Wall clock time and date at job start Mon Mar 30 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38258 * 119.99551 * 0.46928 * 4 3 2 6 6 C 1.38216 * 120.00160 * 359.76035 * 5 4 3 7 7 C 1.50701 * 120.00078 * 179.97438 * 6 5 4 8 8 S 1.81397 * 109.47289 * 270.03042 * 7 6 5 9 9 O 1.42094 * 109.47137 * 63.61045 * 8 7 6 10 10 C 1.81401 * 102.99678 * 179.97438 * 8 7 6 11 11 H 1.09002 * 109.47445 * 65.00277 * 10 8 7 12 12 C 1.53002 * 109.47264 * 304.99689 * 10 8 7 13 13 C 1.53005 * 109.46831 * 184.99440 * 10 8 7 14 14 C 1.50693 * 109.47510 * 295.00009 * 13 10 8 15 15 H 1.08006 * 119.99957 * 0.02562 * 14 13 10 16 16 C 1.37879 * 120.00124 * 179.97438 * 14 13 10 17 17 N 1.31505 * 119.99935 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99735 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47081 * 60.00315 * 18 16 14 20 20 H 1.48505 * 109.46860 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47467 * 299.99859 * 18 16 14 22 22 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 26 26 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00140 * 180.25074 * 4 3 2 28 28 H 1.08002 * 120.00008 * 179.78995 * 5 4 3 29 29 H 1.09005 * 109.46390 * 30.03086 * 7 6 5 30 30 H 1.08992 * 109.46973 * 150.02255 * 7 6 5 31 31 H 1.09001 * 109.46756 * 60.00350 * 12 10 8 32 32 H 1.08997 * 109.46844 * 180.02562 * 12 10 8 33 33 H 1.08993 * 109.46667 * 300.00239 * 12 10 8 34 34 H 1.08993 * 109.46820 * 55.00450 * 13 10 8 35 35 H 1.09007 * 109.46945 * 174.99866 * 13 10 8 36 36 H 0.97003 * 119.99951 * 179.97438 * 17 16 14 37 37 H 1.07997 * 120.00154 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2717 0.0000 -0.0010 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0123 8 16 4.6358 -3.0177 -1.7251 9 8 5.4732 -2.0652 -2.3659 10 6 5.5378 -4.5792 -1.5282 11 1 4.8877 -5.3176 -1.0589 12 6 6.7682 -4.3501 -0.6482 13 6 5.9804 -5.0890 -2.9012 14 6 4.7662 -5.4311 -3.7255 15 1 3.7775 -5.2979 -3.3117 16 6 4.9174 -5.9133 -5.0084 17 7 6.1212 -6.0750 -5.5125 18 14 3.4121 -6.3380 -6.0299 19 1 2.5706 -5.1262 -6.1989 20 1 3.8419 -6.8327 -7.3626 21 1 2.6275 -7.3934 -5.3402 22 6 2.1981 -1.1970 -0.0058 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0085 28 1 5.3518 -0.0001 -0.0010 29 1 5.2867 -2.3741 0.5019 30 1 3.7453 -3.2640 0.4982 31 1 6.4527 -3.9869 0.3299 32 1 7.3103 -5.2883 -0.5303 33 1 7.4181 -3.6117 -1.1176 34 1 6.5570 -4.3149 -3.4076 35 1 6.5976 -5.9789 -2.7767 36 1 6.2275 -6.4146 -6.4149 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:45 Heat of formation + Delta-G solvation = -59.925953 kcal Electronic energy + Delta-G solvation = -17638.904431 eV Core-core repulsion = 14891.947854 eV Total energy + Delta-G solvation = -2746.956577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24878 -36.72647 -36.31011 -34.44840 -34.02492 -32.83164 -29.65090 -28.12129 -27.47114 -25.27781 -23.07675 -22.46560 -21.48551 -18.50714 -18.35103 -17.36930 -16.91499 -16.56565 -16.40100 -15.96567 -15.43378 -14.89555 -14.64689 -14.32511 -14.04535 -13.99615 -13.85973 -13.61251 -13.57292 -13.28803 -12.98425 -12.85471 -12.62674 -12.54415 -12.34616 -12.14770 -11.96194 -11.81691 -11.48646 -11.17995 -10.96182 -10.53645 -9.63966 -9.50333 -8.84053 -8.16194 -6.29860 0.20708 0.49842 0.98377 1.49133 1.54002 1.60013 1.96183 2.47408 2.87936 3.04214 3.19950 3.76225 3.88787 4.07831 4.08839 4.14815 4.28315 4.34630 4.41486 4.56047 4.65894 4.73664 4.81435 4.89286 4.97377 5.02834 5.07394 5.08755 5.24812 5.39291 5.43152 5.53159 5.56596 5.68280 5.73675 5.80311 6.15924 6.16298 6.87706 7.41887 8.96677 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021543 B = 0.005253 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.399176 B = 5328.615067 C = 6116.249644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.125 4.125 5 C -0.152 4.152 6 C -0.071 4.071 7 C -0.412 4.412 8 S 1.282 4.718 9 O -0.910 6.910 10 C -0.393 4.393 11 H 0.149 0.851 12 C -0.145 4.145 13 C 0.047 3.953 14 C -0.545 4.545 15 H 0.098 0.902 16 C -0.005 4.005 17 N -0.942 5.942 18 Si 0.964 3.036 19 H -0.257 1.257 20 H -0.294 1.294 21 H -0.250 1.250 22 C -0.123 4.123 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.145 0.855 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.022 0.978 34 H -0.031 1.031 35 H -0.003 1.003 36 H 0.262 0.738 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 9.089 14.705 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.171 4.171 6 C -0.072 4.072 7 C -0.548 4.548 8 S 1.484 4.516 9 O -0.906 6.906 10 C -0.511 4.511 11 H 0.167 0.833 12 C -0.203 4.203 13 C 0.009 3.991 14 C -0.583 4.583 15 H 0.116 0.884 16 C -0.203 4.203 17 N -0.582 5.582 18 Si 0.787 3.213 19 H -0.182 1.182 20 H -0.221 1.221 21 H -0.174 1.174 22 C -0.142 4.142 23 H 0.101 0.899 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.162 0.838 27 H 0.151 0.849 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.183 0.817 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.041 0.959 34 H -0.012 1.012 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.330 9.476 13.711 21.980 hybrid contribution 2.651 0.004 0.071 2.652 sum -11.678 9.480 13.781 20.401 Atomic orbital electron populations 1.20864 0.88640 1.03997 1.03392 1.20346 0.97895 0.92642 0.98012 1.21369 0.93684 0.98984 1.01105 1.21318 0.95354 0.97672 0.99916 1.21184 0.99457 0.93761 1.02711 1.19305 0.94618 0.92705 1.00562 1.26843 1.05418 1.02230 1.20273 1.70122 1.11318 0.84824 0.85334 1.92948 1.72033 1.58781 1.66855 1.27409 1.06269 1.15943 1.01505 0.83327 1.21889 0.97448 1.01899 0.99100 1.18687 0.96467 0.94017 0.89938 1.21831 0.94127 1.43320 0.99008 0.88412 1.26153 0.99199 0.95301 0.99640 1.70147 1.24573 1.46805 1.16633 0.85510 0.78945 0.79767 0.77096 1.18159 1.22051 1.17422 1.21355 0.92296 0.99831 1.00723 0.89858 0.90691 0.90159 0.83767 0.84946 0.88358 0.89419 0.81728 0.89742 0.91816 0.95899 1.01224 0.98432 0.92974 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 2 C -0.09 -1.75 5.88 -19.86 -0.12 -1.87 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 4 C -0.12 -3.10 10.05 22.27 0.22 -2.88 16 5 C -0.15 -4.52 9.70 22.27 0.22 -4.31 16 6 C -0.07 -1.91 5.14 -19.87 -0.10 -2.01 16 7 C -0.41 -10.63 5.45 71.24 0.39 -10.25 16 8 S 1.28 46.34 11.96 -56.49 -0.68 45.66 16 9 O -0.91 -45.97 18.07 -148.98 -2.69 -48.66 16 10 C -0.39 -15.22 2.83 30.60 0.09 -15.13 16 11 H 0.15 4.62 8.14 -2.39 -0.02 4.60 16 12 C -0.15 -5.20 8.94 71.98 0.64 -4.56 16 13 C 0.05 2.50 4.44 29.85 0.13 2.63 16 14 C -0.55 -29.06 8.53 25.60 0.22 -28.84 16 15 H 0.10 4.42 7.60 -2.91 -0.02 4.40 16 16 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 17 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 18 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 22 C -0.12 -2.65 9.36 22.27 0.21 -2.44 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 25 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 26 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 27 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.10 3.16 8.06 -2.91 -0.02 3.14 16 29 H 0.09 2.35 6.84 -2.39 -0.02 2.34 16 30 H 0.16 2.77 8.09 -2.39 -0.02 2.75 16 31 H 0.08 2.32 6.51 -2.39 -0.02 2.30 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 34 H -0.03 -1.94 8.08 -2.39 -0.02 -1.96 16 35 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 36 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -79.83 324.21 3.26 -76.57 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.03 Total: 13.22 kcal Atomic # 6 Polarization: -76.02 SS G_CDS: 3.29 Total: -72.73 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.15 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -2.69 Total: -48.66 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.68 Total: 45.66 kcal Total: -79.83 3.26 -76.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.642 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds