Wall clock time and date at job start Mon Mar 30 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.50702 * 120.00031 * 179.97438 * 6 5 4 8 8 S 1.81399 * 109.47401 * 269.98368 * 7 6 5 9 9 O 1.42104 * 109.46577 * 296.38648 * 8 7 6 10 10 C 1.81400 * 102.99776 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47366 * 65.00242 * 10 8 7 12 12 C 1.52993 * 109.47350 * 305.00008 * 10 8 7 13 13 C 1.53004 * 109.46750 * 184.99558 * 10 8 7 14 14 C 1.50697 * 109.47075 * 294.99982 * 13 10 8 15 15 H 1.07994 * 120.00496 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99697 * 179.97438 * 14 13 10 17 17 N 1.31516 * 120.00020 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47066 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47065 * 119.99996 * 18 16 14 21 21 H 1.48497 * 109.47229 * 239.99850 * 18 16 14 22 22 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 23 23 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 24 24 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 25 25 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 26 26 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 27 27 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 28 28 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 29 29 H 1.09003 * 109.46422 * 29.98264 * 7 6 5 30 30 H 1.08998 * 109.46589 * 149.97838 * 7 6 5 31 31 H 1.08999 * 109.47500 * 180.02562 * 12 10 8 32 32 H 1.09006 * 109.46671 * 300.00152 * 12 10 8 33 33 H 1.08994 * 109.47337 * 59.99924 * 12 10 8 34 34 H 1.09000 * 109.46602 * 55.00269 * 13 10 8 35 35 H 1.09004 * 109.46549 * 174.99728 * 13 10 8 36 36 H 0.96995 * 120.00095 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.00154 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 4.3341 -2.5021 -0.0117 8 16 4.6359 -3.0184 -1.7243 9 8 3.3945 -3.2662 -2.3699 10 6 5.5378 -4.5798 -1.5268 11 1 4.8878 -5.3181 -1.0572 12 6 6.7681 -4.3504 -0.6468 13 6 5.9805 -5.0902 -2.8996 14 6 4.7662 -5.4326 -3.7238 15 1 3.7776 -5.2992 -3.3101 16 6 4.9174 -5.9153 -5.0064 17 7 6.1213 -6.0772 -5.5105 18 14 3.4123 -6.3391 -6.0284 19 1 2.1849 -6.0683 -5.2376 20 1 3.4004 -5.5092 -7.2598 21 1 3.4551 -7.7761 -6.4003 22 6 2.1981 -1.1970 -0.0058 23 1 -0.3633 -0.0050 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6583 2.1326 0.0004 27 1 4.1205 2.1326 0.0089 28 1 5.3517 0.0000 0.0002 29 1 5.2867 -2.3739 0.5023 30 1 3.7452 -3.2639 0.4991 31 1 7.3103 -5.2885 -0.5285 32 1 7.4182 -3.6122 -1.1166 33 1 6.4527 -3.9869 0.3311 34 1 6.5571 -4.3162 -3.4062 35 1 6.5977 -5.9799 -2.7747 36 1 6.2277 -6.4164 -6.4129 37 1 1.6581 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695892345.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:48 Heat of formation + Delta-G solvation = -58.605617 kcal Electronic energy + Delta-G solvation = -17686.574596 eV Core-core repulsion = 14939.675273 eV Total energy + Delta-G solvation = -2746.899322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24890 -36.58106 -36.34925 -34.48998 -34.00023 -32.80584 -29.50696 -28.20559 -27.49226 -25.19209 -23.11343 -22.47245 -21.47354 -18.58734 -18.13818 -17.31839 -16.82082 -16.64693 -16.40323 -15.96858 -15.49711 -15.02195 -14.59835 -14.50806 -14.18916 -13.94191 -13.75465 -13.61992 -13.36601 -13.18394 -12.99096 -12.89879 -12.67338 -12.51653 -12.35606 -12.26771 -11.97370 -11.83307 -11.54911 -11.15507 -10.80370 -10.56184 -9.68152 -9.44950 -8.87383 -8.26290 -6.32738 0.22409 0.50269 1.00478 1.26408 1.28506 1.43555 1.98722 2.35716 2.90120 3.03420 3.15818 3.72319 3.91717 4.08657 4.14553 4.26058 4.31732 4.39734 4.48280 4.63657 4.66611 4.74435 4.78013 4.86926 4.94960 5.10810 5.13823 5.21877 5.30572 5.39574 5.49053 5.58629 5.61128 5.67878 5.72051 5.78141 6.17382 6.18660 6.83408 7.36395 8.84698 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022692 B = 0.005302 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.593478 B = 5279.330621 C = 6101.932677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.133 4.133 4 C -0.112 4.112 5 C -0.124 4.124 6 C -0.073 4.073 7 C -0.410 4.410 8 S 1.279 4.721 9 O -0.899 6.899 10 C -0.395 4.395 11 H 0.053 0.947 12 C -0.124 4.124 13 C 0.048 3.952 14 C -0.548 4.548 15 H 0.046 0.954 16 C 0.014 3.986 17 N -0.920 5.920 18 Si 0.941 3.059 19 H -0.287 1.287 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.149 4.149 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.146 0.854 27 H 0.159 0.841 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.026 0.974 35 H 0.006 0.994 36 H 0.266 0.734 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 16.756 14.446 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.130 4.130 5 C -0.143 4.143 6 C -0.074 4.074 7 C -0.545 4.545 8 S 1.480 4.520 9 O -0.894 6.894 10 C -0.514 4.514 11 H 0.071 0.929 12 C -0.182 4.182 13 C 0.010 3.990 14 C -0.586 4.586 15 H 0.065 0.935 16 C -0.184 4.184 17 N -0.561 5.561 18 Si 0.767 3.233 19 H -0.213 1.213 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.168 4.168 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.164 0.836 27 H 0.177 0.823 28 H 0.183 0.817 29 H 0.185 0.815 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.781 17.097 13.432 21.756 hybrid contribution -2.339 -2.710 0.190 3.585 sum -3.119 14.386 13.622 20.057 Atomic orbital electron populations 1.20833 0.90321 1.02982 1.02979 1.20180 0.97186 0.93144 0.99575 1.21394 0.95244 0.97470 1.01001 1.21583 0.94123 0.99112 0.98190 1.21501 1.02008 0.90727 1.00090 1.19330 0.92947 0.94407 1.00748 1.26854 1.07800 0.99542 1.20323 1.69524 0.97751 0.99287 0.85391 1.93018 1.46145 1.84289 1.65976 1.27332 1.06888 1.14589 1.02566 0.92867 1.21622 0.94739 1.03361 0.98443 1.18733 0.95093 0.96038 0.89181 1.21865 0.94040 1.43042 0.99682 0.93536 1.25635 0.98272 0.95641 0.98902 1.70020 1.22341 1.47035 1.16691 0.85767 0.80085 0.78471 0.78987 1.21304 1.19418 1.19411 1.21064 0.94845 0.97714 1.03210 0.89986 0.89754 0.93069 0.83637 0.82318 0.81736 0.81465 0.90513 0.92780 0.88901 0.89674 0.95531 0.97571 0.92532 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.01 71.24 0.71 -1.68 16 2 C -0.10 -2.58 5.88 -19.86 -0.12 -2.70 16 3 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.01 10.05 22.27 0.22 -1.79 16 5 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 6 C -0.07 -1.98 5.14 -19.87 -0.10 -2.08 16 7 C -0.41 -10.76 5.45 71.24 0.39 -10.38 16 8 S 1.28 46.19 12.43 -56.49 -0.70 45.49 16 9 O -0.90 -46.60 16.08 -148.98 -2.40 -49.00 16 10 C -0.40 -15.52 2.84 30.59 0.09 -15.44 16 11 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.12 -3.24 8.94 71.98 0.64 -2.60 16 13 C 0.05 2.45 4.45 29.85 0.13 2.59 16 14 C -0.55 -33.36 8.25 25.60 0.21 -33.15 16 15 H 0.05 3.02 6.23 -2.91 -0.02 3.00 16 16 C 0.01 0.86 5.46 84.65 0.46 1.32 16 17 N -0.92 -56.32 13.29 21.45 0.28 -56.04 16 18 Si 0.94 48.74 29.54 68.60 2.03 50.77 16 19 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 20 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 22 C -0.15 -4.60 9.36 22.27 0.21 -4.40 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 25 H 0.05 1.20 8.09 -2.39 -0.02 1.18 16 26 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 27 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.17 2.76 6.84 -2.39 -0.02 2.75 16 30 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.08 1.58 6.51 -2.39 -0.02 1.56 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.43 16 37 H 0.09 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -83.08 321.10 3.53 -79.55 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.03 Total: 4.27 kcal Atomic # 6 Polarization: -78.33 SS G_CDS: 3.28 Total: -75.04 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -2.40 Total: -49.00 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.03 Total: 50.77 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.70 Total: 45.49 kcal Total: -83.08 3.53 -79.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695892345.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.947 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds