Wall clock time and date at job start Mon Mar 30 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47401 * 269.98368 * 7 6 5 9 9 O 1.42104 * 109.46577 * 296.38648 * 8 7 6 10 10 C 1.81400 * 102.99776 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47366 * 65.00242 * 10 8 7 12 12 C 1.52993 * 109.47350 * 305.00008 * 10 8 7 13 13 C 1.53004 * 109.46750 * 184.99558 * 10 8 7 14 14 C 1.50697 * 109.47075 * 294.99982 * 13 10 8 15 15 H 1.07994 * 120.00496 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99697 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47065 * 119.99996 * 18 16 14 21 21 H 1.48497 * 109.47229 * 239.99850 * 18 16 14 22 22 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 26 26 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 28 28 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 29 29 H 1.09003 * 109.46422 * 29.98264 * 7 6 5 30 30 H 1.08998 * 109.46589 * 149.97838 * 7 6 5 31 31 H 1.08999 * 109.47500 * 180.02562 * 12 10 8 32 32 H 1.09006 * 109.46671 * 300.00152 * 12 10 8 33 33 H 1.08994 * 109.47337 * 59.99924 * 12 10 8 34 34 H 1.09000 * 109.46602 * 55.00269 * 13 10 8 35 35 H 1.09004 * 109.46549 * 174.99728 * 13 10 8 36 36 H 0.96995 * 120.00095 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.00154 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0117 8 16 4.6359 -3.0184 -1.7243 9 8 3.3945 -3.2662 -2.3699 10 6 5.5378 -4.5798 -1.5268 11 1 4.8878 -5.3181 -1.0572 12 6 6.7681 -4.3504 -0.6468 13 6 5.9805 -5.0902 -2.8996 14 6 4.7662 -5.4326 -3.7238 15 1 3.7776 -5.2992 -3.3101 16 6 4.9174 -5.9153 -5.0064 17 7 6.1213 -6.0772 -5.5105 18 14 3.4123 -6.3391 -6.0284 19 1 2.1849 -6.0683 -5.2376 20 1 3.4004 -5.5092 -7.2598 21 1 3.4551 -7.7761 -6.4003 22 6 2.1981 -1.1970 -0.0058 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0089 28 1 5.3517 0.0000 0.0002 29 1 5.2867 -2.3739 0.5023 30 1 3.7452 -3.2639 0.4991 31 1 7.3103 -5.2885 -0.5285 32 1 7.4182 -3.6122 -1.1166 33 1 6.4527 -3.9869 0.3311 34 1 6.5571 -4.3162 -3.4062 35 1 6.5977 -5.9799 -2.7747 36 1 6.2277 -6.4164 -6.4129 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695892345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:48 Heat of formation + Delta-G solvation = -35.615914 kcal Electronic energy + Delta-G solvation = -17685.577688 eV Core-core repulsion = 14939.675273 eV Total energy + Delta-G solvation = -2745.902414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.30756 -34.87425 -34.52595 -33.47899 -32.06629 -31.81532 -27.82754 -27.05032 -26.46748 -23.28480 -22.11368 -21.02911 -20.27825 -16.69560 -16.38620 -16.31059 -15.52644 -15.18518 -14.97627 -14.43661 -14.13804 -13.64985 -13.53103 -13.24770 -12.93705 -12.77021 -12.34653 -12.14455 -11.92878 -11.91074 -11.60393 -11.38967 -11.07725 -10.99761 -10.86637 -10.70505 -10.53539 -10.41243 -9.75783 -9.30326 -8.97768 -8.66644 -8.43643 -8.21881 -7.39815 -5.98858 -4.00161 1.30899 1.45303 2.30848 3.36035 3.39567 3.43577 3.55270 3.87072 4.51200 4.53720 4.77535 4.86190 4.97126 5.18847 5.32142 5.35989 5.39597 5.52657 5.57132 5.64181 5.72835 5.77602 5.79323 5.86469 5.94183 6.15969 6.19051 6.40470 6.51169 6.58087 6.63060 6.70461 6.79650 7.08416 7.57329 7.59144 8.03245 8.36611 9.11001 9.66814 11.12154 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.005302 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.593478 B = 5279.330621 C = 6101.932677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.046 4.046 7 C -0.434 4.434 8 S 1.254 4.746 9 O -0.819 6.819 10 C -0.397 4.397 11 H 0.077 0.923 12 C -0.125 4.125 13 C 0.046 3.954 14 C -0.531 4.531 15 H 0.071 0.929 16 C 0.062 3.938 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.285 1.285 22 C -0.114 4.114 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 14.189 13.052 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.132 4.132 5 C -0.145 4.145 6 C -0.048 4.048 7 C -0.566 4.566 8 S 1.452 4.548 9 O -0.814 6.814 10 C -0.516 4.516 11 H 0.095 0.905 12 C -0.184 4.184 13 C 0.008 3.992 14 C -0.569 4.569 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.537 5.537 18 Si 0.717 3.283 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.133 4.133 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.918 14.566 12.085 19.023 hybrid contribution -1.961 -2.033 0.483 2.865 sum -3.879 12.533 12.568 18.168 Atomic orbital electron populations 1.20795 0.91435 1.02892 1.02025 1.19871 0.95986 0.93088 0.99442 1.20975 0.94421 0.97185 1.02445 1.21082 0.94181 0.97872 1.00097 1.21049 1.00119 0.91595 1.01738 1.19196 0.93222 0.93523 0.98811 1.27122 1.05358 0.99687 1.24437 1.70691 0.99627 1.01299 0.83224 1.93125 1.43310 1.83797 1.61192 1.27420 1.04650 1.14632 1.04920 0.90459 1.21551 0.96946 1.02394 0.97497 1.18859 0.97042 0.96836 0.86444 1.21605 0.93578 1.43021 0.98746 0.91103 1.24942 0.95752 0.95461 0.97797 1.69967 1.21170 1.46426 1.16107 0.86559 0.83829 0.77679 0.80253 1.19519 1.20851 1.21156 1.20980 0.93787 0.97760 1.00811 0.91409 0.91579 0.91448 0.86382 0.85973 0.85344 0.86154 0.89469 0.92351 0.91641 0.93538 0.95489 0.95309 0.93068 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.08 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.13 -1.53 9.70 -39.58 -0.38 -1.91 16 4 C -0.11 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.13 -1.50 9.70 -39.58 -0.38 -1.88 16 6 C -0.05 -0.66 5.14 -104.62 -0.54 -1.20 16 7 C -0.43 -6.09 5.45 36.01 0.20 -5.89 16 8 S 1.25 22.54 12.43 -107.50 -1.34 21.20 16 9 O -0.82 -20.13 16.08 -35.23 -0.57 -20.70 16 10 C -0.40 -7.75 2.84 -26.73 -0.08 -7.82 16 11 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 12 C -0.13 -1.81 8.94 37.15 0.33 -1.48 16 13 C 0.05 1.16 4.45 -27.88 -0.12 1.04 16 14 C -0.53 -15.55 8.25 -34.44 -0.28 -15.83 16 15 H 0.07 2.18 6.23 -52.49 -0.33 1.85 16 16 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 17 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 18 Si 0.89 23.22 29.54 -169.99 -5.02 18.19 16 19 H -0.27 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 C -0.11 -1.73 9.36 -39.58 -0.37 -2.10 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 25 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 26 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 28 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.12 1.28 6.84 -51.92 -0.36 0.93 16 30 H 0.09 1.28 8.09 -51.93 -0.42 0.86 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.53 6.51 -51.93 -0.34 0.19 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -35.89 321.10 -9.37 -45.27 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.64 Total: -2.87 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: -2.38 Total: -39.60 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.34 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.57 Total: -20.70 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Atomic # 16 Polarization: 22.54 SS G_CDS: -1.34 Total: 21.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.89 -9.37 -45.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.649 kcal (2) G-P(sol) polarization free energy of solvation -35.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds