Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 2 1 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 2 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46994 * 60.00204 * 12 10 8 14 14 H 1.48494 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46851 * 300.00753 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 2 23 23 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 28 28 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 29 29 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 7 3.5049 -0.7206 1.2496 7 6 4.3251 0.2386 1.8041 8 6 3.8877 1.3921 2.4700 9 1 2.8306 1.5837 2.5805 10 6 4.8234 2.2973 2.9941 11 7 6.1016 2.0654 2.8610 12 14 4.2405 3.8340 3.8821 13 1 3.4202 3.4454 5.0574 14 1 5.4162 4.6193 4.3362 15 1 3.4216 4.6590 2.9579 16 7 5.5911 -0.0992 1.6095 17 6 5.6533 -1.2583 0.9405 18 6 6.7214 -2.0493 0.4837 19 6 6.4685 -3.2095 -0.1865 20 6 5.1625 -3.6230 -0.4248 21 6 4.0957 -2.8654 0.0127 22 6 4.3268 -1.6829 0.7004 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6765 -0.2073 2.1393 27 1 1.6767 -1.7489 1.2494 28 1 6.7484 2.6913 3.2229 29 1 7.7401 -1.7385 0.6623 30 1 7.2921 -3.8147 -0.5355 31 1 4.9817 -4.5452 -0.9570 32 1 3.0843 -3.1933 -0.1768 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704741780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -38.002375 kcal Electronic energy + Delta-G solvation = -20507.509377 eV Core-core repulsion = 17104.122748 eV Total energy + Delta-G solvation = -3403.386629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.46500 -46.47270 -40.34902 -36.14024 -33.98818 -33.28060 -31.26290 -29.29039 -28.62012 -26.11535 -25.79114 -21.81332 -21.33530 -20.67602 -19.59089 -17.26290 -17.10967 -16.46630 -16.26416 -16.04755 -15.17728 -14.83029 -14.03262 -13.56878 -13.50988 -13.09092 -13.06637 -12.81616 -12.69681 -12.60128 -12.52865 -12.05803 -11.93975 -11.55228 -11.37590 -11.07208 -11.02054 -10.60777 -10.42666 -10.38149 -10.22860 -9.35308 -9.00688 -7.92365 -7.25679 -6.88583 -6.68305 -4.62926 2.27036 2.68171 3.00414 3.02629 3.04075 3.65390 3.88844 3.99927 4.16976 4.44561 4.59373 4.85891 5.01783 5.19883 5.44822 5.56725 5.64444 5.66559 5.77780 5.85714 5.88437 6.04813 6.38232 6.54996 6.71351 6.83241 6.98637 7.23853 7.45162 7.62069 7.68955 7.89563 7.95243 8.30188 8.61244 8.96199 9.93081 10.20570 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.009792 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.656292 B = 2858.790785 C = 4372.653024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.267 3.733 3 F -0.186 7.186 4 F -0.199 7.199 5 C 0.095 3.905 6 N -0.540 5.540 7 C 0.424 3.576 8 C -0.430 4.430 9 H 0.086 0.914 10 C 0.076 3.924 11 N -0.714 5.714 12 Si 0.918 3.082 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.263 1.263 16 N -0.536 5.536 17 C 0.115 3.885 18 C -0.132 4.132 19 C -0.120 4.120 20 C -0.184 4.184 21 C -0.095 4.095 22 C -0.005 4.005 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.096 0.904 28 H 0.280 0.720 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -2.971 -1.709 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.229 3.771 3 F -0.167 7.167 4 F -0.180 7.180 5 C -0.031 4.031 6 N -0.237 5.237 7 C 0.189 3.811 8 C -0.467 4.467 9 H 0.104 0.896 10 C -0.151 4.151 11 N -0.336 5.336 12 Si 0.741 3.259 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.187 1.187 16 N -0.259 5.259 17 C -0.012 4.012 18 C -0.153 4.153 19 C -0.140 4.140 20 C -0.205 4.205 21 C -0.116 4.116 22 C -0.111 4.111 23 H 0.109 0.891 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.465 -2.391 -1.403 8.907 hybrid contribution -0.985 0.263 -0.104 1.025 sum -9.450 -2.129 -1.507 9.803 Atomic orbital electron populations 1.22741 0.91889 1.05038 1.05350 1.21729 0.93094 0.77115 0.85188 1.93086 1.90456 1.36394 1.96766 1.93014 1.90645 1.80947 1.53363 1.22267 0.81982 1.01964 0.96905 1.45297 1.03203 1.21789 1.53406 1.20478 0.83116 0.88048 0.89483 1.18438 0.94624 1.01792 1.31890 0.89581 1.25864 0.94394 0.99372 0.95498 1.69966 1.01518 1.32797 1.29274 0.86218 0.79283 0.80437 0.79957 1.18831 1.19952 1.18727 1.71407 1.15569 1.12672 1.26259 1.19550 0.90893 0.93932 0.96865 1.19770 0.96688 0.95440 1.03445 1.20223 0.95867 0.96802 1.01155 1.20282 0.92271 1.00707 1.07233 1.19573 0.97732 0.93520 1.00813 1.18817 0.92440 0.94195 1.05658 0.89140 0.90067 0.89518 0.87205 0.88598 0.90852 0.87364 0.87789 0.87825 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.38 37.16 0.35 -1.79 16 2 C 0.27 4.53 2.25 -26.73 -0.06 4.47 16 3 F -0.19 -3.82 16.56 2.25 0.04 -3.79 16 4 F -0.20 -3.85 16.86 2.25 0.04 -3.81 16 5 C 0.10 1.68 5.42 -4.04 -0.02 1.66 16 6 N -0.54 -12.76 2.71 -113.48 -0.31 -13.07 16 7 C 0.42 11.51 7.27 -155.68 -1.13 10.38 16 8 C -0.43 -11.02 8.71 -38.06 -0.33 -11.35 16 9 H 0.09 1.99 7.10 -52.48 -0.37 1.61 16 10 C 0.08 1.90 5.50 -17.29 -0.10 1.81 16 11 N -0.71 -19.09 11.85 55.57 0.66 -18.43 16 12 Si 0.92 18.04 29.56 -169.99 -5.03 13.01 16 13 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 14 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 N -0.54 -15.64 9.33 -10.31 -0.10 -15.74 16 17 C 0.11 3.07 7.21 -84.89 -0.61 2.46 16 18 C -0.13 -3.10 10.07 -39.39 -0.40 -3.50 16 19 C -0.12 -2.42 9.96 -39.96 -0.40 -2.82 16 20 C -0.18 -3.62 10.04 -39.38 -0.40 -4.02 16 21 C -0.09 -2.00 10.04 -39.50 -0.40 -2.40 16 22 C 0.00 -0.12 6.76 -83.75 -0.57 -0.69 16 23 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.11 1.75 7.32 -51.93 -0.38 1.37 16 27 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 28 H 0.28 6.76 8.29 -40.82 -0.34 6.43 16 29 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 288.29 15.07 4.34 4.34 Total: -1.00 -32.24 288.29 -7.68 -39.92 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.27 Total: 3.34 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -4.06 Total: -5.79 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.25 Total: -47.23 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 0.08 Total: -7.59 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.24 -7.68 -39.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704741780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.916 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds