Wall clock time and date at job start Mon Mar 30 2020 06:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 S 1.81397 * 109.47289 * 270.03042 * 7 6 5 9 9 O 1.42094 * 109.47137 * 63.61045 * 8 7 6 10 10 C 1.81401 * 102.99678 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47445 * 65.00277 * 10 8 7 12 12 C 1.53002 * 109.47264 * 304.99689 * 10 8 7 13 13 C 1.53005 * 109.46831 * 184.99440 * 10 8 7 14 14 C 1.50693 * 109.47510 * 295.00009 * 13 10 8 15 15 H 1.08006 * 119.99957 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00124 * 179.97438 * 14 13 10 17 17 N 1.31505 * 119.99935 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99735 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47081 * 60.00315 * 18 16 14 20 20 H 1.48505 * 109.46860 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47467 * 299.99859 * 18 16 14 22 22 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 26 26 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 28 28 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 29 29 H 1.09005 * 109.46390 * 30.03086 * 7 6 5 30 30 H 1.08992 * 109.46973 * 150.02255 * 7 6 5 31 31 H 1.09001 * 109.46756 * 60.00350 * 12 10 8 32 32 H 1.08997 * 109.46844 * 180.02562 * 12 10 8 33 33 H 1.08993 * 109.46667 * 300.00239 * 12 10 8 34 34 H 1.08993 * 109.46820 * 55.00450 * 13 10 8 35 35 H 1.09007 * 109.46945 * 174.99866 * 13 10 8 36 36 H 0.97003 * 119.99951 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.00154 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0123 8 16 4.6358 -3.0177 -1.7251 9 8 5.4732 -2.0652 -2.3659 10 6 5.5378 -4.5792 -1.5282 11 1 4.8877 -5.3176 -1.0589 12 6 6.7682 -4.3501 -0.6482 13 6 5.9804 -5.0890 -2.9012 14 6 4.7662 -5.4311 -3.7255 15 1 3.7775 -5.2979 -3.3117 16 6 4.9174 -5.9133 -5.0084 17 7 6.1212 -6.0750 -5.5125 18 14 3.4121 -6.3380 -6.0299 19 1 2.5706 -5.1262 -6.1989 20 1 3.8419 -6.8327 -7.3626 21 1 2.6275 -7.3934 -5.3402 22 6 2.1981 -1.1970 -0.0058 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0085 28 1 5.3518 -0.0001 -0.0010 29 1 5.2867 -2.3741 0.5019 30 1 3.7453 -3.2640 0.4982 31 1 6.4527 -3.9869 0.3299 32 1 7.3103 -5.2883 -0.5303 33 1 7.4181 -3.6117 -1.1176 34 1 6.5570 -4.3149 -3.4076 35 1 6.5976 -5.9789 -2.7767 36 1 6.2275 -6.4146 -6.4149 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:46 Heat of formation + Delta-G solvation = -38.430492 kcal Electronic energy + Delta-G solvation = -17637.972318 eV Core-core repulsion = 14891.947854 eV Total energy + Delta-G solvation = -2746.024463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30526 -35.02457 -34.49045 -33.46911 -32.14782 -31.84946 -27.91493 -27.07502 -26.46883 -23.36357 -22.08232 -21.00298 -20.25696 -16.87132 -16.43943 -16.35345 -15.47356 -15.34669 -14.98036 -14.53637 -14.09588 -13.71218 -13.38632 -13.20747 -12.93994 -12.79037 -12.32954 -12.13847 -12.05398 -11.91266 -11.79809 -11.44307 -11.21951 -11.00505 -10.87942 -10.80491 -10.58754 -10.36761 -9.63661 -9.46178 -9.20168 -8.66368 -8.48894 -8.30491 -7.36604 -6.05910 -4.11799 1.31450 1.45624 2.30579 3.31878 3.37259 3.37762 3.38989 3.87582 4.40679 4.45706 4.82270 4.83079 4.94064 5.18958 5.31179 5.32153 5.35826 5.52181 5.58241 5.64321 5.70387 5.71667 5.77822 5.85258 5.89902 6.15873 6.18587 6.37340 6.53861 6.57405 6.62032 6.70606 6.79506 7.08772 7.55902 7.62561 7.89823 8.25247 8.94175 9.53914 11.05148 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.005253 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.399176 B = 5328.615067 C = 6116.249644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.131 4.131 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.046 4.046 7 C -0.436 4.436 8 S 1.267 4.733 9 O -0.839 6.839 10 C -0.394 4.394 11 H 0.112 0.888 12 C -0.146 4.146 13 C 0.044 3.956 14 C -0.538 4.538 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.120 4.120 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 9.101 12.821 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.131 4.131 5 C -0.139 4.139 6 C -0.047 4.047 7 C -0.568 4.568 8 S 1.465 4.535 9 O -0.834 6.834 10 C -0.513 4.513 11 H 0.130 0.870 12 C -0.204 4.204 13 C 0.006 3.994 14 C -0.576 4.576 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.139 4.139 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.271 9.507 11.843 18.334 hybrid contribution 1.417 -0.123 0.499 1.508 sum -8.854 9.384 12.343 17.855 Atomic orbital electron populations 1.20787 0.91208 1.02912 1.02101 1.19877 0.95981 0.93093 0.99636 1.20972 0.94151 0.97435 1.02422 1.21068 0.94333 0.97736 0.99943 1.21066 0.99952 0.92200 1.00727 1.19186 0.93470 0.93253 0.98793 1.27110 1.04523 1.00668 1.24451 1.71180 1.13138 0.86364 0.82793 1.93034 1.71127 1.56745 1.62488 1.27482 1.04771 1.14336 1.04689 0.87015 1.21883 0.98353 1.02374 0.97779 1.18877 0.97243 0.96763 0.86565 1.21230 0.92670 1.44859 0.98866 0.91682 1.25026 0.95928 0.95233 0.97809 1.69953 1.21573 1.44921 1.16231 0.86666 0.83009 0.79090 0.79442 1.19698 1.21259 1.19881 1.20961 0.93124 0.97997 1.01817 0.91401 0.91707 0.91197 0.86376 0.86278 0.86480 0.89191 0.86211 0.93725 0.92210 0.92843 0.95875 0.95551 0.92696 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.61 16 3 C -0.13 -1.54 9.70 -39.58 -0.38 -1.92 16 4 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 5 C -0.12 -1.80 9.70 -39.58 -0.38 -2.18 16 6 C -0.05 -0.66 5.14 -104.62 -0.54 -1.20 16 7 C -0.44 -6.17 5.45 36.01 0.20 -5.98 16 8 S 1.27 23.23 11.96 -107.50 -1.29 21.94 16 9 O -0.84 -20.22 18.07 -35.23 -0.64 -20.86 16 10 C -0.39 -7.72 2.83 -26.73 -0.08 -7.79 16 11 H 0.11 1.91 8.14 -51.92 -0.42 1.48 16 12 C -0.15 -2.62 8.94 37.16 0.33 -2.28 16 13 C 0.04 1.12 4.44 -27.88 -0.12 0.99 16 14 C -0.54 -14.29 8.53 -34.44 -0.29 -14.58 16 15 H 0.07 1.54 7.60 -52.48 -0.40 1.14 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 18 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 22 C -0.12 -1.50 9.36 -39.58 -0.37 -1.87 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 25 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.09 1.30 6.84 -51.92 -0.36 0.94 16 30 H 0.12 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -34.02 324.21 -9.42 -43.44 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.71 Total: -0.11 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: -2.39 Total: -39.22 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.64 Total: -20.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 23.23 SS G_CDS: -1.29 Total: 21.94 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.02 -9.42 -43.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.012 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds