44591 -23.28401 -22.07592 -21.09775 -20.26116 -16.68883 -16.38479 -16.31117 -15.53933 -15.18259 -14.96680 -14.42904 -14.11526 -13.70929 -13.61782 -13.15567 -12.96737 -12.77254 -12.38560 -12.11275 -11.95365 -11.90298 -11.60089 -11.39823 -11.08017 -11.00128 -10.85849 -10.69601 -10.56323 -10.40639 -9.75349 -9.30304 -8.99042 -8.66369 -8.44060 -8.21811 -7.39680 -5.98544 -3.99997 1.30897 1.44838 2.30725 3.37258 3.39520 3.43256 3.55315 3.87034 4.50051 4.53940 4.81438 4.83380 4.93496 5.18135 5.30371 5.36200 5.39950 5.50456 5.58675 5.64848 5.70036 5.75151 5.78629 5.84499 5.93856 6.15437 6.17458 6.40520 6.53676 6.58322 6.60712 6.70166 6.79635 7.08056 7.57280 7.59236 8.03342 8.36685 9.10754 9.66986 11.12407 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.005010 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.686005 B = 5587.514665 C = 6116.054120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.046 4.046 7 C -0.435 4.435 8 S 1.254 4.746 9 O -0.819 6.819 10 C -0.397 4.397 11 H 0.077 0.923 12 C -0.125 4.125 13 C 0.047 3.953 14 C -0.532 4.532 15 H 0.070 0.930 16 C 0.062 3.938 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.270 1.270 22 C -0.121 4.121 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.260 0.740 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 7.657 12.976 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.130 4.130 5 C -0.139 4.139 6 C -0.047 4.047 7 C -0.566 4.566 8 S 1.452 4.548 9 O -0.814 6.814 10 C -0.516 4.516 11 H 0.095 0.905 12 C -0.184 4.184 13 C 0.009 3.991 14 C -0.570 4.570 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.537 5.537 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.140 4.140 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.342 8.020 12.002 19.656 hybrid contribution 2.874 0.759 0.507 3.016 sum -10.467 8.779 12.509 18.523 Atomic orbital electron populations 1.20782 0.91217 1.02875 1.02088 1.19871 0.95958 0.93101 0.99716 1.20972 0.94149 0.97441 1.02428 1.21073 0.94333 0.97773 0.99838 1.21085 1.00026 0.92205 1.00558 1.19191 0.93456 0.93271 0.98779 1.27124 1.04467 1.00627 1.24402 1.70689 1.13872 0.87020 0.83257 1.93126 1.70540 1.56605 1.61133 1.27423 1.06890 1.12385 1.04931 0.90457 1.21551 1.00070 0.99260 0.97500 1.18855 0.97600 0.96209 0.86477 1.21567 1.29584 1.06963 0.98932 0.91160 1.24933 0.96179 0.95020 0.97763 1.69960 1.45154 1.22211 1.16357 0.86631 0.80830 0.81731 0.79258 1.20807 1.21133 1.19419 1.20933 0.93085 0.97928 1.02018 0.91414 0.91711 0.91241 0.86384 0.86276 0.86434 0.86180 0.89433 0.91639 0.92350 0.93545 0.95319 0.95489 0.93016 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.11 -1.46 10.05 -39.59 -0.40 -1.86 16 5 C -0.12 -1.80 9.70 -39.59 -0.38 -2.19 16 6 C -0.05 -0.66 5.14 -104.62 -0.54 -1.19 16 7 C -0.43 -6.09 5.45 36.01 0.20 -5.90 16 8 S 1.25 22.58 12.43 -107.50 -1.34 21.24 16 9 O -0.82 -20.19 16.08 -35.23 -0.57 -20.75 16 10 C -0.40 -7.75 2.84 -26.73 -0.08 -7.83 16 11 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 12 C -0.13 -1.81 8.94 37.16 0.33 -1.48 16 13 C 0.05 1.17 4.45 -27.88 -0.12 1.05 16 14 C -0.53 -15.59 8.24 -34.44 -0.28 -15.87 16 15 H 0.07 2.16 6.23 -52.48 -0.33 1.83 16 16 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 18 Si 0.89 23.19 29.54 -169.99 -5.02 18.16 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 21 H -0.27 -7.22 7.11 56.52 0.40 -6.82 16 22 C -0.12 -1.46 9.36 -39.59 -0.37 -1.83 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.12 1.29 6.84 -51.92 -0.36 0.93 16 30 H 0.09 1.29 8.08 -51.92 -0.42 0.87 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.53 6.51 -51.93 -0.34 0.19 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -35.93 321.11 -9.37 -45.30 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.64 Total: -3.05 kcal Atomic # 6 Polarization: -37.01 SS G_CDS: -2.38 Total: -39.39 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.57 Total: -20.75 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.16 kcal Atomic # 16 Polarization: 22.58 SS G_CDS: -1.34 Total: 21.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.93 -9.37 -45.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.768 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds