Wall clock time and date at job start Mon Mar 30 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00157 * 2 1 4 4 H 1.48495 * 109.46899 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46840 * 300.00107 * 3 2 1 6 6 H 1.48494 * 109.46945 * 59.99691 * 3 2 1 7 7 C 1.37874 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00545 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47373 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46839 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.47273 * 305.00252 * 12 11 10 14 14 C 1.50695 * 109.46984 * 65.00178 * 12 11 10 15 15 O 1.20831 * 119.99764 * 120.00139 * 14 12 11 16 16 O 1.34220 * 120.00273 * 299.99777 * 14 12 11 17 17 C 1.50701 * 109.46977 * 185.00092 * 12 11 10 18 18 C 1.38218 * 120.01214 * 299.98051 * 17 12 11 19 19 C 1.38225 * 120.02313 * 180.02562 * 18 17 12 20 20 C 1.38270 * 120.05340 * 359.97438 * 19 18 17 21 21 C 1.38175 * 120.02272 * 359.97438 * 20 19 18 22 22 C 1.38436 * 120.01380 * 120.00003 * 17 12 11 23 23 F 1.35106 * 120.02572 * 359.95685 * 22 17 12 24 24 H 0.97000 * 119.99890 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47340 * 59.99627 * 9 7 2 26 26 H 1.09006 * 109.46496 * 299.99732 * 9 7 2 27 27 H 1.08999 * 109.47361 * 59.99433 * 10 9 7 28 28 H 1.09004 * 109.46680 * 299.99742 * 10 9 7 29 29 H 1.09001 * 109.46835 * 60.00115 * 11 10 9 30 30 H 1.08994 * 109.47335 * 299.99617 * 11 10 9 31 31 H 0.96701 * 117.00439 * 180.02562 * 16 14 12 32 32 H 1.08000 * 119.98639 * 0.02562 * 18 17 12 33 33 H 1.08003 * 119.97189 * 180.02562 * 19 18 17 34 34 H 1.07999 * 119.98207 * 180.27551 * 20 19 18 35 35 H 1.08007 * 120.00907 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4744 -6.1501 -0.0024 13 1 3.1585 -6.0429 -0.8441 14 6 3.2570 -6.1421 1.2853 15 8 3.2111 -7.0957 2.0261 16 8 4.0053 -5.0760 1.6094 17 6 1.7249 -7.4516 -0.1268 18 6 0.7950 -7.8082 0.8316 19 6 0.1079 -9.0022 0.7180 20 6 0.3495 -9.8409 -0.3544 21 6 1.2779 -9.4859 -1.3143 22 6 1.9679 -8.2906 -1.2008 23 9 2.8763 -7.9428 -2.1384 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 0.8538 -5.0447 -0.8923 30 1 0.8531 -5.0450 0.8877 31 1 4.4897 -5.1173 2.4453 32 1 0.6053 -7.1538 1.6695 33 1 -0.6188 -9.2799 1.4672 34 1 -0.1913 -10.7714 -0.4444 35 1 1.4667 -10.1413 -2.1517 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709499393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:31 Heat of formation + Delta-G solvation = -152.863312 kcal Electronic energy + Delta-G solvation = -19752.736621 eV Core-core repulsion = 16435.536802 eV Total energy + Delta-G solvation = -3317.199819 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.96498 -41.69175 -39.80097 -37.18329 -36.93906 -35.07053 -32.97294 -31.48488 -30.12256 -27.50583 -24.80381 -24.20304 -23.55157 -21.98052 -21.24483 -19.15244 -18.58468 -18.41465 -18.07303 -17.08747 -16.75851 -16.68238 -16.51543 -16.31050 -15.38176 -15.16866 -14.68748 -14.53809 -14.32556 -14.09242 -13.67590 -13.59668 -13.10061 -13.09421 -12.69588 -12.64280 -12.50239 -12.38768 -12.10085 -11.99322 -11.52547 -11.33380 -11.21975 -11.05987 -10.51865 -9.91832 -9.65087 -8.17376 -6.27584 0.12638 0.26429 1.13123 1.41312 1.41730 1.55155 2.08317 2.43128 2.70102 3.16072 3.24825 3.32111 3.67318 3.97049 3.98493 4.16341 4.29924 4.32708 4.39111 4.50461 4.61242 4.86496 4.91988 5.06683 5.08129 5.18780 5.22116 5.34532 5.38221 5.46929 5.57469 5.60574 5.81983 5.92986 5.94257 6.30137 6.89918 6.99085 7.41554 8.94743 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.004257 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.552378 B = 6575.182427 C = 6812.609995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.963 3.037 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.108 4.108 11 C -0.093 4.093 12 C -0.039 4.039 13 H 0.119 0.881 14 C 0.495 3.505 15 O -0.536 6.536 16 O -0.500 6.500 17 C -0.124 4.124 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.156 4.156 22 C 0.083 3.917 23 F -0.147 7.147 24 H 0.262 0.738 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.424 0.576 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -19.834 0.433 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.145 4.145 11 C -0.130 4.130 12 C -0.059 4.059 13 H 0.137 0.863 14 C 0.338 3.662 15 O -0.427 6.427 16 O -0.313 6.313 17 C -0.125 4.125 18 C -0.094 4.094 19 C -0.148 4.148 20 C -0.100 4.100 21 C -0.175 4.175 22 C 0.064 3.936 23 F -0.126 7.126 24 H 0.071 0.929 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.285 0.715 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.187 0.813 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.610 -19.940 0.234 20.112 hybrid contribution 0.719 1.269 0.357 1.502 sum 3.330 -18.671 0.592 18.975 Atomic orbital electron populations 1.70106 1.07788 1.27581 1.52101 1.25967 0.95734 1.03288 0.94897 0.85428 0.79172 0.78925 0.77709 1.18537 1.20505 1.20414 1.21748 0.93595 0.92377 1.49905 0.92153 1.19016 0.94429 0.93219 0.94672 1.21689 0.98074 0.92477 1.02232 1.21521 0.96604 0.91892 1.03032 1.19911 0.96980 0.94383 0.94577 0.86280 1.23193 0.76504 0.79077 0.87422 1.90679 1.63068 1.36417 1.52489 1.84676 1.58264 1.42111 1.46299 1.19430 1.00741 0.95559 0.96792 1.21016 0.93896 0.97590 0.96940 1.21557 1.00190 0.93502 0.99507 1.21463 0.95848 1.00475 0.92202 1.21435 0.98249 0.95257 1.02557 1.17796 0.91768 0.95963 0.88033 1.91458 1.65174 1.92327 1.63615 0.92877 0.99185 0.99092 0.90410 0.93074 0.90624 0.91650 0.71457 0.85806 0.82662 0.81325 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.96 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -4.38 4.79 30.59 0.15 -4.23 16 11 C -0.09 -3.12 4.41 30.60 0.13 -2.98 16 12 C -0.04 -1.16 2.48 -12.29 -0.03 -1.19 16 13 H 0.12 3.43 7.13 -2.39 -0.02 3.42 16 14 C 0.49 14.62 7.47 71.23 0.53 15.15 16 15 O -0.54 -17.42 15.87 21.95 0.35 -17.07 16 16 O -0.50 -13.15 10.57 -51.32 -0.54 -13.70 16 17 C -0.12 -3.41 4.40 -19.82 -0.09 -3.50 16 18 C -0.08 -1.90 7.98 22.26 0.18 -1.72 16 19 C -0.13 -2.41 10.04 22.27 0.22 -2.19 16 20 C -0.08 -1.29 10.04 22.26 0.22 -1.07 16 21 C -0.16 -2.99 10.03 22.31 0.22 -2.77 16 22 C 0.08 2.14 7.25 22.37 0.16 2.30 16 23 F -0.15 -4.02 16.20 44.97 0.73 -3.29 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 27 H 0.08 3.09 5.46 -2.39 -0.01 3.08 16 28 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 31 H 0.42 7.07 9.10 -74.06 -0.67 6.39 16 32 H 0.12 3.15 7.58 -2.91 -0.02 3.13 16 33 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -71.27 304.85 5.83 -65.44 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.44 Total: 10.15 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.55 Total: -31.04 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.28 Total: -57.01 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.19 Total: -30.77 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.73 Total: -3.29 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -71.27 5.83 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709499393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.428 kcal (2) G-P(sol) polarization free energy of solvation -71.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds