Wall clock time and date at job start Mon Mar 30 2020 06:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48495 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46840 * 300.00107 * 3 2 1 6 6 H 1.48494 * 109.46945 * 59.99691 * 3 2 1 7 7 C 1.37874 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00545 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47373 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46839 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47273 * 305.00252 * 12 11 10 14 14 C 1.50695 * 109.46984 * 65.00178 * 12 11 10 15 15 O 1.20831 * 119.99764 * 120.00139 * 14 12 11 16 16 O 1.34220 * 120.00273 * 299.99777 * 14 12 11 17 17 C 1.50701 * 109.46977 * 185.00092 * 12 11 10 18 18 C 1.38218 * 120.01214 * 299.98051 * 17 12 11 19 19 C 1.38225 * 120.02313 * 180.02562 * 18 17 12 20 20 C 1.38270 * 120.05340 * 359.97438 * 19 18 17 21 21 C 1.38175 * 120.02272 * 359.97438 * 20 19 18 22 22 C 1.38436 * 120.01380 * 120.00003 * 17 12 11 23 23 F 1.35106 * 120.02572 * 359.95685 * 22 17 12 24 24 H 0.97000 * 119.99890 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47340 * 59.99627 * 9 7 2 26 26 H 1.09006 * 109.46496 * 299.99732 * 9 7 2 27 27 H 1.08999 * 109.47361 * 59.99433 * 10 9 7 28 28 H 1.09004 * 109.46680 * 299.99742 * 10 9 7 29 29 H 1.09001 * 109.46835 * 60.00115 * 11 10 9 30 30 H 1.08994 * 109.47335 * 299.99617 * 11 10 9 31 31 H 0.96701 * 117.00439 * 180.02562 * 16 14 12 32 32 H 1.08000 * 119.98639 * 0.02562 * 18 17 12 33 33 H 1.08003 * 119.97189 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.98207 * 180.27551 * 20 19 18 35 35 H 1.08007 * 120.00907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4744 -6.1501 -0.0024 13 1 3.1585 -6.0429 -0.8441 14 6 3.2570 -6.1421 1.2853 15 8 3.2111 -7.0957 2.0261 16 8 4.0053 -5.0760 1.6094 17 6 1.7249 -7.4516 -0.1268 18 6 0.7950 -7.8082 0.8316 19 6 0.1079 -9.0022 0.7180 20 6 0.3495 -9.8409 -0.3544 21 6 1.2779 -9.4859 -1.3143 22 6 1.9679 -8.2906 -1.2008 23 9 2.8763 -7.9428 -2.1384 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8538 -5.0447 -0.8923 30 1 0.8531 -5.0450 0.8877 31 1 4.4897 -5.1173 2.4453 32 1 0.6053 -7.1538 1.6695 33 1 -0.6188 -9.2799 1.4672 34 1 -0.1913 -10.7714 -0.4444 35 1 1.4667 -10.1413 -2.1517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709499393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:32 Heat of formation + Delta-G solvation = -133.613632 kcal Electronic energy + Delta-G solvation = -19751.901892 eV Core-core repulsion = 16435.536802 eV Total energy + Delta-G solvation = -3316.365090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.97877 -40.55363 -38.87561 -36.00197 -35.52333 -33.21332 -31.38237 -30.61541 -28.72717 -25.83255 -23.23756 -23.17444 -22.46767 -20.46959 -19.93839 -17.98414 -17.64195 -16.98108 -16.33759 -16.01696 -15.72451 -15.61646 -15.28218 -14.45735 -14.27345 -13.83878 -13.65769 -13.28662 -13.06358 -12.68686 -12.33199 -12.09511 -11.83068 -11.62113 -11.40532 -11.21754 -11.09666 -10.81995 -10.47259 -10.45110 -10.26039 -9.57749 -9.34895 -9.09781 -8.93786 -8.71540 -8.31864 -5.97306 -3.98957 1.01833 1.13183 2.31440 3.10712 3.32633 3.40159 3.44566 3.59799 4.15762 4.36487 4.48742 4.63043 4.82095 5.05243 5.17611 5.24554 5.32827 5.36633 5.38846 5.75449 5.84968 5.93813 6.00845 6.05967 6.23676 6.32063 6.37159 6.60694 6.76318 6.77607 6.95385 7.22717 7.72174 7.86172 8.02639 8.05023 8.47067 9.08759 9.65030 11.14208 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.004257 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.552378 B = 6575.182427 C = 6812.609995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.045 4.045 13 H 0.118 0.882 14 C 0.491 3.509 15 O -0.520 6.520 16 O -0.495 6.495 17 C -0.104 4.104 18 C -0.057 4.057 19 C -0.131 4.131 20 C -0.091 4.091 21 C -0.158 4.158 22 C 0.107 3.893 23 F -0.137 7.137 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -18.701 0.400 18.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.158 4.158 11 C -0.143 4.143 12 C -0.064 4.064 13 H 0.136 0.864 14 C 0.334 3.666 15 O -0.409 6.409 16 O -0.306 6.306 17 C -0.105 4.105 18 C -0.075 4.075 19 C -0.149 4.149 20 C -0.110 4.110 21 C -0.177 4.177 22 C 0.088 3.912 23 F -0.116 7.116 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.160 -18.803 0.190 18.928 hybrid contribution 0.890 0.968 0.343 1.359 sum 3.050 -17.836 0.533 18.103 Atomic orbital electron populations 1.69978 1.06054 1.26387 1.51266 1.25028 0.94825 0.99228 0.95470 0.86563 0.80175 0.83912 0.77521 1.19718 1.21077 1.21087 1.21308 0.93131 0.91032 1.49986 0.92562 1.19095 0.93974 0.91466 0.97052 1.21898 0.99182 0.92714 1.01970 1.21749 0.96572 0.92869 1.03062 1.20057 0.97448 0.94431 0.94498 0.86387 1.23204 0.76642 0.79164 0.87612 1.90695 1.62424 1.35774 1.52038 1.84747 1.58312 1.42676 1.44846 1.19436 0.99764 0.95614 0.95656 1.20904 0.93174 0.96337 0.97068 1.21188 1.00535 0.94527 0.98682 1.21002 0.96803 0.99598 0.93548 1.21063 0.98900 0.96092 1.01624 1.17502 0.90916 0.94783 0.88039 1.91490 1.64689 1.92091 1.63321 0.93141 0.96745 0.96771 0.90884 0.93170 0.90499 0.91616 0.73768 0.85084 0.85250 0.85113 0.84750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.12 -2.42 4.79 -26.73 -0.13 -2.54 16 11 C -0.11 -1.73 4.41 -26.73 -0.12 -1.85 16 12 C -0.05 -0.67 2.48 -92.92 -0.23 -0.90 16 13 H 0.12 1.69 7.13 -51.93 -0.37 1.32 16 14 C 0.49 7.32 7.47 36.00 0.27 7.59 16 15 O -0.52 -8.55 15.87 -18.75 -0.30 -8.84 16 16 O -0.49 -6.68 10.57 -39.23 -0.41 -7.09 16 17 C -0.10 -1.44 4.40 -104.56 -0.46 -1.90 16 18 C -0.06 -0.73 7.98 -39.59 -0.32 -1.04 16 19 C -0.13 -1.37 10.04 -39.57 -0.40 -1.77 16 20 C -0.09 -0.87 10.04 -39.59 -0.40 -1.27 16 21 C -0.16 -1.70 10.03 -39.52 -0.40 -2.10 16 22 C 0.11 1.41 7.25 -39.42 -0.29 1.12 16 23 F -0.14 -1.90 16.20 2.25 0.04 -1.86 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 1.45 5.46 -51.93 -0.28 1.17 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.06 7.57 -51.93 -0.39 0.67 16 31 H 0.40 3.58 9.10 45.56 0.41 3.99 16 32 H 0.13 1.66 7.58 -52.49 -0.40 1.26 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -32.98 304.85 -6.91 -39.89 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.53 Total: 0.63 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -3.01 Total: -17.69 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.71 Total: -15.94 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.98 -6.91 -39.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709499393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.728 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds