Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39904 * 109.46640 * 2 1 4 4 F 1.39895 * 109.47517 * 239.99934 * 2 1 3 5 5 C 1.53000 * 109.46886 * 119.99483 * 2 1 3 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 2 1 7 7 C 1.37850 * 126.53633 * 90.02950 * 6 5 2 8 8 C 1.40190 * 125.30647 * 359.95886 * 7 6 5 9 9 H 1.08004 * 119.99770 * 0.02562 * 8 7 6 10 10 C 1.40345 * 120.00423 * 179.97438 * 8 7 6 11 11 N 1.30587 * 119.99815 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00348 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46994 * 60.00204 * 12 10 8 14 14 H 1.48494 * 109.47276 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46851 * 300.00753 * 12 10 8 16 16 N 1.32468 * 109.39444 * 179.97438 * 7 6 5 17 17 C 1.33972 * 109.77694 * 359.97438 * 16 7 6 18 18 C 1.40540 * 133.19506 * 179.97438 * 17 16 7 19 19 C 1.36357 * 119.84760 * 180.02562 * 18 17 16 20 20 C 1.39043 * 120.75990 * 359.97438 * 19 18 17 21 21 C 1.37962 * 120.57274 * 0.02562 * 20 19 18 22 22 C 1.37958 * 126.54257 * 269.71235 * 6 5 2 23 23 H 1.09002 * 109.47508 * 300.00087 * 1 2 3 24 24 H 1.09000 * 109.47437 * 60.00685 * 1 2 3 25 25 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47398 * 300.00496 * 5 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 5 2 1 28 28 H 0.97005 * 119.99754 * 179.97438 * 11 10 8 29 29 H 1.07993 * 120.07700 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.61660 * 180.02562 * 19 18 17 31 31 H 1.08003 * 119.71010 * 180.02562 * 20 19 18 32 32 H 1.08002 * 120.11421 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9962 1.3191 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7211 1.2493 6 7 3.5049 -0.7206 1.2496 7 6 4.3251 0.2386 1.8041 8 6 3.8877 1.3921 2.4700 9 1 2.8306 1.5837 2.5805 10 6 4.8234 2.2973 2.9941 11 7 6.1016 2.0654 2.8610 12 14 4.2405 3.8340 3.8821 13 1 3.4202 3.4454 5.0574 14 1 5.4162 4.6193 4.3362 15 1 3.4216 4.6590 2.9579 16 7 5.5911 -0.0992 1.6095 17 6 5.6533 -1.2583 0.9405 18 6 6.7214 -2.0493 0.4837 19 6 6.4685 -3.2095 -0.1865 20 6 5.1625 -3.6230 -0.4248 21 6 4.0957 -2.8654 0.0127 22 6 4.3268 -1.6829 0.7004 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6765 -0.2073 2.1393 27 1 1.6767 -1.7489 1.2494 28 1 6.7484 2.6913 3.2229 29 1 7.7401 -1.7385 0.6623 30 1 7.2921 -3.8147 -0.5355 31 1 4.9817 -4.5452 -0.9570 32 1 3.0843 -3.1933 -0.1768 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704741780.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = -56.816747 kcal Electronic energy + Delta-G solvation = -20508.325229 eV Core-core repulsion = 17104.122748 eV Total energy + Delta-G solvation = -3404.202481 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 266.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.87994 -47.92382 -42.13330 -37.83824 -35.64873 -34.98045 -32.66837 -30.94710 -30.38589 -27.73389 -27.38676 -23.25863 -23.02136 -22.40325 -21.32200 -18.94909 -18.59476 -18.11163 -17.72210 -17.62568 -16.68403 -16.51691 -15.67770 -15.32849 -14.98221 -14.67827 -14.59337 -14.43753 -14.26481 -13.83449 -13.64707 -13.31944 -13.21644 -13.16393 -12.99456 -12.64358 -12.52518 -12.34077 -12.03730 -12.00299 -11.87294 -11.07156 -10.79703 -9.83459 -9.05181 -8.66712 -8.50661 -6.55006 0.50892 0.97101 1.39852 1.47044 1.54761 2.06991 2.26898 2.32553 2.82550 3.11587 3.32189 3.36401 3.61119 3.68289 3.97485 4.09734 4.29706 4.30573 4.45935 4.60693 4.67625 4.77137 4.89037 4.96487 4.99104 5.15360 5.21165 5.53603 5.65534 5.90821 5.92809 6.13332 6.20952 6.52065 6.76896 7.13949 8.05643 8.41788 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.015792 B = 0.009792 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.656292 B = 2858.790785 C = 4372.653024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.255 3.745 3 F -0.214 7.214 4 F -0.216 7.216 5 C 0.084 3.916 6 N -0.542 5.542 7 C 0.396 3.604 8 C -0.455 4.455 9 H 0.103 0.897 10 C 0.028 3.972 11 N -0.768 5.768 12 Si 0.999 3.001 13 H -0.248 1.248 14 H -0.271 1.271 15 H -0.257 1.257 16 N -0.588 5.588 17 C 0.055 3.945 18 C -0.153 4.153 19 C -0.114 4.114 20 C -0.167 4.167 21 C -0.100 4.100 22 C -0.020 4.020 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.283 0.717 29 H 0.102 0.898 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -4.370 -2.164 12.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.217 3.783 3 F -0.195 7.195 4 F -0.197 7.197 5 C -0.040 4.040 6 N -0.238 5.238 7 C 0.159 3.841 8 C -0.493 4.493 9 H 0.121 0.879 10 C -0.195 4.195 11 N -0.391 5.391 12 Si 0.817 3.183 13 H -0.171 1.171 14 H -0.196 1.196 15 H -0.181 1.181 16 N -0.313 5.313 17 C -0.070 4.070 18 C -0.175 4.175 19 C -0.134 4.134 20 C -0.187 4.187 21 C -0.121 4.121 22 C -0.127 4.127 23 H 0.129 0.871 24 H 0.107 0.893 25 H 0.133 0.867 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.949 -3.840 -1.884 11.755 hybrid contribution -0.179 0.465 -0.094 0.507 sum -11.129 -3.375 -1.978 11.796 Atomic orbital electron populations 1.22745 0.86640 1.07412 1.06771 1.22339 0.96475 0.75455 0.83997 1.93029 1.91208 1.38444 1.96811 1.92970 1.91282 1.81187 1.54294 1.22756 0.78797 1.04345 0.98115 1.45432 1.05270 1.20644 1.52437 1.20808 0.83579 0.89307 0.90454 1.18876 0.95670 1.02101 1.32619 0.87911 1.27014 0.94149 1.02648 0.95683 1.70123 1.03181 1.34554 1.31272 0.85023 0.78838 0.75574 0.78838 1.17134 1.19591 1.18135 1.71254 1.17717 1.14439 1.27915 1.20124 0.93339 0.94606 0.98952 1.20059 0.96036 0.96779 1.04576 1.20674 0.97827 0.95531 0.99330 1.20900 0.91366 1.01402 1.05011 1.20026 0.99932 0.92302 0.99840 1.19225 0.91782 0.95389 1.06253 0.87113 0.89309 0.86654 0.85815 0.85385 0.90643 0.87949 0.83795 0.83180 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 9.38 71.98 0.68 -2.68 16 2 C 0.25 8.28 2.25 30.59 0.07 8.35 16 3 F -0.21 -8.83 16.56 44.97 0.74 -8.08 16 4 F -0.22 -8.11 16.86 44.97 0.76 -7.35 16 5 C 0.08 2.85 5.42 86.38 0.47 3.32 16 6 N -0.54 -25.91 2.71 -512.94 -1.39 -27.30 16 7 C 0.40 22.45 7.27 133.69 0.97 23.42 16 8 C -0.46 -24.11 8.71 23.26 0.20 -23.91 16 9 H 0.10 4.82 7.10 -2.91 -0.02 4.79 16 10 C 0.03 1.42 5.50 85.39 0.47 1.89 16 11 N -0.77 -43.45 11.85 21.89 0.26 -43.19 16 12 Si 1.00 37.62 29.56 68.60 2.03 39.65 16 13 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 14 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 16 N -0.59 -36.42 9.33 -186.52 -1.74 -38.16 16 17 C 0.05 3.06 7.21 40.14 0.29 3.35 16 18 C -0.15 -7.36 10.07 22.39 0.23 -7.13 16 19 C -0.11 -4.34 9.96 22.02 0.22 -4.12 16 20 C -0.17 -5.92 10.04 22.40 0.22 -5.70 16 21 C -0.10 -3.97 10.04 22.32 0.22 -3.75 16 22 C -0.02 -0.97 6.76 39.06 0.26 -0.70 16 23 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.12 3.77 7.32 -2.39 -0.02 3.75 16 27 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 28 H 0.28 14.50 8.29 -92.70 -0.77 13.73 16 29 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -76.40 288.29 6.10 -70.30 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 1.14 Total: 21.81 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.30 Total: -7.66 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -2.87 Total: -108.65 kcal Atomic # 9 Polarization: -16.94 SS G_CDS: 1.50 Total: -15.44 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -76.40 6.10 -70.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704741780.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.482 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds