Wall clock time and date at job start Mon Mar 30 2020 06:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38262 * 119.99631 * 2 1 4 4 C 1.38213 * 119.99923 * 179.97438 * 3 2 1 5 5 C 1.38252 * 119.99783 * 359.80890 * 4 3 2 6 6 C 1.38212 * 120.00167 * 0.42003 * 5 4 3 7 7 C 1.50702 * 120.00054 * 179.80620 * 6 5 4 8 8 S 1.81399 * 109.47410 * 269.72912 * 7 6 5 9 9 O 1.42095 * 109.46891 * 63.61361 * 8 7 6 10 10 C 1.81405 * 102.99706 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.47340 * 294.99656 * 10 8 7 12 12 C 1.53000 * 109.47268 * 55.00295 * 10 8 7 13 13 C 1.53007 * 109.46788 * 175.00114 * 10 8 7 14 14 C 1.50708 * 109.47101 * 64.99834 * 13 10 8 15 15 H 1.08006 * 119.99725 * 0.02562 * 14 13 10 16 16 C 1.37867 * 119.99846 * 180.02562 * 14 13 10 17 17 N 1.31517 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00032 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47563 * 89.99729 * 18 16 14 20 20 H 1.48507 * 109.47325 * 209.99970 * 18 16 14 21 21 H 1.48495 * 109.46864 * 329.99428 * 18 16 14 22 22 C 1.38204 * 120.00225 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.46910 * 270.02096 * 1 2 3 24 24 H 1.08994 * 109.47099 * 30.02440 * 1 2 3 25 25 H 1.09003 * 109.46643 * 150.02055 * 1 2 3 26 26 H 1.07999 * 119.99907 * 359.97438 * 3 2 1 27 27 H 1.08000 * 119.99788 * 180.02562 * 4 3 2 28 28 H 1.08002 * 120.00169 * 180.23564 * 5 4 3 29 29 H 1.09004 * 109.46923 * 149.72898 * 7 6 5 30 30 H 1.09004 * 109.46818 * 29.73448 * 7 6 5 31 31 H 1.08995 * 109.46888 * 59.99829 * 12 10 8 32 32 H 1.09000 * 109.46813 * 180.02562 * 12 10 8 33 33 H 1.08998 * 109.46475 * 299.99789 * 12 10 8 34 34 H 1.08997 * 109.46840 * 184.99984 * 13 10 8 35 35 H 1.09005 * 109.47096 * 305.00152 * 13 10 8 36 36 H 0.97001 * 119.99679 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.00013 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0051 6 6 3.5807 -1.1968 0.0003 7 6 4.3343 -2.5019 0.0008 8 16 4.6362 -3.0265 -1.7092 9 8 5.4736 -2.0774 -2.3550 10 6 5.5369 -4.5878 -1.5039 11 1 6.4997 -4.3924 -1.0317 12 6 4.7201 -5.5359 -0.6238 13 6 5.7620 -5.2306 -2.8741 14 6 6.6684 -4.3526 -3.6981 15 1 7.0464 -3.4288 -3.2855 16 6 7.0149 -4.7288 -4.9784 17 7 6.5550 -5.8539 -5.4804 18 14 8.1390 -3.6410 -5.9995 19 1 9.5522 -4.0338 -5.7680 20 1 7.8099 -3.8017 -7.4386 21 1 7.9483 -2.2225 -5.6036 22 6 2.1981 -1.1969 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6582 2.1327 -0.0004 27 1 4.1203 2.1328 0.0010 28 1 5.3517 0.0002 0.0093 29 1 3.7454 -3.2612 0.5153 30 1 5.2868 -2.3711 0.5144 31 1 3.7574 -5.7312 -1.0961 32 1 5.2615 -6.4738 -0.5001 33 1 4.5598 -5.0779 0.3522 34 1 6.2236 -6.2095 -2.7447 35 1 4.8051 -5.3445 -3.3836 36 1 6.7991 -6.1187 -6.3811 37 1 1.6582 -2.1322 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:40 Heat of formation + Delta-G solvation = -58.477718 kcal Electronic energy + Delta-G solvation = -17662.840038 eV Core-core repulsion = 14915.946261 eV Total energy + Delta-G solvation = -2746.893776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25772 -36.58586 -36.34680 -34.45164 -33.99437 -32.84417 -29.49385 -28.12205 -27.46610 -25.18984 -23.05179 -22.55028 -21.46065 -18.58079 -18.13806 -17.36661 -16.82583 -16.65154 -16.37259 -15.96743 -15.46832 -15.08345 -14.55053 -14.44088 -14.08425 -13.95115 -13.76067 -13.64069 -13.35065 -13.14061 -12.89804 -12.81269 -12.67281 -12.51085 -12.35635 -12.26482 -11.98569 -11.82691 -11.54607 -11.15553 -10.81392 -10.56225 -9.63308 -9.50011 -8.87444 -8.25856 -6.32427 0.20755 0.49105 0.99413 1.27203 1.29075 1.43652 1.98553 2.36123 2.88235 3.03614 3.15626 3.75383 3.89269 4.07183 4.14966 4.27209 4.32913 4.39969 4.55133 4.64282 4.68306 4.74689 4.87046 4.98050 5.03411 5.11543 5.17619 5.24350 5.38711 5.40282 5.49153 5.55945 5.58831 5.67812 5.72942 5.78322 6.15608 6.18810 6.83460 7.36684 8.84946 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.005010 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.686005 B = 5587.514665 C = 6116.054120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.153 4.153 6 C -0.070 4.070 7 C -0.410 4.410 8 S 1.278 4.722 9 O -0.899 6.899 10 C -0.395 4.395 11 H 0.053 0.947 12 C -0.124 4.124 13 C 0.048 3.952 14 C -0.549 4.549 15 H 0.047 0.953 16 C 0.015 3.985 17 N -0.920 5.920 18 Si 0.940 3.060 19 H -0.271 1.271 20 H -0.267 1.267 21 H -0.286 1.286 22 C -0.121 4.121 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.145 0.855 27 H 0.130 0.870 28 H 0.094 0.906 29 H 0.167 0.833 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.006 0.994 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.819 7.766 14.353 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.173 4.173 6 C -0.072 4.072 7 C -0.545 4.545 8 S 1.480 4.520 9 O -0.894 6.894 10 C -0.514 4.514 11 H 0.072 0.928 12 C -0.182 4.182 13 C 0.010 3.990 14 C -0.588 4.588 15 H 0.065 0.935 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.766 3.234 19 H -0.197 1.197 20 H -0.192 1.192 21 H -0.212 1.212 22 C -0.140 4.140 23 H 0.102 0.898 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.162 0.838 27 H 0.148 0.852 28 H 0.112 0.888 29 H 0.185 0.815 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.027 8.097 13.335 22.367 hybrid contribution 3.619 0.818 0.219 3.717 sum -12.408 8.915 13.554 20.425 Atomic orbital electron populations 1.20863 0.88483 1.04066 1.03419 1.20359 0.97960 0.92583 0.97915 1.21368 0.93563 0.99095 1.01112 1.21301 0.95449 0.97577 0.99999 1.21176 0.99326 0.93944 1.02841 1.19308 0.94725 0.92569 1.00570 1.26854 1.05071 1.02278 1.20336 1.69536 1.11834 0.85222 0.85399 1.93019 1.71612 1.58876 1.65905 1.27331 1.07221 1.14217 1.02586 0.92795 1.21623 1.00199 0.97905 0.98441 1.18731 0.96319 0.94770 0.89202 1.21847 1.30351 1.06697 0.99866 0.93488 1.25629 0.97609 0.96300 0.98874 1.70016 1.46057 1.23099 1.16910 0.85831 0.79756 0.79078 0.78755 1.19656 1.19177 1.21166 1.21353 0.92077 0.99917 1.00619 0.89844 0.90750 0.89955 0.83771 0.85156 0.88755 0.81516 0.90317 0.88922 0.92759 0.89676 0.97567 0.95551 0.92528 0.81952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.59 16 2 C -0.09 -1.70 5.88 -19.86 -0.12 -1.81 16 3 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16 4 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 5 C -0.15 -4.72 9.70 22.27 0.22 -4.50 16 6 C -0.07 -1.92 5.14 -19.86 -0.10 -2.02 16 7 C -0.41 -10.75 5.45 71.24 0.39 -10.36 16 8 S 1.28 46.15 12.43 -56.49 -0.70 45.45 16 9 O -0.90 -46.58 16.08 -148.98 -2.40 -48.98 16 10 C -0.39 -15.47 2.84 30.60 0.09 -15.38 16 11 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.12 -3.23 8.94 71.98 0.64 -2.59 16 13 C 0.05 2.46 4.45 29.85 0.13 2.59 16 14 C -0.55 -33.39 8.24 25.60 0.21 -33.18 16 15 H 0.05 3.04 6.23 -2.91 -0.02 3.02 16 16 C 0.01 0.89 5.46 84.65 0.46 1.35 16 17 N -0.92 -56.31 13.29 21.44 0.28 -56.02 16 18 Si 0.94 48.64 29.54 68.60 2.03 50.66 16 19 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 21 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 22 C -0.12 -2.52 9.36 22.27 0.21 -2.32 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 25 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 26 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 27 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 28 H 0.09 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.17 2.76 6.84 -2.39 -0.02 2.75 16 30 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.57 6.51 -2.39 -0.02 1.56 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -82.60 321.11 3.53 -79.07 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: 1.03 Total: 4.19 kcal Atomic # 6 Polarization: -77.65 SS G_CDS: 3.28 Total: -74.37 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.40 Total: -48.98 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.66 kcal Atomic # 16 Polarization: 46.15 SS G_CDS: -0.70 Total: 45.45 kcal Total: -82.60 3.53 -79.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.595 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds